BAC Information

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BAC

Clone NameB6Ng01-105F02
Chromosome5 (Build37)
Map Location 66,427,197 - 66,610,040
singlet/doubletdoublet
Overlap geneBC013481, LOC626714, LOC666854, LOC100042394
Upstream gene9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik
Downstream geneNsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105F02.bB6Ng01-105F02.g
ACCDH913376DH913377
length1,1971,045
definitionDH913376|Mus musculus domesticus DNA, BAC clone: B6Ng01-105F02, 5' end.DH913377|Mus musculus domesticus DNA, BAC clone: B6Ng01-105F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,427,197 - 66,428,383)(66,608,988 - 66,610,040)
sequence
gaattcacattttagggagagctttgtcacaaaggtggtgaaaacctcat
gggtgatggagatactctgtgtgaagaaagagctcaccacaaatcaggaa
gaaaccaggagagaaagattagcctcggcagagggtttttaacatgtggc
atttagctttttgtccagtaccaagtcaccaccacccactcaaataaaca
tcaggaaggctgctcccactcttggagctctggcaccagggcaggtctgt
cagtccgtccatcccaagactgaaagaataagagggttcccactggaagt
caggctataggaccaggaattcacctaggggccccaaacaataagcaggg
gatgggagctctggctcaccctgcacccctcacccgtctacactaactgc
cttctgtgagtctccttgctgtaagcaaagtcttaaagagacaggagatc
acgaagtcctagcctctacctttagaagcccccgactaaggaacagctcc
ccataggagggccaggttatgttgatgctcttaacacagtctgttgtggc
aaagaacatcactcaatgcatggctctgtttgataaacagaagcaaagcc
aagaggctcttttcccaggcacttctatcaacacagtcctgaaaaggaga
ctttgctgtgggttcccagggacaccagctgtatggctcaggaggggtgg
ctactttccagaaagtgggcaaagcagagggattttctgccccggagttt
gacagtacctaaatatctgctaggaatccattatgttgatccttttataa
gcattacaacacttaacactcattcttaacgagttcactgatgctggagg
aaacaaacgcctaaacaagccactggcatacagtaggagggggtttatcg
tttccctcctttattctggctctgctgggcctgagccattgagagatctg
ggaaggacagaaaagtctgacaggaggcaggcagatgcctgaatagagaa
agaagctgctgcagtctatcagatgctgtagcttgagagatgcgggggtt
tggaagaatttttgtttgttgtttgtttcccgcccctatgaattctcatt
ttccagtccagaactcctgaacttcgccaaggcactccgcaggatacaat
ttatcgcaggaatttgaaacccttcgtcaggttgtcagcatcctggc
gaattccaaggacctttgtgtagacccggcttaatttgcaggcagaattg
catgtgtgccccacctcagacctgaaaaatatgttagctagcttccaaaa
acggcctgaaggggatggaggagaaggctctgcaggtaagaacgaccacg
gagcaaatgcaatcctcagttgccacgtgcaaagaggagcgtgtgcccaa
gtctcagtgctggggtctatggtagagacaaaagggttttcagtttctag
ctggttactttttaaaggaaccagtctctggtacagttagagcctgtctc
agggaatgaaggcagagggtgagagaacaccatgtcctctcctcttctgg
cttctacatatgctcacatggcaagcacacacatgagcacatatatactc
cacacaggtacaaataaatatgtagagatatttttaaaatgtatttatct
atctgcactaaacttttaaaaaaagtaaatgcaaaccccaaatgggacac
atttctaaaatgaaccttttctcctgctgttaaattgacaccccagccca
actccaaccatgggaaaacaagaaggtagttacacccgcttctgagggct
ccttcccctagtggggccttacctaaagataatttgatctaacctctgtt
ccatagagagaggtaggggagcccacagagtttcaagaatgaacaagcgg
gcatttgataataaaagggaggctggagcctccgactccctgggtggagc
ctgctgttttcagcatgaaatctgctcagcacacgggccatctcagactc
accttacctctggagtttttcttttgggccacagtaatttcctgcccctt
gaacttggcatacacagacagtggatcttgcccagcacctgcagaccttg
ggttacacttgagggccgctgtagccaagagggagtgggtactagggata
ctggttatatgactatcacagttcaaacaaacaacaacaacaacaacaaa
caagcctttcatgcatgccctacttccaaaatgacaagctatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66427197_66428383
seq2: B6Ng01-105F02.b_47_1243

seq1  GAATTCACATTTTAGGGAGAGCTTTGTCACAAAGGTGGTGAAAACCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTTAGGGAGAGCTTTGTCACAAAGGTGGTGAAAACCTCAT  50

seq1  GGGTGATGGAGATACTCTGTGTGAAGAAAGAGCTCACCACAAATCAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATGGAGATACTCTGTGTGAAGAAAGAGCTCACCACAAATCAGGAA  100

seq1  GAAACCAGGAGAGAAAGATTAGCCTCGGCAGAGGGTTTTTAACATGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGGAGAGAAAGATTAGCCTCGGCAGAGGGTTTTTAACATGTGGC  150

seq1  ATTTAGCTTTTTGTCCAGTACCAAGTCACCACCACCCACTCAAATAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTTTTTGTCCAGTACCAAGTCACCACCACCCACTCAAATAAACA  200

seq1  TCAGGAAGGCTGCTCCCACTCTTGGAGCTCTGGCACCAGGGCAGGTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGGCTGCTCCCACTCTTGGAGCTCTGGCACCAGGGCAGGTCTGT  250

seq1  CAGTCCGTCCATCCCAAGACTGAAAGAATAAGAGGGTTCCCACTGGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCGTCCATCCCAAGACTGAAAGAATAAGAGGGTTCCCACTGGAAGT  300

seq1  CAGGCTATAGGACCAGGAATTCACCTAGGGGCCCCAAACAATAAGCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTATAGGACCAGGAATTCACCTAGGGGCCCCAAACAATAAGCAGGG  350

seq1  GATGGGAGCTCTGGCTCACCCTGCACCCCTCACCCGTCTACACTAACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGCTCTGGCTCACCCTGCACCCCTCACCCGTCTACACTAACTGC  400

seq1  CTTCTGTGAGTCTCCTTGCTGTAAGCAAAGTCTTAAAGAGACAGGAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGAGTCTCCTTGCTGTAAGCAAAGTCTTAAAGAGACAGGAGATC  450

seq1  ACGAAGTCCTAGCCTCTACCTTTAGAAGCCCCCGACTAAGGAACAGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGTCCTAGCCTCTACCTTTAGAAGCCCCCGACTAAGGAACAGCTCC  500

seq1  CCATAGGAGGGCCAGGTTATGTTGATGCTCTTAACACAGTCTGTTGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGAGGGCCAGGTTATGTTGATGCTCTTAACACAGTCTGTTGTGGC  550

seq1  AAAGAACATCACTCAATGCATGGCTCTGTTTGATAAACAGAAGCAAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATCACTCAATGCATGGCTCTGTTTGATAAACAGAAGCAAAGCC  600

seq1  AAGAGGCTCTTTTCCCAGGCACTTCTATCAACACAGTCCTGAAAAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTCTTTTCCCAGGCACTTCTATCAACACAGTCCTGAAAAGGAGA  650

seq1  CTTTGCTGTGGGTTCCCAGGGACACCAGCTGTATGGCTCAGGAGGGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGTGGGTTCCCAGGGACACCAGCTGTATGGCTCAGGAGGGGTGG  700

seq1  CTACTTTCCAGAAAGTGGGCAAAGCAGAGGGATTTTCTGCCCCGGAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCCAGAAAGTGGGCAAAGCAGAGGGATTTTCTGCCCCGGAGTTT  750

seq1  GACAGTACCTAAATATCTGCTAGGAATCCATTATGTTGATCCTTTTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTACCTAAATATCTGCTAGGAATCCATTATGTTGATCCTTTTATAA  800

seq1  GCATTACAACACTTAACACTCATTCTTAACGAGTTCACTGATGCTGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACAACACTTAACACTCATTCTTAACGAGTTCACTGATGCTGGAGG  850

seq1  AAACAAACGCCTAAACAAGCCACTGGCATACAGTAGGAGGGGGTTTATCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACGCCTAAACAAGCCACTGGCATACAGTAGGAGGGGGTTTATCG  900

seq1  TTTCCCTCC-TTATTCTGGCTCTGCT-GGCCTGAGCCATTGAGAGATCTG  948
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  TTTCCCTCCTTTATTCTGGCTCTGCTGGGCCTGAGCCATTGAGAGATCTG  950

seq1  GGAAGGACAGAAAAGTCTGACAGGAAGGCAGGCAGATGCCTGAATAGAGA  998
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGAAGGACAGAAAAGTCTGACAGG-AGGCAGGCAGATGCCTGAATAGAGA  999

seq1  AAGAAGCTGCTGCAGTCTATCAGATGCTGTAGCTTGAAGAGATGCGGTGG  1048
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  AAGAAGCTGCTGCAGTCTATCAGATGCTGTAGCTTG-AGAGATGCGGGGG  1048

seq1  TTTGGAAG-ATTTTTGTTTGTTTGTTTGTTTCCACGCAC--ATGA--TCT  1093
      |||||||| ||||||||||| |||||||||||| ||| |  ||||  |||
seq2  TTTGGAAGAATTTTTGTTTG-TTGTTTGTTTCC-CGCCCCTATGAATTCT  1096

seq1  CATTTCCCAGTCCCAGACT-CTGAGCTGCGC--AGGCAC-CCG-AGG-TA  1137
      ||||| |||||||   ||| |||| || |||  |||||| ||| ||| ||
seq2  CATTTTCCAGTCCAGAACTCCTGAACTTCGCCAAGGCACTCCGCAGGATA  1146

seq1  CCATTTATCGCAGGATTTTGAA--CCTTCTGTAGGTCTGTCAGCATTCTG  1185
      | ||||||||||||| ||||||  |||||   |||| ||||||||| |||
seq2  CAATTTATCGCAGGAATTTGAAACCCTTCGTCAGGT-TGTCAGCATCCTG  1195

seq1  GC  1187
      ||
seq2  GC  1197

seq1: chr5_66608988_66610040
seq2: B6Ng01-105F02.g_67_1111 (reverse)

seq1  TTCATAGCTTGGTCATTTGGGAAGTAGGGCATGGCATGAAAGGCTTTGTT  50
      |||||||||| ||||||| ||||||||||||| ||||||||||| |||||
seq2  TTCATAGCTT-GTCATTTTGGAAGTAGGGCAT-GCATGAAAGGC-TTGTT  47

seq1  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGAACTGTGGATAGTCATAATA  100
      || |||||   |||||   ||||||||||||||||| ||||||||| |||
seq2  TG-TTGTT--GTTGTT--GTTGTTTGTTTGAACTGT-GATAGTCAT-ATA  90

seq1  ACCAGTATCCCTAGTCCCCACTTCCCTCTTGGCTACAGCCGCCCTCAAGT  150
      ||||||||||||||| ||||| ||||||||||||||||| ||||||||||
seq2  ACCAGTATCCCTAGTACCCAC-TCCCTCTTGGCTACAGCGGCCCTCAAGT  139

seq1  GTAA-CCAAGGTCTGCAGGTGCTGGGC-AGATCCACTTGTCTGTGTATGC  198
      |||| |||||||||||||||||||||| |||||||| |||||||||||||
seq2  GTAACCCAAGGTCTGCAGGTGCTGGGCAAGATCCAC-TGTCTGTGTATGC  188

seq1  CAAGTTCAAGGGGCAGG-AATTACTGTGGCCCAAAAGAAAGACTCCAGAG  247
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  CAAGTTCAAGGGGCAGGAAATTACTGTGGCCCAAAAGAAAAACTCCAGAG  238

seq1  GTAAGGTGAGTCTGAGATGGCCCGTGTGCTGAGCAGATTTCATGCTG-AA  296
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAAGGTGAGTCTGAGATGGCCCGTGTGCTGAGCAGATTTCATGCTGAAA  288

seq1  ACAGCAGGCTCCACCCAGGGAGTCGGAGGCTCCAGCCTCCCTTTTATTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGCTCCACCCAGGGAGTCGGAGGCTCCAGCCTCCCTTTTATTAT  338

seq1  CAAATGCCCGCTTGTTCATTCTTGAAACTCTGTGGGCTCCCCTACCTCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCCGCTTGTTCATTCTTGAAACTCTGTGGGCTCCCCTACCTCTC  388

seq1  TCTATGGAACAGAGGTTAGATCAAATTATCTTTAGGTAAGGCCCCACTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGAACAGAGGTTAGATCAAATTATCTTTAGGTAAGGCCCCACTAG  438

seq1  GGGAAGGAGCCCTCAGAAGCGGGTGTAACTACCTTCTTGTTTTCCCATGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGCCCTCAGAAGCGGGTGTAACTACCTTCTTGTTTTCCCATGG  488

seq1  TTGGAGTTGGGCTGGGGTGTCAATTTAACAGCAGGAGAAAAGGTTCATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTGGGCTGGGGTGTCAATTTAACAGCAGGAGAAAAGGTTCATTT  538

seq1  TAGAAATGTGTCCCATTTGGGGTTTGCATTTACTTTTTTTAAAAGTTTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTGTCCCATTTGGGGTTTGCATTTACTTTTTTTAAAAGTTTAG  588

seq1  TGCAGATAGATAAATACATTTTAAAAATATCTCTACATATTTATTTGTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATAGATAAATACATTTTAAAAATATCTCTACATATTTATTTGTAC  638

seq1  CTGTGTGGAGTATATATGTGCTCATGTGTGTGCTTGCCATGTGAGCATAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGAGTATATATGTGCTCATGTGTGTGCTTGCCATGTGAGCATAT  688

seq1  GTAGAAGCCAGAAGAGGAGAGGACATGGTGTTCTCTCACCCTCTGCCTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGCCAGAAGAGGAGAGGACATGGTGTTCTCTCACCCTCTGCCTTC  738

seq1  ATTCCCTGAGACAGGCTCTAACTGTACCAGAGACTGGTTCCTTTAAAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGAGACAGGCTCTAACTGTACCAGAGACTGGTTCCTTTAAAAAG  788

seq1  TAACCAGCTAGAAACTGAAAACCCTTTTGTCTCTACCATAGACCCCAGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGCTAGAAACTGAAAACCCTTTTGTCTCTACCATAGACCCCAGCA  838

seq1  CTGAGACTTGGGCACACGCTCCTCTTTGCACGTGGCAACTGAGGATTGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTTGGGCACACGCTCCTCTTTGCACGTGGCAACTGAGGATTGCA  888

seq1  TTTGCTCCGTGGTCGTTCTTACCTGCAGAGCCTTCTCCTCCATCCCCTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCGTGGTCGTTCTTACCTGCAGAGCCTTCTCCTCCATCCCCTTC  938

seq1  AGGCCGTTTTTGGAAGCTAGCTAACATATTTTTCAGGTCTGAGGTGGGGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTTTTTGGAAGCTAGCTAACATATTTTTCAGGTCTGAGGTGGGGC  988

seq1  ACACATGCAATTCTGCCTGCAAATTAAGCCGGGTCTACACAAAGGTCCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCAATTCTGCCTGCAAATTAAGCCGGGTCTACACAAAGGTCCTT  1038

seq1  GGAATTC  1053
      |||||||
seq2  GGAATTC  1045