BAC Information

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BAC

Clone NameB6Ng01-105J16
Chromosome5 (Build37)
Map Location 95,719,478 - 95,845,754
singlet/doubletdoublet
Overlap geneLOC100041296, EG666159
Upstream geneLOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041253, LOC100041264, EG624049
Downstream geneLOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105J16.bB6Ng01-105J16.g
ACCDH913579DH913580
length1,0481,106
definitionDH913579|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J16, 5' end.DH913580|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,719,478 - 95,720,513)(95,844,654 - 95,845,754)
sequence
gaattctcacctgagaaataccgaatggcagagaagcaccttaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcaaaccagtcagaatggctgagatcaaaaattcattttccat
tctttacgctgccattttttcctattgatgctgtcttttgccttacagag
gatattcagtttcatgaagcccatttattgttgatcttaatgcataagct
atggttgttctgtgcagtaattagtcaacttttacaataactttgagagc
cctgacaccattaatgatattcttcaaccagtagcatttaggagtggagg
atatcaaactatttacagtactagtgttttgttttcctctaatctaattg
tgactgtgccccttttcttttctcttgaagtaaaaagcatttcatatgca
agagccaccatgagctatagcctaaaaaggaagctcctgttactcgaaac
tagggatcactgagcaagagtgagggagagtgactggcatttctttcttt
tcctttctttccttttctttttttgatattatatttattagatatttttt
atttacatttcaaatgttaccccctttcctagtttctcctccaaaaatcc
cctatctcctacccctccccatggtcaagagcccacccactcccattgct
tgtcctggcaatcccctatattgaggcagagagtcttcccaggaccaagg
gtctctcctcccattgatgactgactaggcaatcctctgctacaaatata
gctagagcctcaagttccaccatgtgtttctttggttggtggtatagctc
caagtagctctaagtgtactggttagttcatattgatgttccttctatga
ggcttcagtccccttcagcttcctggctatttctctggctcattcagtgg
gggacctttgtgctccgtccaatagaaaactatgagcattcacttctgta
tttgccaggcactggcagagcctcgcagagacagcttaatcagattcc
gaattctgtagcaaatatcctctggagagagtcaaaatgaacacatggat
gccagacatcatgattcaaaatcttgggtaggtgaataaacttatcagct
aaggtggtttacatatggatgtctaggttggccggtggtaaaaaaagaag
tcacaaacacaatctccatgtctctcacacttcttttttcttccttcccc
tcaccctatctctctgtctgcccgtcaacttcacaggccttgttgcttgg
aacctgtgaacctgctggaagtttgctcacagaaaattcctttcatgttc
ttcaggaaaacaaacaaatcaacaaacaaaagttcacgagccccaaaagg
caatgagtcatgttttaatagtacatgttgctttagaagagggcagaatt
tgttttcagaactatcatcaggtgcctgcagctgcaactcaggcttcagg
tgttagtcccatttcttcagacatctgtggatcctggcatttatatgcac
aatatgtacaataaatctgcatatacacaaaatttagaatgtcttagaca
aaaatcacaccatttcacaaagatttcagaaaaatgaagtaattgaataa
atggcattggccagtagcagttgcctgaggtttgtgtgcctccaatggta
ttcccctccaccacagtgtgaagagaatgtgtgaagtttcatgtgtaatt
gatcttaattcgggagtagtagcccagttttgttctgggctctggtttga
ggtctgcaccttggatattttgaaagaatactaggacttcatcctagaac
aatatctatcttttctgtctatttgcctgtcagttcttttcaagacagtg
ggatgggatccttagtattgctcaacagttctaaatactggggtttctct
ctaaaagaatctacaatacacatattacatttaaacacacatacacaaca
cacacacacctaaacaaatgaaaacaagaaagttatttaagaatgaaatg
taaaggtaattccaaatatcctctggttgggaaataaactcttgaatgga
tatcaagtactatactatagcaattcctccattcttagtttacccagggg
gaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95719478_95720513
seq2: B6Ng01-105J16.b_44_1079

seq1  GAATTCTCACCTGAGAAATACCGAATGGCAGAGAAGCACCTTAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGAAATACCGAATGGCAGAGAAGCACCTTAAAAAAAT  50

seq1  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA  100

seq1  TTCCACCTCAAACCAGTCAGAATGGCTGAGATCAAAAATTCATTTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCAAACCAGTCAGAATGGCTGAGATCAAAAATTCATTTTCCAT  150

seq1  TCTTTACGCTGCCATTTTTTCCTATTGATGCTGTCTTTTGCCTTACAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACGCTGCCATTTTTTCCTATTGATGCTGTCTTTTGCCTTACAGAG  200

seq1  GATATTCAGTTTCATGAAGCCCATTTATTGTTGATCTTAATGCATAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCAGTTTCATGAAGCCCATTTATTGTTGATCTTAATGCATAAGCT  250

seq1  ATGGTTGTTCTGTGCAGTAATTAGTCAACTTTTACAATAACTTTGAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTTCTGTGCAGTAATTAGTCAACTTTTACAATAACTTTGAGAGC  300

seq1  CCTGACACCATTAATGATATTCTTCAACCAGTAGCATTTAGGAGTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACCATTAATGATATTCTTCAACCAGTAGCATTTAGGAGTGGAGG  350

seq1  ATATCAAACTATTTACAGTACTAGTGTTTTGTTTTCCTCTAATCTAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACTATTTACAGTACTAGTGTTTTGTTTTCCTCTAATCTAATTG  400

seq1  TGACTGTGCCCCTTTTCTTTTCTCTTGAAGTAAAAAGCATTTCATATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGCCCCTTTTCTTTTCTCTTGAAGTAAAAAGCATTTCATATGCA  450

seq1  AGAGCCACCATGAGCTATAGCCTAAAAAGGAAGCTCCTGTTACTCGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCATGAGCTATAGCCTAAAAAGGAAGCTCCTGTTACTCGAAAC  500

seq1  TAGGGATCACTGAGCAAGAGTGAGGGAGAGTGACTGGCATTTCTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATCACTGAGCAAGAGTGAGGGAGAGTGACTGGCATTTCTTTCTTT  550

seq1  TCCTTTCTTTCCTTTTCTTTTTTTGATATTATATTTATTAGATATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTTCCTTTTCTTTTTTTGATATTATATTTATTAGATATTTTTT  600

seq1  ATTTACATTTCAAATGTTACCCCCTTTCCTAGTTTCTCCTCCAAAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTTCAAATGTTACCCCCTTTCCTAGTTTCTCCTCCAAAAATCC  650

seq1  CCTATCTCCTACCCCTCCCCATGGTCAAGAGCCCACCCACTCCCATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCCTACCCCTCCCCATGGTCAAGAGCCCACCCACTCCCATTGCT  700

seq1  TGTCCTGGCAATCCCCTATATTGAGGCAGAGAGTCTTCCCAGGACCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGCAATCCCCTATATTGAGGCAGAGAGTCTTCCCAGGACCAAGG  750

seq1  GTCTCTCCTCCCATTGATGACTGACTAGGCAATCCTCTGCTACAAATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTCCCATTGATGACTGACTAGGCAATCCTCTGCTACAAATATA  800

seq1  GCTAGAGCCTCAAGTTCCACCATGTGTTTTCTTTGGTTGGTGGTATAGCT  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTAGAGCCTCAAGTTCCACCATGTG-TTTCTTTGGTTGGTGGTATAGCT  849

seq1  CCAAGTAGCTCTAAGTGTACTGGTTAGTTCATATTGATGTTCCTTCTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAGCTCTAAGTGTACTGGTTAGTTCATATTGATGTTCCTTCTATG  899

seq1  AGGCTTCAGTCCCCTTCAGCTCCCTGGCTATTTCTCTGGCTCATCCAGT-  949
      ||||||||||||||||||||| |||||||||||||||||||||| |||| 
seq2  AGGCTTCAGTCCCCTTCAGCTTCCTGGCTATTTCTCTGGCTCATTCAGTG  949

seq1  GGGGACC-TTGTGCTCCGTCCAATAGAAAACTATGAGCATTCACTTCTGT  998
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCTTTGTGCTCCGTCCAATAGAAAACTATGAGCATTCACTTCTGT  999

seq1  ATTTGCCAGGCACTGGCAGAGCCTCGCAGGAGACAGCT  1036
      |||||||||||||||||||||||||||| |||||||||
seq2  ATTTGCCAGGCACTGGCAGAGCCTCGCA-GAGACAGCT  1036

seq1: chr5_95844654_95845754
seq2: B6Ng01-105J16.g_70_1175 (reverse)

seq1  TCTTTCCACCCTGGGTAAACTAAGGATGTGAGGAATTGCTATAGGTATAG  50
      ||||||| |||||||||||||||| ||| |||||||||||||| ||||||
seq2  TCTTTCC-CCCTGGGTAAACTAAGAATG-GAGGAATTGCTATA-GTATAG  47

seq1  TACTTGGAATATACAATCAAGAGTTTATTTCACATACAGAGAATATTTGG  100
      ||||||  |||| || ||||||||||||||| ||  ||||| ||||||||
seq2  TACTTG--ATATCCATTCAAGAGTTTATTTCCCAACCAGAGGATATTTGG  95

seq1  AATTACCTTTACATTTTCATTCTCAA--TACTTTCTTGTTTTCATTTGTT  148
      ||||||||||||| ||||||||| ||   |||||||||||||||||||||
seq2  AATTACCTTTACA-TTTCATTCTTAAATAACTTTCTTGTTTTCATTTGTT  144

seq1  T-GGTGTGTGTGTG-TGTGTATGTGTGTTTGAATGT-ATATGTGTATTGT  195
      | |||||||||||| ||||||||||||||| ||||| |||||||||||||
seq2  TAGGTGTGTGTGTGTTGTGTATGTGTGTTTAAATGTAATATGTGTATTGT  194

seq1  AGATTC-TTTAGAGAGAAA-CCCAGTATTTAGAACTGTTGAGCAATACTA  243
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  AGATTCTTTTAGAGAGAAACCCCAGTATTTAGAACTGTTGAGCAATACTA  244

seq1  AGGATCCCAT-CCACTGTCTTGAAAAGAACTGACAGGCAAATAGACAG-A  291
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  AGGATCCCATCCCACTGTCTTGAAAAGAACTGACAGGCAAATAGACAGAA  294

seq1  AAGATAGATATTGTTCTAGGATGAAGTCCTAGTATTCTTTC-AAATATCC  340
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGATAGATATTGTTCTAGGATGAAGTCCTAGTATTCTTTCAAAATATCC  344

seq1  AAGGTGCAGACCTCAAACCAGAGCCCAGAAC-AAACTGGGCTACTACTCC  389
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGGTGCAGACCTCAAACCAGAGCCCAGAACAAAACTGGGCTACTACTCC  394

seq1  CGAATTAAGATCAATTACACATGAAACTTCACACATTCTCTTCACACTGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTAAGATCAATTACACATGAAACTTCACACATTCTCTTCACACTGT  444

seq1  GGTGGAGGGGAATACCATTGGAGGCACACAAACCTCAGGCAACTGCTACT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGGGAATACCATTGGAGGCACACAAACCTCAGGCAACTGCTACT  494

seq1  GGCCAATGCCATTTATTCAATTACTTCATTTTTCTGAAATCTTTGTGAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATGCCATTTATTCAATTACTTCATTTTTCTGAAATCTTTGTGAAA  544

seq1  TGGTGTGATTTTTGTCTAAGACATTCTAAATTTTGTGTATATGCAGATTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGATTTTTGTCTAAGACATTCTAAATTTTGTGTATATGCAGATTT  594

seq1  ATTGTACATATTGTGCATATAAATGCCAGGATCCACAGATGTCTGAAGAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACATATTGTGCATATAAATGCCAGGATCCACAGATGTCTGAAGAA  644

seq1  ATGGGACTAACACCTGAAGCCTGAGTTGCAGCTGCAGGCACCTGATGATA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTAACACCTGAAGCCTGAGTTGCAGCTGCAGGCACCTGATGATA  694

seq1  GTTCTGAAAACAAATTCTGCCCTCTTCTAAAGCAACATGTACTATTAAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAAACAAATTCTGCCCTCTTCTAAAGCAACATGTACTATTAAAA  744

seq1  CATGACTCATTGCCTTTTGGGGCTCGTGAACTTTTGTTTGTTGATTTGTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTCATTGCCTTTTGGGGCTCGTGAACTTTTGTTTGTTGATTTGTT  794

seq1  TGTTTTCCTGAAGAACATGAAAGGAATTTTCTGTGAGCAAACTTCCAGCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTGAAGAACATGAAAGGAATTTTCTGTGAGCAAACTTCCAGCA  844

seq1  GGTTCACAGGTTCCAAGCAACAAGGCCTGTGAAGTTGACGGGCAGACAGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACAGGTTCCAAGCAACAAGGCCTGTGAAGTTGACGGGCAGACAGA  894

seq1  GAGATAGGGTGAGGGGAAGGAAGAAAAAAGAAGTGTGAGAGACATGGAGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGGGTGAGGGGAAGGAAGAAAAAAGAAGTGTGAGAGACATGGAGA  944

seq1  TTGTGTTTGTGACTTCTTTTTTTACCACCGGCCAACCTAGACATCCATAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTGTGACTTCTTTTTTTACCACCGGCCAACCTAGACATCCATAT  994

seq1  GTAAACCACCTTAGCTGATAAGTTTATTCACCTACCCAAGATTTTGAATC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCACCTTAGCTGATAAGTTTATTCACCTACCCAAGATTTTGAATC  1044

seq1  ATGATGTCTGGCATCCATGTGTTCATTTTGACTCTCTCCAGAGGATATTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCTGGCATCCATGTGTTCATTTTGACTCTCTCCAGAGGATATTT  1094

seq1  GCTACAGAATTC  1101
      ||||||||||||
seq2  GCTACAGAATTC  1106