BAC Information

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BAC

Clone NameB6Ng01-106E08
Chromosome5 (Build37)
Map Location 57,852,822 - 57,900,197
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721
Downstream geneEG666465, Pcdh7, LOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106E08.bB6Ng01-106E08.g
ACCDH914056DH914057
length1,152375
definitionDH914056|Mus musculus domesticus DNA, BAC clone: B6Ng01-106E08, 5' end.DH914057|Mus musculus domesticus DNA, BAC clone: B6Ng01-106E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,899,027 - 57,900,197)(57,852,822 - 57,853,202)
sequence
gaattctgtgataaagctcaaattccttatgtatctgagagtctaaggtt
cttcatttacttattcatattacttctatgttattttctgttcacttgat
gaatctacttttgatggatatatatatatatatatatatatatatatata
tatatatatatatatatataccaaacatctactttgataataaacacaag
tttctttctatttttgttaatttttgtttcatacattttgccaatctatt
atcaggttcatattgtttaatgtcattacatttccatgacaaagtgaact
gttgtcataattcctttttgaaatttaaattgcaggctgatagtaatgct
ttttaaaaattttcccctattagtttatttatttattcattttacatctg
gatcactgcttgccttcttggtcccccccccctttacagagaccctcttt
ccatcctcctcccttctcctctgagaggattgccgcccctgcctctcctt
ttccaatatccctcccaccctggtgcatcaagtctcttcagggttaggta
tatccttcctcaatgaggccaaacaaggcagctcaattggggaacagaca
caagcactttagggacagccaccactcctgctaaatggcaagatgccaaa
tggatcccctcaaaaccaggaactcattcattttgcttgtttttgttgtt
gttgtttgtttgtttggtgatttttttcattattatttttgggagcttta
tgacattcattattgttttttatttaaaatacatttatttagtgtggggc
aggagcatgtgtatgtcacaggaagtatgtagaggatacaagacaggcag
gcaggttttccctgtatgtctttctttttatcatgttgatcccaggattg
aactctagtcatcacactaggcagcaaataggcttaccaaccccacaacc
tttaccagcaaggaaatttatcatcatattttgttgttgtgtacattgtc
attgtaggtcacatctagacatagagaggaaaaaaataaagaaaccagaa
gtttaagcctgatttacagccatgggggagaatctatatcaaagcctgtt
atccatgtaatattccaagtaactggctagagtgtaagtaaattagggga
ct
agatttgcctcaatactaagaattatgtttagatatgaaaaaaaaacttg
gatgggactagaatatatcttccttggtgaggtaactcctacccaaaagg
acatgcatgcatggtatgtactcactgataagtgtatattaggcaaaaga
aacaatacctaggatacaacccacatactataaaaagtagaaaagcccaa
gctgcgatgtttcaaatccacttagaacggggaagaaaacaatcatggga
ggcatagagagggagggaactggatggaaggggtgatgggtaggggataa
aggcaataggatcaagtatgaggggttgaacaggtgagaagcccaggggc
ctatgagaatatatggaaataagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57899027_57900197
seq2: B6Ng01-106E08.b_49_1200 (reverse)

seq1  AGTCTCCCTAAATTTACTTATCAACTCTAGCAATTTACTTTGAATATTAC  50
      |||| |||| ||||||||||   |||||||| | |||||| |||||||||
seq2  AGTC-CCCT-AATTTACTTA--CACTCTAGCCAGTTACTTGGAATATTAC  46

seq1  ATTGAATAACAGACTTTGATTATAGATTCTCCCAC-TGGCTGTAAATCAA  99
      | || ||||||| |||||| ||||||||||||| | ||||||||||||| 
seq2  A-TGGATAACAGGCTTTGA-TATAGATTCTCCCCCATGGCTGTAAATCAG  94

seq1  GCTATAAAACCTCTTGGTGTTCTTTATTTTTTTCCTTCTCTTATTGTCTA  149
      ||| ||||  ||  |||| |||||||||||||||| |||||   ||||||
seq2  GCT-TAAA--CTTCTGGT-TTCTTTATTTTTTTCC-TCTCT--ATGTCTA  137

seq1  GATGTGGACCTACAATGACAATGTTACAACAACAACAAAAATATGATGAT  199
      ||||| ||||||||||||||||| ||| |||||||| |||||||||||||
seq2  GATGT-GACCTACAATGACAATG-TAC-ACAACAAC-AAAATATGATGAT  183

seq1  AAATTTTCCTTGCTGGT-AAGGTTGTGGGGTTGGTAAGCCTATTTGCTGC  248
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAA-TTTCCTTGCTGGTAAAGGTTGTGGGGTTGGTAAGCCTATTTGCTGC  232

seq1  CTAGTGTGATGACTAGAGTTCAATCCCTGGGATCAACATGATAAAAAGAA  298
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTAGTGTGATGACTAGAGTTCAAT-CCTGGGATCAACATGATAAAAAGAA  281

seq1  AGACATACAGGGAAAACCTGCCTGCCTGTCTTGTATCCTCTACATACTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACAGGGAAAACCTGCCTGCCTGTCTTGTATCCTCTACATACTTC  331

seq1  CTGTGACATACACATGCTCCTGCCCCACACTAAATAAATGTATTTTAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACATACACATGCTCCTGCCCCACACTAAATAAATGTATTTTAAAT  381

seq1  TAAAAACAATAATGAATGTCATAAAGCTCCCAAAAATAATAATGAAAAAA  448
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAATAATGAATGTCATAAAGCTCCCAAAAATAATAATGAAAAAA  431

seq1  ATCACCAAACAAACAAACAACAACAACAAAAACAAGCAAAATGAATGAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAACAAACAAACAACAACAACAAAAACAAGCAAAATGAATGAGT  481

seq1  TCCTGGTTTTGAGGGGATCCATTTGGCATCTTGCCATTTAGCAGGAGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTTTGAGGGGATCCATTTGGCATCTTGCCATTTAGCAGGAGTGG  531

seq1  TGGCTGTCCCTAAAGTGCTTGTGTCTGTTCCCCAATTGAGCTGCCTTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCCTAAAGTGCTTGTGTCTGTTCCCCAATTGAGCTGCCTTGTT  581

seq1  TGGCCTCATTGAGGAAGGATATACCTAACCCTGAAGAGACTTGATGCACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCATTGAGGAAGGATATACCTAACCCTGAAGAGACTTGATGCACC  631

seq1  AGGGTGGGAGGGATATTGGAAAAGGAGAGGCAGGGGCGGCAATCCTCTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGAGGGATATTGGAAAAGGAGAGGCAGGGGCGGCAATCCTCTCA  681

seq1  GAGGAGAAGGGAGGAGGATGGAAAGAGGGTCTCTGTAAAGGGGGGGGGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAGGGAGGAGGATGGAAAGAGGGTCTCTGTAAAGGGGGGGGGGA  731

seq1  CCAAGAAGGCAAGCAGTGATCCAGATGTAAAATGAATAAATAAATAAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGGCAAGCAGTGATCCAGATGTAAAATGAATAAATAAATAAACT  781

seq1  AATAGGGGAAAATTTTTAAAAAGCATTACTATCAGCCTGCAATTTAAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGGAAAATTTTTAAAAAGCATTACTATCAGCCTGCAATTTAAATT  831

seq1  TCAAAAAGGAATTATGACAACAGTTCACTTTGTCATGGAAATGTAATGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGGAATTATGACAACAGTTCACTTTGTCATGGAAATGTAATGAC  881

seq1  ATTAAACAATATGAACCTGATAATAGATTGGCAAAATGTATGAAACAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAATATGAACCTGATAATAGATTGGCAAAATGTATGAAACAAAA  931

seq1  ATTAACAAAAATAGAAAGAAACTTGTGTTTATTATCAAAGTAGATGTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAAAAATAGAAAGAAACTTGTGTTTATTATCAAAGTAGATGTTTG  981

seq1  GTATATATATATATATATATATATATATATATATATATATATATATATAT  1048
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  G--TATATATATATATATATATATATATATATATATATATATATATATAT  1029

seq1  ATATATCCATCAAAAGTAGATTCATCAAGTGAACAGAAAATAACATAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCATCAAAAGTAGATTCATCAAGTGAACAGAAAATAACATAGAA  1079

seq1  GTAATATGAATAAGTAAATGAAGAACCTTAGACTCTCAGATACATAAGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGAATAAGTAAATGAAGAACCTTAGACTCTCAGATACATAAGGA  1129

seq1  ATTTGAGCTTTATCACAGAATTC  1171
      |||||||||||||||||||||||
seq2  ATTTGAGCTTTATCACAGAATTC  1152

seq1: chr5_57852822_57853202
seq2: B6Ng01-106E08.g_66_446

seq1  GAATTCAGATTTGCCTCAATACTAAGAATTATGTTTAGATATGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTTGCCTCAATACTAAGAATTATGTTTAGATATGAAAAAAA  50

seq1  AACTTGGATGGGACTAGAATATATCTTCCTTGGTGAGGTAACTCCTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGATGGGACTAGAATATATCTTCCTTGGTGAGGTAACTCCTACCC  100

seq1  AAAAGGACATGCATGCATGGTATGTACTCACTGATAAGTGTATATTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACATGCATGCATGGTATGTACTCACTGATAAGTGTATATTAGGC  150

seq1  AAAAGAAACAATACCTAGGATACAACCCACATACTATAAAAAGTAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACAATACCTAGGATACAACCCACATACTATAAAAAGTAGAAAA  200

seq1  GCCCAAGCTGCGATGTTTCAAATCCACTTAGAACGGGGAAGAAAACAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGCTGCGATGTTTCAAATCCACTTAGAACGGGGAAGAAAACAATC  250

seq1  ATGGGAGGCATAGAGAGGGAGGGAACTGGATGGAAGGGGTGATGGGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGGCATAGAGAGGGAGGGAACTGGATGGAAGGGGTGATGGGTAGG  300

seq1  GGATAAAGGCAATAGGATCAAGTATGAGGGGTTGAACAGGTGAGAAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGGCAATAGGATCAAGTATGAGGGGTTGAACAGGTGAGAAGCCC  350

seq1  AGGGGCCTAGGAGAATAAATGGAAATAAGCA  381
      ||||||||| ||||||| |||||||||||||
seq2  AGGGGCCTATGAGAATATATGGAAATAAGCA  381