BAC Information

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BAC

Clone NameB6Ng01-106F09
Chromosome5 (Build37)
Map Location 12,992,904 - 12,993,981
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106F09.bB6Ng01-106F09.g
ACCDH914106DH914107
length1,1741,065
definitionDH914106|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F09, 5' end.DH914107|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccatcctttaatggggttatttgaat
ttctagagttcagcttcttgagctcttttgatatattgaatattattccc
ctatcagatttaggattggtaaaaattatttcccaatctgtagatggcct
ttttgtcttatggacaatatcttttgccttacaaaagctttgcaatttta
tgaggtctcatttgtcaattcttgatcttaaaagcacaagcaattgcttt
tctattcaggaatttttcccctgtgcccatatcttcgaggctttccccca
ctttctcctcaataaaattcggtgtctctggttttatttggaatctttga
tccacttagacttgagctttgtacaaggagataagaatggatcaattctc
attcttctacaggataaccaccagtcatgccagaaccatttgttgaaaat
gctgtcattttttcactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgagtggattcatttctgggtcttcaatcctatttcattaa
tctaactgtatgtagctgtaccagtaccatgcagcatttatcacaattgc
tttgtagtacagctttaggtcaggcatggtgattccaccagaggttcttt
tattgttgagaagagtttttgctatcctaggtctttcgttattccagatg
aatttgcagattgctctttctaattcattgagaattgagttggaattttg
ataggaattgcattgaatctgtagattgctttttggcaagatagccattt
ttactatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttcttttaatttctttcttcagagacttgaagttcttatcat
acagatatttcacttccttagttagagtcaccccaaggtattttatatta
tttgtgagtattgtgaagagtgttgtttccctaatttcttttctcagcca
gtttatcatttgtgtagagaaagtcatggatgcttggagtaatttatatt
atagctactgcactgagctgtatcagtttagggtctctggggacttgggc
actctataccatcaatcatctgcaaaaggtatgtgactctcctttcattt
acccttagtccttcgtgacaaatt
gaattcctctttcccccagtgagttctcttattttatatgtctgaaaggg
gctgcaagaccaagatgtgtgatgaaagcatctaagattctcaggaaaag
aaaatcagtgtataagggaagaaacaatataatattctatataagcccga
atgttttgcaaacaatttaaaccctgtccttcaaatacttgaaattgtaa
gaatatttttctttatattcagaattggatttctcctaaaatataatttt
tgttaaatcaaatagaagctttatgtgtgttgtttatagctacaaaaaac
tctactaatttattatgttaaattaagatgctactatttaaatgtatatt
attttatgaccagaactttcaacattaatatctactatataacttaattt
aaataaaatacttgtaaaactataacgtaaatagttatgacaatggcgtt
ttccaaataaggaaacccacattagtttcctgtgcgtaatattaatgttt
tcctaaaaaaattccacatatcatctatcaaaaacccgattcattacttt
tttaaaactagcactatgagttaagaagactcggtgactgtgtgttttga
gggtaaactagtgatttctatctagaaacttgatgatatcacattttcca
ccatgctctcgcacaaaagcatatttatacatctcaaagttgagcttcga
gttgcattgacaataacacagaaattctcacacagaagaaaaagcagcag
agagttactttaggagagattataaatttctgcattcaacacaagagact
gagtttgtgggaaggtcgagtgatcctggtaaggaactacataagtgatg
ccagtctcacaaaggcaggaaaatgaaccaaatatcctggctaaaactaa
agacgtcaatacctggagtctaactttttcttcggtaccagactggttta
gtccatctctctttttctccattgctttgatcttcacacttgttttcata
cagcaatcttttgtcatcttcaaattttgtatcgtgctcaacaggctgta
ctttagaactttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12992904_12993981
seq2: B6Ng01-106F09.g_67_1131 (reverse)

seq1  TTCAAAGTTTCTTAAAGGTACAGCCTGGTTTTGAAGGCACGATACAAAAT  50
      ||||||| ||||  || ||||||||||   ||||  ||||||||||||||
seq2  TTCAAAG-TTCT--AAAGTACAGCCTG---TTGA--GCACGATACAAAAT  42

seq1  TTGAAGATTGACAAAGATTTGCTGTAATGAAAACAAGTGTTGAAGATCAA  100
      ||||||| |||||||   ||||||| ||||||||||||| ||||||||||
seq2  TTGAAGA-TGACAAAAGATTGCTGT-ATGAAAACAAGTG-TGAAGATCAA  89

seq1  AGCAATGGAAGAAAAAGAGGAGATTGGACTAAACCAGTCTGGTACCGGAG  150
      |||||||| ||||||||| |||| ||||||||||||||||||||||| ||
seq2  AGCAATGG-AGAAAAAGA-GAGA-TGGACTAAACCAGTCTGGTACCGAAG  136

seq1  -AAAAGTTAGACTCCAGGTATTGACGTCTTTAGTTTTAGCCAGGATATTT  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTAGACTCCAGGTATTGACGTCTTTAGTTTTAGCCAGGATATTT  186

seq1  GGTTCATTTTCCTGCCTTTGTGAGACTGGCATCACTTATGTAGTTCCTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTTTCCTGCCTTTGTGAGACTGGCATCACTTATGTAGTTCCTTA  236

seq1  CCAGGATCACTCGACCTTCCCACAAACTCAGTCTCTTGTGTTGAATGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCACTCGACCTTCCCACAAACTCAGTCTCTTGTGTTGAATGCAG  286

seq1  AAATTTATAATCTCTCCTAAAGTAACTCTCTGCTGCTTTTTCTTCTGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATAATCTCTCCTAAAGTAACTCTCTGCTGCTTTTTCTTCTGTGT  336

seq1  GAGAATTTCTGTGTTATTGTCAATGCAACTCGAAGCTCAACTTTGAGATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTCTGTGTTATTGTCAATGCAACTCGAAGCTCAACTTTGAGATG  386

seq1  TATAAATATGCTTTTGTGCGAGAGCATGGTGGAAAATGTGATATCATCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATGCTTTTGTGCGAGAGCATGGTGGAAAATGTGATATCATCAA  436

seq1  GTTTCTAGATAGAAATCACTAGTTTACCCTCAAAACACACAGTCACCGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGATAGAAATCACTAGTTTACCCTCAAAACACACAGTCACCGAG  486

seq1  TCTTCTTAACTCATAGTGCTAGTTTTAAAAAAGTAATGAATCGGGTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTAACTCATAGTGCTAGTTTTAAAAAAGTAATGAATCGGGTTTTT  536

seq1  GATAGATGATATGTGGAATTTTTTTAGGAAAACATTAATATTACGCACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATGATATGTGGAATTTTTTTAGGAAAACATTAATATTACGCACAG  586

seq1  GAAACTAATGTGGGTTTCCTTATTTGGAAAACGCCATTGTCATAACTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAATGTGGGTTTCCTTATTTGGAAAACGCCATTGTCATAACTATT  636

seq1  TACGTTATAGTTTTACAAGTATTTTATTTAAATTAAGTTATATAGTAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTATAGTTTTACAAGTATTTTATTTAAATTAAGTTATATAGTAGAT  686

seq1  ATTAATGTTGAAAGTTCTGGTCATAAAATAATATACATTTAAATAGTAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTGAAAGTTCTGGTCATAAAATAATATACATTTAAATAGTAGC  736

seq1  ATCTTAATTTAACATAATAAATTAGTAGAGTTTTTTGTAGCTATAAACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATTTAACATAATAAATTAGTAGAGTTTTTTGTAGCTATAAACAA  786

seq1  CACACATAAAGCTTCTATTTGATTTAACAAAAATTATATTTTAGGAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAAAGCTTCTATTTGATTTAACAAAAATTATATTTTAGGAGAAA  836

seq1  TCCAATTCTGAATATAAAGAAAAATATTCTTACAATTTCAAGTATTTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCTGAATATAAAGAAAAATATTCTTACAATTTCAAGTATTTGAA  886

seq1  GGACAGGGTTTAAATTGTTTGCAAAACATTCGGGCTTATATAGAATATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGTTTAAATTGTTTGCAAAACATTCGGGCTTATATAGAATATTA  936

seq1  TATTGTTTCTTCCCTTATACACTGATTTTCTTTTCCTGAGAATCTTAGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTCTTCCCTTATACACTGATTTTCTTTTCCTGAGAATCTTAGAT  986

seq1  GCTTTCATCACACATCTTGGTCTTGCAGCCCCTTTCAGACATATAAAATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATCACACATCTTGGTCTTGCAGCCCCTTTCAGACATATAAAATA  1036

seq1  AGAGAACTCACTGGGGGAAAGAGGAATTC  1078
      |||||||||||||||||||||||||||||
seq2  AGAGAACTCACTGGGGGAAAGAGGAATTC  1065