BAC Information

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BAC

Clone NameB6Ng01-106J08
Chromosome5 (Build37)
Map Location 96,296,222 - 96,417,012
singlet/doubletdoublet
Overlap geneCxcl13, EG666231
Upstream geneLOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921
Downstream geneCnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106J08.bB6Ng01-106J08.g
ACCDH914282DH914283
length259889
definitionDH914282|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J08, 5' end.DH914283|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,296,222 - 96,296,480)(96,416,119 - 96,417,012)
sequence
caagtgaatgatttccaactgggggaggaggcaggaaatggaccaactgg
ctcatgtaaacagagataaatgttatgtgagaatatttcccaactcatga
aactgtcagtaagaatcaaaatgtacttggggtgcttgcttcggcagcac
atatgctaaaattggaacgatacagagaagattagcatggctcctgcaca
agaatgacatgcaaattcgtgaagtgtttcatattttttttggtgagcgg
ggggggggg
gaattcagttagatgattttactgcttgtcctaaatcttagagcccatga
tcccagctgttttttttttttaactctttccaatttttttattaggtatt
ttcttcatttacatttcaaatgctattctgaaagtcccctaaaccctccc
cctaccacctatacactccccgcgtcctgctcccctactcacccactccc
acttcttagccctggtattcccctgtactagagcatataaagtttgcaag
accaaggggcctctcttcccaatgatggccaactaggccatcttctgcta
catatgcagttagagacatgagctctgggggtactggttagttcacattg
ttgttcctccaatagggttgcagaccccttcagctcctcgggtactttct
ctagcttttccattgggggccctgtgtttcatccaatagatgactgtgag
catccacttctgtatttgccaggcactggcatagcctcacaacagatagc
tatatcaggattctttcagcaaaatcttgctgccatatgctatagtgtct
gcatttggtggatgattatgggatggatccctggttggggcagtctctgg
gtggtccatcctttcatctcagcaccaaacttttgtctgtaactctgtaa
ctcctaccatgggtattttttatcaggcacttgaagtttttttaatttct
aatgagaagagtggatagagaatgaaatatttcttgggatagggagaacc
taagacccagatcaaagcttgtttgaagtcagcaaagagccttatcttga
atcaacagtattaacagcttgctttctgctgttgaaatataagaatctct
tctgctcattaggggctgtattgctatattcagggatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96296222_96296480
seq2: B6Ng01-106J08.b_51_309

seq1  CAAGTGAATGATTTCCAACTGGGGGAGGAGGCAGGAAATGGACCAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAATGATTTCCAACTGGGGGAGGAGGCAGGAAATGGACCAACTGG  50

seq1  CTCATGTAAACAGAGATAAATGTTATGTGAGAATATTTCCCAACTCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTAAACAGAGATAAATGTTATGTGAGAATATTTCCCAACTCATGA  100

seq1  AACTGTCAGTAAGAATCAAAATGTACTTGGGGTGCTTGCTTCGGCAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCAGTAAGAATCAAAATGTACTTGGGGTGCTTGCTTCGGCAGCAC  150

seq1  ATATGCTAAAATTGGAACGATACAGAGAAGATTAGCATGGCTCCTGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAAAATTGGAACGATACAGAGAAGATTAGCATGGCTCCTGCACA  200

seq1  AGAATGACATGCAAATTCGTGAAGTGTTTCATATTTTTTTTGGTGAGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACATGCAAATTCGTGAAGTGTTTCATATTTTTTTTGGTGAGCGG  250

seq1  GGGGGGGGG  259
      |||||||||
seq2  GGGGGGGGG  259

seq1: chr5_96416119_96417012
seq2: B6Ng01-106J08.g_69_957 (reverse)

seq1  GTATCCCTTGACTATAGCAATACAGCCCCCTAATGAAGCAGAAGAGACTT  50
      ||||||| ||| ||||||||||||| ||||||||| ||||||||||| ||
seq2  GTATCCC-TGAATATAGCAATACAG-CCCCTAATG-AGCAGAAGAGA-TT  46

seq1  CTTTATATTTCAACAGCAGATATGCAAGCTGTTAGTACTGTTGATTCAAG  100
      | |||||||||||||||||| | ||||||||||| |||||||||||||||
seq2  C-TTATATTTCAACAGCAGA-AAGCAAGCTGTTAATACTGTTGATTCAAG  94

seq1  ATAAGGCTCTTTGCTGACTTCAAACAAGCTTTGATCTGGGTCTTAGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTCTTTGCTGACTTCAAACAAGCTTTGATCTGGGTCTTAGGTTC  144

seq1  TCCCTATCCCAAGAAATATTTCATTCTCTATCCACTCTTCTCATTAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATCCCAAGAAATATTTCATTCTCTATCCACTCTTCTCATTAGAAA  194

seq1  TTAAAAAAACTTCAAGTGCCTGATAAAAAATACCCATGGTAGGAGTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAACTTCAAGTGCCTGATAAAAAATACCCATGGTAGGAGTTACA  244

seq1  GAGTTACAGAC-AAAGTTTGGTGCTGAGATGAAAGGATGGACCACCCAGA  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACAGACAAAAGTTTGGTGCTGAGATGAAAGGATGGACCACCCAGA  294

seq1  GACTGCCCCAACCAGGGATCCATCCCATAATCATCCACCAAATGCAGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCCCAACCAGGGATCCATCCCATAATCATCCACCAAATGCAGACA  344

seq1  CTATAGCATATGGCAGCAAGATTTTGCTGAAAGAATCCTGATATAGCTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCATATGGCAGCAAGATTTTGCTGAAAGAATCCTGATATAGCTAT  394

seq1  CTGTTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCAC  444

seq1  AGTCATCTATTGGATGAAACACAGGGCCCCCAATGGAAAAGCTAGAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTATTGGATGAAACACAGGGCCCCCAATGGAAAAGCTAGAGAAA  494

seq1  GTACCCGAGGAGCTGAAGGGGTCTGCAACCCTATTGGAGGAACAACAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCGAGGAGCTGAAGGGGTCTGCAACCCTATTGGAGGAACAACAATG  544

seq1  TGAACTAACCAGTACCCCCAGAGCTCATGTCTCTAACTGCATATGTAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAACCAGTACCCCCAGAGCTCATGTCTCTAACTGCATATGTAGCA  594

seq1  GAAGATGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGC  644

seq1  AAACTTTATATGCTCTAGTACAGGGGAATACCAGGGCTAAGAAGTGGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATATGCTCTAGTACAGGGGAATACCAGGGCTAAGAAGTGGGAG  694

seq1  TGGGTGAGTAGGGGAGCAGGACGCGGGGAGTGTATAGGTGGTAGGGGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAGTAGGGGAGCAGGACGCGGGGAGTGTATAGGTGGTAGGGGGAG  744

seq1  GGTTTAGGGGACTTTCAGAATAGCATTTGAAATGTAAATGAAGAAAATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGGGGACTTTCAGAATAGCATTTGAAATGTAAATGAAGAAAATAC  794

seq1  CTAATAAAAAAATTGGAAAGAGTTAAAAAAAAAAAACAGCTGGGATCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAAAAATTGGAAAGAGTTAAAAAAAAAAAACAGCTGGGATCATG  844

seq1  GGCTCTAAGATTTAGGACAAGCAGTAAAATCATCTAACTGAATTC  894
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTAAGATTTAGGACAAGCAGTAAAATCATCTAACTGAATTC  889