BAC Information

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BAC

Clone NameB6Ng01-106L10
Chromosome5 (Build37)
Map Location 137,435,310 - 137,619,800
singlet/doubletdoublet
Overlap geneFis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3
Upstream geneSrcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021, Rabl5
Downstream geneLOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L10.bB6Ng01-106L10.g
ACCDH914373DH914374
length531742
definitionDH914373|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L10, 5' end.DH914374|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,435,310 - 137,435,845)(137,619,060 - 137,619,800)
sequence
cacagttgagagccgtttatccggaggcttcacttgattaattattgact
ctctccagccctctcccttccctagtgaaggaggggtgggttagacacaa
agttccaagcttttcatctggactggattctcctgtgaccagcctccatc
ctgaaaaccacccagggcccagttagtgagaattaagtcgctcccattcc
tcaggaagatgcaaggcattcagaactacagcgcccctgcgacctccgtc
agggatcctaactgggtgtggtagctcacacctttaattccagcatttgg
aggcagaagcagttgatttgtatgagtttaaagttattctgagccacaga
ggccatttcagccagggctacatagtgaaaaccccgtgttaaaaaaacca
aaaccgggctggtgagatggctcagcgggtaagagcacccaattgctctt
ccgaaggtctggagttcaaatcccagcaaccacatggtggctcacaacca
tctgtaacgagatttgactccctcttctgga
gaattcagtaacttcaataagacattcacaaaacaggtaaccccgagaga
actacccccaagggcccttcagctctccacctcacccccacccccatccc
cagtcccggggaggagtctggacagggtaagatggcagctgggtacctta
gaggcatattgttctcagctcccccaggtcctcagaggtagccagggcag
gtgagggatgggaaacagggtttccgtgggaactgcaagagggtagcagg
acagacctggtctcttgataagagaactttccatttggtctctgtttcac
tggcgggtggggtgaggagcagggagtgcggatatcccacaggaaatccc
caaggtgggacctctgggatgacatatggccttgtcttgcagatggctct
gatttatgctggcataccggagtatgaaggggttatcatcaaaaatctga
ggtgagtacctggttctggaaggaagagggatttctgcaatgggaacaag
ggtcatgatgatagaggccatttggggactgcctgcatcaccccacagtg
ggtgctgtgcagaaacaccagtagctgtggcttgaagaacagtaacattt
tctgagctcacagccctggaagcccatggaagtctgagaccaaatatggt
gcctttttcctgggtccttgtgtgatattttctccctgtgtgcatatgtt
aatttatctctttgtctaaccaaatgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_137435310_137435845
seq2: B6Ng01-106L10.b_48_584

seq1  GAATTCCACAGTTGAGAGCCGTTTAT-GGGAGGCTTCACTTGATTAATTA  49
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  GAATTCCACAGTTGAGAGCCGTTTATCCGGAGGCTTCACTTGATTAATTA  50

seq1  TTGACTCTCTCCAGCCCTCTCCCTTCCCTAGTGAAGGAGGGGTGGGTTAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTCTCCAGCCCTCTCCCTTCCCTAGTGAAGGAGGGGTGGGTTAG  100

seq1  ACACAAAGTTCCAAGCTTTTCATCTGGACTGGATTCTCCTGTGACCAGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGTTCCAAGCTTTTCATCTGGACTGGATTCTCCTGTGACCAGCC  150

seq1  TCCATCCTGAAAACCACCCAGGGCCCAGTTAGTGAGAATTAAGTCGCTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTGAAAACCACCCAGGGCCCAGTTAGTGAGAATTAAGTCGCTCC  200

seq1  CATTCCTCAGGAAGATGCAAGGCATTCAGAACTACAGCGCCCCTGCGACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCAGGAAGATGCAAGGCATTCAGAACTACAGCGCCCCTGCGACC  250

seq1  TCCGTCAGGGATCCTAACTGGGTGTGGTAGCTCACACCTTTAATTCCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCAGGGATCCTAACTGGGTGTGGTAGCTCACACCTTTAATTCCAGC  300

seq1  ATTTGGAGGCAGAAGCAGTTGATTTGTATGAGTTTAAAGTTATTCTGAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGGCAGAAGCAGTTGATTTGTATGAGTTTAAAGTTATTCTGAGC  350

seq1  CACAGAGGCCATTTCAGCCAGGGCTACATAGTGAAAACCCCGTGTTAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGCCATTTCAGCCAGGGCTACATAGTGAAAACCCCGTGTTAAAA  400

seq1  AAACCAAAACCGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAACCGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCAATT  450

seq1  GCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCA  500

seq1  CAACCATCTGTAACGAGATCTGACTCCCTCTTCTGGA  536
      ||||||||||||||||||| |||||||||||||||||
seq2  CAACCATCTGTAACGAGATTTGACTCCCTCTTCTGGA  537

seq1: chr5_137619060_137619800
seq2: B6Ng01-106L10.g_68_809 (reverse)

seq1  CACACACACACACACACATTTGGTTAGACAAAGAGAT-AATTAACATATG  49
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACACACACACACACACATTTGGTTAGACAAAGAGATAAATTAACATATG  50

seq1  CACACAGGGAGAAAATATCACACAAGGACCCAGGAAAAAGGCACCATATT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGGAGAAAATATCACACAAGGACCCAGGAAAAAGGCACCATATT  100

seq1  TGGTCTCAGACTTCCATGGGCTTCCAGGGCTGTGAGCTCAGAAAATGTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCAGACTTCCATGGGCTTCCAGGGCTGTGAGCTCAGAAAATGTTA  150

seq1  CTGTTCTTCAAGCCACAGCTACTGGTGTTTCTGCACAGCACCCACTGTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCAAGCCACAGCTACTGGTGTTTCTGCACAGCACCCACTGTGG  200

seq1  GGTGATGCAGGCAGTCCCCAAATGGCCTCTATCATCATGACCCTTGTTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCAGGCAGTCCCCAAATGGCCTCTATCATCATGACCCTTGTTCC  250

seq1  CATTGCAGAAATCCCTCTTCCTTCCAGAACCAGGTACTCACCTCAGATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGAAATCCCTCTTCCTTCCAGAACCAGGTACTCACCTCAGATTT  300

seq1  TTGATGATAACCCCTTCATACTCCGGTATGCCAGCATAAATCAGAGCCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATAACCCCTTCATACTCCGGTATGCCAGCATAAATCAGAGCCAT  350

seq1  CTGCAAGACAAGGCCATATGTCATCCCAGAGGTCCCACCTTGGGGATTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGACAAGGCCATATGTCATCCCAGAGGTCCCACCTTGGGGATTTC  400

seq1  CTGTGGGATATCCGCACTCCCTGCTCCTCACCCCACCCGCCAGTGAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGATATCCGCACTCCCTGCTCCTCACCCCACCCGCCAGTGAAACA  450

seq1  GAGACCAAATGGAAAGTTCTCTTATCAAGAGACCAGGTCTGTCCTGCTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAAATGGAAAGTTCTCTTATCAAGAGACCAGGTCTGTCCTGCTAC  500

seq1  CCTCTTGCAGTTCCCACGGAAACCCTGTTTCCCATCCCTCACCTGCCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCAGTTCCCACGGAAACCCTGTTTCCCATCCCTCACCTGCCCTG  550

seq1  GCTACCTCTGAGGACCTGGGGGAGCTGAGAACAATATGCCTCTAAGGTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTCTGAGGACCTGGGGGAGCTGAGAACAATATGCCTCTAAGGTAC  600

seq1  CCAGCTGCCATCTTACCCTGTCCAGACTCCTCCCCGGGACTGGGGATGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCCATCTTACCCTGTCCAGACTCCTCCCCGGGACTGGGGATGGG  650

seq1  GGTGGGGGTGAGGTGGAGAGCTGAAGGGCCCTTGGGGGTAGTTCTCTCGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTGAGGTGGAGAGCTGAAGGGCCCTTGGGGGTAGTTCTCTCGG  700

seq1  GGTTACCTGTTTTGTGAATGTCTTATTGAAGTTACTGAATTC  741
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCTGTTTTGTGAATGTCTTATTGAAGTTACTGAATTC  742