BAC Information

Click to search

BAC

Clone NameB6Ng01-106O13
Chromosome5 (Build37)
Map Location 116,445,615 - 116,592,003
singlet/doubletdoublet
Overlap geneCit, Prkab1, LOC545798, Ccdc60
Upstream geneSppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032
Downstream gene4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3, Taok3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106O13.bB6Ng01-106O13.g
ACCDH914519DH914520
length1,172138
definitionDH914519|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O13, 5' end.DH914520|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,445,615 - 116,446,805)(116,591,866 - 116,592,003)
sequence
gaattcacctatcagtgtgtttgtggagaactgtgaacgtcttgtctcca
aagccacagtttatccttggtggaacatacaatctcatgatacaaaggag
aatattcctcgtggatttgaagtcattttcaaggctgtgtagtatcccat
ggcatacttgaacagaaatgagttctgactaggcagaatagtgagctcat
acctgttcattctctaagtgcacacaccatgggaggcatccgagtgctgt
cttgtcagatgttgttctctagttgtatgtcctaaatgcagagtaggtca
aagaagaaacagatgtgcaggcccataagttctgcaggaccaggatgctc
gctctctctctctctctctctctcacacacacacacacacacaaatacag
acagatatacactcacacatgcacacacacatctctgtcagaaacacaca
cacatctctgtctctgtcacacatccacacacatacatccacacacacgc
acacacattcacgcacatgcacggagtaaataaacaaatgtaaaagaaaa
tactttttttgttgttattgctcacctgttgctatgtaatgagcaatcct
ggatcttaggagctttaagcagctgctgttgtccccggctctgggtctgt
taggctgtgtccctcatggtgtcactgggatctagggcaatcagaaggta
caaaacagccttagaaacaaggagaagcaaggtgccttctctgtctctct
cttctgttgttggccacgggggtcacttagctagaggccttggttcctct
ctatctagactcatccaggacatagacagaggcttcatggcctttctctt
tgcaccacattatgctgggttcaggcaggccaacagagctgccatgttca
gagtcatggctttgccacagagcagccgtgacaacagaggagggacaggt
ccggcccgtcttctctggcagtagtgtccctcttagagagatagtgtaag
acatagctgcagtgctcgcacacatgaggttctgggttcatcaccagcct
gggccacatggggagacgtcttccaaattgagcaagttacaataagcctt
gctgtattatcttaatctgatctttaactcgcctggaaggacgggaatcc
tgactgctcttgcgagaccctg
ttggtgtgggtggaaatctaggtgagtgtgtgatcctgggtgagtatgtg
atcctgggtgagtgtgtgatcctgggtgagtgtgtgatcctgggtgagtg
tgtgatcctgggtgagtgtgtgattctgggtgagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116445615_116446805
seq2: B6Ng01-106O13.b_50_1221

seq1  GAATTCACCTATCAGTGTGTTTGTGGAGAACTGTGAACGTCTTGTCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTATCAGTGTGTTTGTGGAGAACTGTGAACGTCTTGTCTCCA  50

seq1  AAGCCACAGTTTATCCTTGGTGGAACATACAATCTCATGATACAAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGTTTATCCTTGGTGGAACATACAATCTCATGATACAAAGGAG  100

seq1  AATATTCCTCGTGGATTTGAAGTCATTTTCAAGGCTGTGTAGTATCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCTCGTGGATTTGAAGTCATTTTCAAGGCTGTGTAGTATCCCAT  150

seq1  GGCATACTTGAACAGAAATGAGTTCTGACTAGGCAGAATAGTGAGCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACTTGAACAGAAATGAGTTCTGACTAGGCAGAATAGTGAGCTCAT  200

seq1  ACCTGTTCATTCTCTAAGTGCACACACCATGGGAGGCATCCGAGTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTCATTCTCTAAGTGCACACACCATGGGAGGCATCCGAGTGCTGT  250

seq1  CTTGTCAGATGTTGTTCTCTAGTTGTATGTCCTAAATGCAGAGTAGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGATGTTGTTCTCTAGTTGTATGTCCTAAATGCAGAGTAGGTCA  300

seq1  AAGAAGAAACAGATGTGCAGGCCCATAAGTTCTGCAGGACCAGGATGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAACAGATGTGCAGGCCCATAAGTTCTGCAGGACCAGGATGCTC  350

seq1  GCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAAATACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAAATACAG  400

seq1  ACAGATATACACTCACACATGCACACACACATCTCTGTCAGAAACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATACACTCACACATGCACACACACATCTCTGTCAGAAACACACA  450

seq1  CACATCTCTGTCTCTGTCACACATCCACACACATACATCCACACACACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCTGTCTCTGTCACACATCCACACACATACATCCACACACACGC  500

seq1  ACACACATTCACGCACATGCACGGAGTAAATAAACAAATGTAAAAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATTCACGCACATGCACGGAGTAAATAAACAAATGTAAAAGAAAA  550

seq1  TACTTTTTTTGTTGTTATTGCTCACCTGTTGCTATGTAATGAGCAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTTGTTGTTATTGCTCACCTGTTGCTATGTAATGAGCAATCCT  600

seq1  GGATCTTAGGAGCTTTAAGCAGCTGCTGTTGTCCCCGGCTCTGGGTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTAGGAGCTTTAAGCAGCTGCTGTTGTCCCCGGCTCTGGGTCTGT  650

seq1  TAGGCTGTGTCCCTCATGGTGTCACTGGGATCTAGGGCAATCAGAAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTGTCCCTCATGGTGTCACTGGGATCTAGGGCAATCAGAAGGTA  700

seq1  CAAAACAGCCTTAGAAACAAGGAGAAGCAAGGTGCCTTCTCTGTCTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGCCTTAGAAACAAGGAGAAGCAAGGTGCCTTCTCTGTCTCTCT  750

seq1  CTTCTGTTGTTGGCCACGGGGGTCACTTAGCTAGAGGCCTTGGTTCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTGTTGGCCACGGGGGTCACTTAGCTAGAGGCCTTGGTTCCTCT  800

seq1  CTATCTAGACTCATCCAGGACATAGACAGAGGCTTCATGGCCTTTCTC-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTATCTAGACTCATCCAGGACATAGACAGAGGCTTCATGGCCTTTCTCTT  850

seq1  TGCACCACATTATGCT-GGTTCAGGCAGGCCAACAGAGCTGCCATGTTCA  898
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCACCACATTATGCTGGGTTCAGGCAGGCCAACAGAGCTGCCATGTTCA  900

seq1  GAGTCATGGC-TTGCCACAGGAGCAGCCGTGACAACAGAGGAGGGAACAG  947
      |||||||||| |||||||| ||||||||||||||||||||||||| ||| 
seq2  GAGTCATGGCTTTGCCACA-GAGCAGCCGTGACAACAGAGGAGGG-ACA-  947

seq1  GGCCCGGCCCGTCTTCTCTGGCAGTAGTGTCCCCTCTTAGAGAGATAAGT  997
      || ||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GGTCCGGCCCGTCTTCTCTGGCAGTAGTGT-CCCTCTTAGAGAGAT-AGT  995

seq1  GTTAAGACATAGCTGCAGTGCTCGCACACAGGAGGTTCTGGGGTTCATCA  1047
      | |||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  G-TAAGACATAGCTGCAGTGCTCGCACACATGAGGTTCT-GGGTTCATCA  1043

seq1  CCAGCCTGGGCAACATGGGGAGACCGTC-TCCAAATTGAAGCAAAGTAAC  1096
      ||||||||||| ||||||||||| |||| ||||||||| ||| |||| ||
seq2  CCAGCCTGGGCCACATGGGGAGA-CGTCTTCCAAATTG-AGC-AAGTTAC  1090

seq1  AATAAAGCCCTGCTGTAATATCTAAATCCTGATCTTTTAAAAACTCGGCT  1146
      ||| ||||| ||||||| ||||| ||| |||||||||    ||||| || 
seq2  AAT-AAGCCTTGCTGTATTATCTTAAT-CTGATCTTT----AACTC-GCC  1133

seq1  TGGAGAGGACGGGGAGAGCACTGACTGCTCTTGCAGAGGACCCTG  1191
      |||| |||||||   ||   |||||||||||||| || |||||||
seq2  TGGA-AGGACGG---GAATCCTGACTGCTCTTGC-GA-GACCCTG  1172

seq1: chr5_116591866_116592003
seq2: B6Ng01-106O13.g_76_213 (reverse)

seq1  CACACTCACCCAGAATCACACACTCACCCAGGATCACACACTCACCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACCCAGAATCACACACTCACCCAGGATCACACACTCACCCAGG  50

seq1  ATCACACACTCACCCAGGATCACACACTCACCCAGGATCACATACTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACACTCACCCAGGATCACACACTCACCCAGGATCACATACTCACC  100

seq1  CAGGATCACACACTCACCTAGATTTCCACCCACACCAA  138
      ||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCACACACTCACCTAGATTTCCACCCACACCAA  138