BAC Information

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BAC

Clone NameB6Ng01-107C21
Chromosome5 (Build37)
Map Location 19,916,113 - 19,917,200
singlet/doubletsinglet
Overlap geneMagi2
Upstream genenone
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107C21.bB6Ng01-107C21.g
ACCDH914716DH914717
length1,0521,082
definitionDH914716|Mus musculus domesticus DNA, BAC clone: B6Ng01-107C21, 5' end.DH914717|Mus musculus domesticus DNA, BAC clone: B6Ng01-107C21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagctctgttccccattttttgacagggctatttggtt
ctctggagtatccagtctattattctatgtctttttattggggaattgag
tccattgatattaatagatattaaggaatagtgattattacttcctgata
tttttgttattatagggtgaagtatgtttgtgtggctatcttctttaggg
tttgttgaaagattattttcttgcattttctagggtgtagtttccctcca
tgtgctagagttttccatctattatcttttatagggctggatttatggag
agatattgtgtaaatttagttttgtcatggaatatcttggcttctccatc
tatggcaattgaaagttttactgggtatatagtagcctgggctggcattt
gtgagatttgcccaggatcttctagctttctagtgagcatctggtgagaa
gtctggtgtgattctgatagatctgtctttatatgttacttgaccttttt
cccttacagcttttaatattctttctttgttttgggcatttggtgttttg
actattatatgatgggaggaatttcttttctgatccaatctatttggagt
tctgtaggccttttttatatttaagggcatctcttcttaaggttagagaa
gttttgttctataattttgtcgaagatatttactggccctttaagttggg
actcttcactctcttctatacctattatctttaggtatggtcttctcatt
gtgtccttgatttcctggatcttttgggttaggaactttttgcattttgc
attttctttgaccgttctgtcaatgttttctatggtatcttctgtacctg
acattctctcttctatctcttttattctttctgttggtgatgcttgcatc
tatgactcctgatctcttccttagattttctatctcagggttgtctcctt
ttgtgatttctttattgtttttaatttccagttattagatactgggatgg
gttgttcattcctcacctggtagggttgaaatccggaatcttaaggagat
ct
gaattcatgtcctctgcaaaagtgacaagtgctcttagccactgagctat
ctccagacatttctaaaggaattttgaatggtgttaattttttcaaaaga
gacactacttagctggctataaaaagaaccttgtaagcatttatttatgt
gttgtaaataggatgactaaaagaatctcctgcttttaatcattaaaggg
actcttatagaacccacctaatattctcacttaaaataaagaaaactcca
ggaaaaactaaaaccaagttgctagaaaaccagaattcagtgaagatgaa
gaaaatctgacaccattctattgataatgtgcgcagaatttacattgtga
gtccagataatgcagctgctgctaataactccctgtgattttacaaaaga
tgtaggacaacaggtgagcaagcgtggagtttgggccctgaatggaccag
ccttgaatcctggagctctgcccattccttttgtttgttgttgtttgttc
tttgtttcttatggactaccctcgttctacagcccaggctggtatagact
tttctacattgccaggctggccaagtactcaaggcctttggtctagcctt
caaagtgttaggattccagacacaagtcaccacatttggctccacgtgtt
cttttctttggttgttagctgtctggctagtatgtttcccactcttgctt
ctccatgcttttccaaggagcactgatttaactttctttaaatagattca
agatacttgtcaaagttccacatatgaattacttgttttatttatttatt
tttcaagtagcgtaatgattcttattttttcttaaaaactgtcagccctt
ttggggttgaacgatgttgggaaaaactattacatactgatccccccccc
ccccccgcttacatgcacttaagctaagtttctattctatgggttagagg
ttaactattatcaattattgaatgaaagtcatttgcttccctttacattt
ttcttcagtgtctgaagaaaaatttcaccctggtggctctatggagaatc
tgcataacaaatattcagcatgtgctgtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19916113_19917200
seq2: B6Ng01-107C21.g_65_1146 (reverse)

seq1  CAGCAACAGCACACTGCTGATATTTTGTTATGCAGATTCTCCCATAGAGG  50
      |||| |||||||| ||||||   ||||||||||||||||| |||||||| 
seq2  CAGC-ACAGCACA-TGCTGAATATTTGTTATGCAGATTCT-CCATAGAG-  46

seq1  CTCACCAGGGTGAAAATTTTTCTTCAGACACTG-AGAAAAATGTAAAGGG  99
        |||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  -CCACCAGGGTG-AAATTTTTCTTCAGACACTGAAGAAAAATGTAAAGGG  94

seq1  -AGCAAATGACTTTCATTCAATAATTGATAATAGTTAACCCTCTAACCCA  148
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGCAAATGACTTTCATTCAATAATTGATAATAGTTAA-CCTCTAACCCA  143

seq1  TAGAATAGAAACTTAGCTTAAGTGCATGTAAGCGGGGGGGGGGGGGGGGA  198
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGAATAGAAACTTAGCTTAAGTGCATGTAAGC-GGGGGGGGGGGGGGGA  192

seq1  TCAGTATGTAATAGTTTTTCCCAACATCGTTCAACCCCAAAAGGGCTGAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGTAATAGTTTTTCCCAACATCGTTCAACCCCAAAAGGGCTGAC  242

seq1  AGTTTTTAAGAAAAAATAAGAATCATTACGCTACTTGAAAAATAAATAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAAGAAAAAATAAGAATCATTACGCTACTTGAAAAATAAATAAA  292

seq1  TAAAACAAGTAATTCATATGTGGAACTTTGACAAGTATCTTGAATCTATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAGTAATTCATATGTGGAACTTTGACAAGTATCTTGAATCTATT  342

seq1  TAAAGAAAGTTAAATCAGTGCTCCTTGGAAAAGCATGGAGAAGCAAGAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGTTAAATCAGTGCTCCTTGGAAAAGCATGGAGAAGCAAGAGT  392

seq1  GGGAAACATACTAGCCAGACAGCTAACAACCAAAGAAAAGAACACGTGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACATACTAGCCAGACAGCTAACAACCAAAGAAAAGAACACGTGGA  442

seq1  GCCAAATGTGGTGACTTGTGTCTGGAATCCTAACACTTTGAAGGCTAGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGTGGTGACTTGTGTCTGGAATCCTAACACTTTGAAGGCTAGAC  492

seq1  CAAAGGCCTTGAGTACTTGGCCAGCCTGGCAATGTAGAAAAGTCTATACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCCTTGAGTACTTGGCCAGCCTGGCAATGTAGAAAAGTCTATACC  542

seq1  AGCCTGGGCTGTAGAACGAGGGTAGTCCATAAGAAACAAAGAACAAACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGCTGTAGAACGAGGGTAGTCCATAAGAAACAAAGAACAAACAA  592

seq1  CAACAAACAAAAGGAATGGGCAGAGCTCCAGGATTCAAGGCTGGTCCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAAAAGGAATGGGCAGAGCTCCAGGATTCAAGGCTGGTCCATT  642

seq1  CAGGGCCCAAACTCCACGCTTGCTCACCTGTTGTCCTACATCTTTTGTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCAAACTCCACGCTTGCTCACCTGTTGTCCTACATCTTTTGTAA  692

seq1  AATCACAGGGAGTTATTAGCAGCAGCTGCATTATCTGGACTCACAATGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGGGAGTTATTAGCAGCAGCTGCATTATCTGGACTCACAATGTA  742

seq1  AATTCTGCGCACATTATCAATAGAATGGTGTCAGATTTTCTTCATCTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGCGCACATTATCAATAGAATGGTGTCAGATTTTCTTCATCTTCA  792

seq1  CTGAATTCTGGTTTTCTAGCAACTTGGTTTTAGTTTTTCCTGGAGTTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCTGGTTTTCTAGCAACTTGGTTTTAGTTTTTCCTGGAGTTTTC  842

seq1  TTTATTTTAAGTGAGAATATTAGGTGGGTTCTATAAGAGTCCCTTTAATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAGTGAGAATATTAGGTGGGTTCTATAAGAGTCCCTTTAATG  892

seq1  ATTAAAAGCAGGAGATTCTTTTAGTCATCCTATTTACAACACATAAATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGCAGGAGATTCTTTTAGTCATCCTATTTACAACACATAAATAA  942

seq1  ATGCTTACAAGGTTCTTTTTATAGCCAGCTAAGTAGTGTCTCTTTTGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACAAGGTTCTTTTTATAGCCAGCTAAGTAGTGTCTCTTTTGAAA  992

seq1  AAATTAACACCATTCAAAATTCCTTTAGAAATGTCTGGAGATAGCTCAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACACCATTCAAAATTCCTTTAGAAATGTCTGGAGATAGCTCAGT  1042

seq1  GGCTAAGAGCACTTGTCACTTTTGCAGAGGACATGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGAGCACTTGTCACTTTTGCAGAGGACATGAATTC  1082