BAC Information

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BAC

Clone NameB6Ng01-107J20
Chromosome5 (Build37)
Map Location 31,827,506 - 31,976,002
singlet/doubletdoublet
Overlap geneSupt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Upstream gene1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1
Downstream geneBre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107J20.bB6Ng01-107J20.g
ACCDH915030DH915031
length1,0741,079
definitionDH915030|Mus musculus domesticus DNA, BAC clone: B6Ng01-107J20, 5' end.DH915031|Mus musculus domesticus DNA, BAC clone: B6Ng01-107J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,974,922 - 31,976,002)(31,827,506 - 31,828,595)
sequence
gaattctctggaggagatgtgctgtgttataatgaaaactgaaaggaaag
actgtcttcctggcagctcacagcttgcttaagagtaatcagagctctaa
taataacctttcctggtctctcaagaatgtacactgattgcaattaccaa
cgtgctttgttttcttctccttaaattataatagtcttacttctcgcttg
ccaaaaactggagaaaccatccatggacatgagttttttattggctttgg
aggaaaaggtgccaaccagtgtgtccaagctgcgcgactgggagcaaagg
cggccatagtctgcaaggtaagccatatagcattgggaaggggcccaggg
caaaggctggttcaagctcattgtttctgttttccttcacaattatataa
tgaacactttactggtgatagtggtgggtacctatggtaccagctgctca
tgatgctgaagggtcaggttcaaggccagcctcagctacatagtgagtcc
ctgtctaaagaaatattacattttagtaacacttagtgatctgtgatgat
ttgcatctactgttttcagcccgttacagaacaccatcactccaaaggaa
aacctcttgtccatttaagcaatttcttcccaattcctggggtcaccaat
ctacattctgcctctatgaacctatccccgatagttcatataaattggct
gtgtaatatatgacttttgcttttggcttctttcactgtttttgaggctc
ctccatccataacatgtatcaacattacatcttttttaatggctaaatac
tatacctttatgtggatagctatccatcagtgagtgtgttgctggactcc
tggactgtgcccacctttctgattgtttctcagtagcctgtgactatgca
tccacatgcacctctctgagtacctgttttaattcttttgaaggtttgtt
tgtaaaaaaatctaataagagtgataggctttcttatgctttgtgtgagt
ttctccgtcagtgaatcctcttgggagcagcagtcctcaatcactgatgc
tgattcctctgatcaatgaattta
gaattctgtggcttagcattcaataaaagcttactaagcgtctttaattc
acgtctccaggtttactgcctatatgtctcctcaggtccaacaaacatca
aatgaatacattgtgtgacggtgtaagatctttgtcctgagggaataaca
gaagcaaaatactgcagtatagcagcagctggcactgctactttaaaggc
gtgagttcagtgtcctgcaggcaagtgaggggcttcctggacaaaatgaa
tgccctcagctctaacaatatactactcagttcctttctttctctttctt
tcttttcttttttttttttttttacatttacttattttgggtatgtgtgc
atgaaaaaatcacaagacaacttgtgagaggcagttctctcctttcacca
tgtgggttccatggattgaactcgggcattcggacttggcagcaagtgcc
ttttacctactaagccatctaactggcccctcagcttatttcctttgcta
agattgtatttttaaattattaatttcgagacagggtttccctttgaggc
cttggctatcctggaacttgctctgtagaccaggcaggctatgcattcac
agacattcgtttttgttgtctgttgggggttgagtatatgcttgtgtgtt
ccatgtgtatgcaggtgccaaggatatctgaagagggcatcagatccttc
tggagctcaaattagaggtggttgtgaactcccctgatgtgggtactgga
aatggagctcagatccaccgaagagcagcacacagaaccatctctccagc
tccaccactcagcttctcaagaacatgagatatttttataattgaccctt
tgagttgtgacctctgccaggaaccctctacatcttttatcagacttgaa
tttgttctttaggatccctgaaatcaccattcccccacagatcttccttt
ctttgtatatttacatgaatttgcttttatccctgaacctaactttagtg
actatcatctgtattctccccacttgtttaggctgcccatctgaagtttc
agcctctgtcaagagttataaatactatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31974922_31976002
seq2: B6Ng01-107J20.b_45_1118 (reverse)

seq1  TAAATTCATTGGATTCAGAGAATACAGCATCAAGTGATTTGAGGACTGCT  50
      |||||||||||   |||||| |  ||||||| ||||| ||||||||||||
seq2  TAAATTCATTG--ATCAGAGGAATCAGCATC-AGTGA-TTGAGGACTGCT  46

seq1  GCTTCCCAGAGGATTCACTGACGGAGAAACTCACACAAAGCATAAGAAAG  100
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAAGAGGATTCACTGACGGAGAAACTCACACAAAGCATAAGAAAG  96

seq1  CCTAATCACTCTTATTTAGATTTTTTTACAAACAAACCTTCAAAAGAATT  150
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCT-ATCACTCTTA-TTAGATTTTTTTACAAACAAACCTTCAAAAGAATT  144

seq1  AAAAACAGGTACTCAGAGAGGTGCATGTGGATGCATAGTCACAGGCTACT  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAACAGGTACTCAGAGAGGTGCATGTGGATGCATAGTCACAGGCTACT  193

seq1  GAGAAACAATCAGAAAGGTGGGCACAGTCCAGGAGTCCAGCAACACACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAATCAGAAAGGTGGGCACAGTCCAGGAGTCCAGCAACACACTC  243

seq1  ACTGATGGATAGCTATCCACATAAAGGTATAGTATTTAGCCATTAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGATAGCTATCCACATAAAGGTATAGTATTTAGCCATTAAAAAA  293

seq1  GATGTAATGTTGATACATGTTATGGATGGAGGAGCCTCAAAAACAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATGTTGATACATGTTATGGATGGAGGAGCCTCAAAAACAGTGAA  343

seq1  AGAAGCCAAAAGCAAAAGTCATATATTACACAGCCAATTTATATGAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCAAAAGCAAAAGTCATATATTACACAGCCAATTTATATGAACTA  393

seq1  TCGGGGATAGGTTCATAGAGGCAGAATGTAGATTGGTGACCCCAGGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGATAGGTTCATAGAGGCAGAATGTAGATTGGTGACCCCAGGAATT  443

seq1  GGGAAGAAATTGCTTAAATGGACAAGAGGTTTTCCTTTGGAGTGATGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAATTGCTTAAATGGACAAGAGGTTTTCCTTTGGAGTGATGGTG  493

seq1  TTCTGTAACGGGCTGAAAACAGTAGATGCAAATCATCACAGATCACTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAACGGGCTGAAAACAGTAGATGCAAATCATCACAGATCACTAAG  543

seq1  TGTTACTAAAATGTAATATTTCTTTAGACAGGGACTCACTATGTAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTAAAATGTAATATTTCTTTAGACAGGGACTCACTATGTAGCTGA  593

seq1  GGCTGGCCTTGAACCTGACCCTTCAGCATCATGAGCAGCTGGTACCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTTGAACCTGACCCTTCAGCATCATGAGCAGCTGGTACCATAG  643

seq1  GTACCCACCACTATCACCAGTAAAGTGTTCATTATATAATTGTGAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCACCACTATCACCAGTAAAGTGTTCATTATATAATTGTGAAGGAA  693

seq1  AACAGAAACAATGAGCTTGAACCAGCCTTTGCCCTGGGCCCCTTCCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAACAATGAGCTTGAACCAGCCTTTGCCCTGGGCCCCTTCCCAAT  743

seq1  GCTATATGGCTTACCTTGCAGACTATGGCCGCCTTTGCTCCCAGTCGCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATGGCTTACCTTGCAGACTATGGCCGCCTTTGCTCCCAGTCGCGC  793

seq1  AGCTTGGACACACTGGTTGGCACCTTTTCCTCCAAAGCCAATAAAAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGACACACTGGTTGGCACCTTTTCCTCCAAAGCCAATAAAAAACT  843

seq1  CATGTCCATGGATGGTTTCTCCAGTTTTTGGCAAGCGAGAAGTAAGACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCATGGATGGTTTCTCCAGTTTTTGGCAAGCGAGAAGTAAGACTA  893

seq1  TTATAATTTAAGGAGAAGAAAACAAAGCACGTTGGTAATTGCAATCAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTAAGGAGAAGAAAACAAAGCACGTTGGTAATTGCAATCAGTG  943

seq1  TACATTCTTGAGAGACCAGGAAAGGTTATTATTAGAGCTCTGATTACTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTTGAGAGACCAGGAAAGGTTATTATTAGAGCTCTGATTACTCT  993

seq1  TAAGCAAGCTGTGAGCTGCCAGGAAGACAGTCTTTCCTTTCAGTTTTCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGCTGTGAGCTGCCAGGAAGACAGTCTTTCCTTTCAGTTTTCAT  1043

seq1  TATAACACAGCACATCTCCTCCAGAGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  TATAACACAGCACATCTCCTCCAGAGAATTC  1074

seq1: chr5_31827506_31828595
seq2: B6Ng01-107J20.g_65_1143

seq1  GAATTCTGTGGCTTAGCATTCAATAAAAGCTTACTAAGCGTCTTTAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCTTAGCATTCAATAAAAGCTTACTAAGCGTCTTTAATTC  50

seq1  ACGTCTCCAGGTTTACTGCCTATATGTCTCCTCAGGTCCAACAAACATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCCAGGTTTACTGCCTATATGTCTCCTCAGGTCCAACAAACATCA  100

seq1  AATGAATACATTGTGTGACGGTGTAAGATCTTTGTCCTGAGGGAATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATACATTGTGTGACGGTGTAAGATCTTTGTCCTGAGGGAATAACA  150

seq1  GAAGCAAAATACTGCAGTATAGCAGCAGCTGGCACTGCTACTTTAAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAATACTGCAGTATAGCAGCAGCTGGCACTGCTACTTTAAAGGC  200

seq1  GTGAGTTCAGTGTCCTGCAGGCAAGTGAGGGGCTTCCTGGACAAAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCAGTGTCCTGCAGGCAAGTGAGGGGCTTCCTGGACAAAATGAA  250

seq1  TGCCCTCAGCTCTAACAATATACTACTCAGTTCCTTTCTTTCTCTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAGCTCTAACAATATACTACTCAGTTCCTTTCTTTCTCTTTCTT  300

seq1  TCTTTTCTTTTTTTTTTTTTTTTACATTTACTTATTTTGGGTATGTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTTTTTTTTTTTTTACATTTACTTATTTTGGGTATGTGTGC  350

seq1  ATGAAAAAATCACAAGACAACTTGTGAGAGGCAGTTCTCTCCTTTCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAATCACAAGACAACTTGTGAGAGGCAGTTCTCTCCTTTCACCA  400

seq1  TGTGGGTTCCATGGATTGAACTCGGGCATTCGGACTTGGCAGCAAGTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTCCATGGATTGAACTCGGGCATTCGGACTTGGCAGCAAGTGCC  450

seq1  TTTTACCTACTAAGCCATCTAACTGGCCCCTCAGCTTATTTCCTTTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTACTAAGCCATCTAACTGGCCCCTCAGCTTATTTCCTTTGCTA  500

seq1  AGATTGTATTTTTAAATTATTAATTTCGAGACAGGGTTTCCCTTTGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTATTTTTAAATTATTAATTTCGAGACAGGGTTTCCCTTTGAGGC  550

seq1  CTTGGCTATCCTGGAACTTGCTCTGTAGACCAGGCAGGCTATGCATTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTATCCTGGAACTTGCTCTGTAGACCAGGCAGGCTATGCATTCAC  600

seq1  AGACATTCGTTTTTGTTGTCTGTTGGGGGTTGAGTATATGCTTGTGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCGTTTTTGTTGTCTGTTGGGGGTTGAGTATATGCTTGTGTGTT  650

seq1  CCATGTGTATGCAGGTGCCAAGGATATCTGAAGAGGGCATCAGATCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTATGCAGGTGCCAAGGATATCTGAAGAGGGCATCAGATCCTTC  700

seq1  TGGAGCTCAAATTAGAGGTGGTTGTGAACTCCCCTGATGTGGGTACTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCAAATTAGAGGTGGTTGTGAACTCCCCTGATGTGGGTACTGGA  750

seq1  AATGGAGCTCAGATCCACCGAAGAGCAGCACACAGAACCATCTCTCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCTCAGATCCACCGAAGAGCAGCACACAGAACCATCTCTCCAGC  800

seq1  TCCACCACTCAGCTTCTCAAGAACATGAGATATTTTTATAATTGACCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACTCAGCTTCTCAAGAACATGAGATATTTTTATAATTGACCCTT  850

seq1  TGAGTTGTGACCTCTGCCAGGAACCCTCTACATC-TTTATCAGACTTGAA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAGTTGTGACCTCTGCCAGGAACCCTCTACATCTTTTATCAGACTTGAA  900

seq1  TTTGTTCTTTAGGATCCCTGAAATCACCATTCCCCCCAACAGATC-TCCT  948
      ||||||||||||||||||||||||||||||||||||  ||||||| ||||
seq2  TTTGTTCTTTAGGATCCCTGAAATCACCATTCCCCC--ACAGATCTTCCT  948

seq1  TTCTTTGTATATTTACATGAATTTGCTTTTATCCCTGAACCTTAACTTTA  998
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCTTTGTATATTTACATGAATTTGCTTTTATCCCTGAACC-TAACTTTA  997

seq1  GTTGACTTATTCATCTGTATTCT-CCCACTTGTTATGGCTG-CCATCTTG  1046
      | |||||   ||||||||||||| ||||||||||  ||||| |||||   
seq2  G-TGACT--ATCATCTGTATTCTCCCCACTTGTTTAGGCTGCCCATC---  1041

seq1  GTATAGTTTCAGGCCTCTGTCAAAGAGTTATAATATTAACTATG  1090
       |  ||||||| ||||||||| ||||||||||| ||  ||||||
seq2  -TGAAGTTTCA-GCCTCTGTC-AAGAGTTATAA-AT--ACTATG  1079