BAC Information

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BAC

Clone NameB6Ng01-107P09
Chromosome5 (Build37)8 (Build37)
Map Location 101,189,987 - 101,191,0029,554,676 - 9,555,234
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse
Downstream geneHel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107P09.bB6Ng01-107P09.g
ACCDH915274DH915275
length1,079855
definitionDH915274|Mus musculus domesticus DNA, BAC clone: B6Ng01-107P09, 5' end.DH915275|Mus musculus domesticus DNA, BAC clone: B6Ng01-107P09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,189,987 - 101,191,002)(9,554,676 - 9,555,234)
sequence
gaattctgttcaatacaactttcctgacctcaaatctttgctctggggtt
gactggatggttaccttctcccctcccacctggtgtcttgttcttgctga
cctgggcatacgactgacagtctggctttgtgtctgtgatggaatggatt
cctaggtggggtgatccctgaatgacctttacttctgtctctgctcctct
cttaatccctggttttccttatgaatggaacccttctgggttaaaaattg
tgaaatggataggtggccccatccctcagcctgtagccttgtctatccat
tgcctgttatagctatcccctgagaggctctgccgcaacctgaccaatac
tgatgtggaggttcgcaaccaaccatctatctgatcacagggaccccaat
ggaagagttggggggaggacctaaagacctgaacggatttgctaccccgt
gcgaacaacaaaaatatcaactgttacgaccttccagacctcccagggac
aaaaccaccaaccaaaaaatacacatggaaggatccatgggtccagctgt
atatgtatcaaagaatggccttatctggcacacatggaagggaagggcca
tggtcctgtgaaggctttatgctccacaccccgctgggattctgtgacag
tgaggtggaggtggagggtagcctttacagggtgctccccactgagcact
gtgaagttaccccatactcatccccgtagcccttacagggtgctccccac
tgagcactgtgaagttactccatactcatccccgtagcccttacagggtg
ctccccactgagcactgtgaagtactccatactcatccctgtagccctta
cagggtgctccccactgagcatttcaggttttcttttcctttcgctgtat
ttcaggaatgtttctattgttttcactaataacgtttgtgccaccttagc
attcaccaccattttacagaataagattgtcttgtggggagaccacgtta
acaatttgagactctgggtttttttattttattaactctaattattagaa
aaaaataacctgcaaatgattaagtacac
gaattcctgatatttccgcaacttgaataccgtctgggtgttggatagtg
gagaaggcgttttctgcatctttcaaaatgaccccgtgctcttctgctta
aaacttgttggtatcccggatcccgttcatggatttgattgccaacttca
tcattgcctccatgcaataaacccgacttgtttctgactgattattgaag
gaatgtgagtttgggtcttctctgctacatgaagcttgagggcagcttgg
gctatgggagaccttgcctggtctgaagaggaggaggaggaggggatctt
tctgtggtttaggtatcagagtaatagtggcttcataaaatgagttgggt
agaataccttctacttctatcttgtgaaaaagtttgtgcagaagtggagt
tagatcttctttgaaggtctgatagaactctgcactaaacccgtctggtc
ctgggctttttttggctgggagactattaataactgcttctatttcttta
ggggatatgggactgtttagaaggtcaacttgatcctgattcaactttgg
tacctggtatctgtccagaaatttgtccatttcgtccaggttttccagtt
ttgttgagtatagccttttgtagaaggatctgatggtgttttggatttct
tcaggatctgttgttatgtctcccttttcatttctgattttgttaattag
gattttgtccctgtgccctttagtgagtgtagctagggtttatctatctt
gttgatttttctcaaagaaccaactcctcgtttggttaattctttgaata
gttcttcttgtttcccacttgggttgatttcaccccctgagtttgattat
ttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_101189987_101191002
seq2: B6Ng01-107P09.b_104_1122 (reverse)

seq1  GTGTGCTTAATCATTTGCAAGTT-TTTTTTTCTAATAA-TAGAGTTTATA  48
      |||| |||||||||||||| ||| |||||||||||||| ||||||| |||
seq2  GTGTACTTAATCATTTGCAGGTTATTTTTTTCTAATAATTAGAGTTAATA  50

seq1  AAATAAAAAAA-CCAGAGTCTTCAAATTGTTAACGTGGTTCTCCCCAC-A  96
      ||||||||||| |||||||| ||||||||||||||||| ||||||||| |
seq2  AAATAAAAAAACCCAGAGTC-TCAAATTGTTAACGTGG-TCTCCCCACAA  98

seq1  GACATTCTTATTCTGT-AAATGGTGGTGTATGCT-AGGTGGCACAAACGT  144
      |||| ||||||||||| ||||||||||| ||||| |||||||||||||||
seq2  GACAATCTTATTCTGTAAAATGGTGGTGAATGCTAAGGTGGCACAAACGT  148

seq1  TATTAGTGAAAAC-ATAG-AACATTCCTGAAATAACAGCGAAAGGAAAAG  192
      ||||||||||||| |||| |||||||||||||| ||||||||||||||||
seq2  TATTAGTGAAAACAATAGAAACATTCCTGAAAT-ACAGCGAAAGGAAAAG  197

seq1  AAAACCTGGAATGCTCAGTGGGGAGCACCCTGTAAGGGCTACAGGGATGA  242
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGAAATGCTCAGTGGGGAGCACCCTGTAAGGGCTACAGGGATGA  247

seq1  GTATGGAGTAACTTCACAGTGCTCAGTGGGGAGCACCCTGTAAGGGCTAC  292
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGT-ACTTCACAGTGCTCAGTGGGGAGCACCCTGTAAGGGCTAC  296

seq1  GGGGATGAGTATGGAGTAACTTCACAGTGCTCAGTGGGGAGCACCCTGTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGAGTATGGAGTAACTTCACAGTGCTCAGTGGGGAGCACCCTGTA  346

seq1  AGGGCTACGGGGATGAGTATGGGGTAACTTCACAGTGCTCAGTGGGGAGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACGGGGATGAGTATGGGGTAACTTCACAGTGCTCAGTGGGGAGC  396

seq1  ACCCTGTAAAGGCTATGGGGATGAGTATGGGGTAACT-TCACAG------  435
      |||||||||||||||        |        | ||| ||||||      
seq2  ACCCTGTAAAGGCTA--CCCTCCACCTCCACCTCACTGTCACAGAATCCC  444

seq1  TGCTCAGTGGGGAGCA-----CCCTGTAAGGGCTATGGGGATGAGTATGG  480
       ||   ||| ||||||     || |   ||| | ||||   |        
seq2  AGCGGGGTGTGGAGCATAAAGCCTTCACAGGACCATGGCCCT--------  486

seq1  GGTAACTTCACA---GTGCTCAGTGGGGAGCACCCTGTAAGGGCTA----  523
        |  |||| ||   |||| |||    |  ||  || | |    ||    
seq2  --TCCCTTC-CATGTGTGC-CAGATAAGGCCATTCTTTGATACATATACA  532

seq1  --TGG------GGATGAGT--ATGGGGTAACTTCACAGTGCTCAGTGGGG  563
        |||      ||||   |  || | |||  ||     || |  ||||  
seq2  GCTGGACCCATGGATCCTTCCAT-GTGTATTTT----TTGGTTGGTGGTT  577

seq1  AGCACCCTGTAAGGGCT--ATGG--GGATGAGTATGGGGTAACTTCACAG  609
          |||||  ||| ||  | ||  | |  |||    | ||  ||    |
seq2  TTGTCCCTGGGAGGTCTGGAAGGTCGTAACAGT---TGATATTTTTGTTG  624

seq1  TGCTCAGTGGGGAGC--ACCCTGTAAGGGCTATGGGGATGAGTATGGGGT  657
      | | ||  ||| |||  | ||  | ||| |            | | ||  
seq2  TTCGCACGGGGTAGCAAATCCGTTCAGGTC------------TTTAGGTC  662

seq1  AACTTCACAGTGCT--CAGTGGGGAGCACCCTGT-AAGGGCTATGGGGAT  704
        |  | ||   ||  || |||||    |||||| |   | ||   || |
seq2  CTCCCCCCAACTCTTCCATTGGGG---TCCCTGTGATCAGATAGATGGTT  709

seq1  GAGTATGGGGTAACTTCAC------AGTGCTCAG--TGGGGAGCACCCTG  746
      |    | | | | || |||      | || ||||  || ||   | ||| 
seq2  G---GTTGCGAACCTCCACATCAGTATTGGTCAGGTTGCGGCAGAGCCTC  756

seq1  TAAGGGCTACGGGGATGAGTGCGGAGTAACTTCACAGAGATAGGATTTGA  796
      | ||||  |  |  || |  | | | |   |  |||  | ||     |||
seq2  TCAGGG-GATAGCTATAACAG-GCAATGGATAGACAAGGCTACAGGCTGA  804

seq1  GTATTGAGTTGACACTAGAAGTATATTAACACTTTCATACAATGATGATA  846
      |   || |   || |||    |   || ||| |||   ||   || |   
seq2  GGGATGGGGCCAC-CTATCCAT---TTCACAATTTTTAACCCAGAAGGGT  850

seq1  ACACATCAGTTAGGACACACAGGGTTCTGGTAATTTTGGTGCA-------  889
       | |||   | |||| |  ||||| |    |||    || |||       
seq2  TC-CATTCATAAGGAAAACCAGGGAT----TAAGAGAGGAGCAGAGACAG  895

seq1  AACTGATGGGCGAAATGAGGGTGACAGCTGAGCTTACAACGCA--GCACC  937
      || | | || |  | | ||||   || |  | ||   ||  ||   || |
seq2  AAGTAAAGGTC--ATTCAGGG-ATCACCCCACCTAGGAATCCATTCCATC  942

seq1  ACAG-CACAAGTCAGCACGTGTGTCAGTCGTTGGCACCTGTCAGCAAGAA  986
      |||| |||||   |||  |  ||||||||||  || |  |||||||||||
seq2  ACAGACACAA---AGCCAGACTGTCAGTCGTATGCCCAGGTCAGCAAGAA  989

seq1  CAAGACACCAGGGGGGCGGGGAGAAGGTAA  1016
      |||||||||||| ||| |||||||||||||
seq2  CAAGACACCAGGTGGGAGGGGAGAAGGTAA  1019

seq1: chr8_9554676_9555234
seq2: B6Ng01-107P09.g_359_920 (reverse)

seq1  AGGAAATAATCAAACTCA-GGGGTGAAATCAA-CCAAGT-GGAAACAAGA  47
      | |||||||||||||||| ||||||||||||| |||||| ||||||||||
seq2  AAGAAATAATCAAACTCAGGGGGTGAAATCAACCCAAGTGGGAAACAAGA  50

seq1  AGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAG-AAAA  96
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAA  100

seq1  TCAACAAGATAGATAAACCCTTAGCTACACTCACTAAAGGGCACAGGGAC  146
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAACAAGATAGATAAACCC-TAGCTACACTCACTAAAGGGCACAGGGAC  149

seq1  AAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGA  199

seq1  TCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT  249

seq1  CAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATAC  299

seq1  CAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCAT  349

seq1  ATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAA  399

seq1  GCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA  449

seq1  GATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGG  496
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATCTAACTCCACTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGG  499

seq1  TATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAAC  549

seq1  CACAGAAAGATCC  559
      |||||||||||||
seq2  CACAGAAAGATCC  562