BAC Information

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BAC

Clone NameB6Ng01-108A11
Chromosome5 (Build37)
Map Location 105,563,863 - 105,695,149
singlet/doubletdoublet
Overlap geneGbp4, LOC675363, LOC626578
Upstream geneLOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170
Downstream geneMpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108A11.bB6Ng01-108A11.g
ACCDH915323DH915324
length1,0831,085
definitionDH915323|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A11, 5' end.DH915324|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,563,863 - 105,564,937)(105,694,035 - 105,695,149)
sequence
gaattcctagtgttgaataaacttctatcacactgaatcaaatcatttgc
ccaaatggcaagaaataaaagcatgttttgcctatcagaatattcctaaa
ctctgagagtgaagtctaaatagggcactctttacctctccggtggcagt
tcagtcagaattcacacatagattatagttagataacaagggcacagaag
ggccagcctgagcctcatcctaccttttccacatcgcccaggccctcggt
gtccaggaggaccagtgctctggcttggtggggtggggcatgcaccacat
ccagatgcccttggtctgagactgcacggtggagcccagagggaaacctg
aagggaagagaggagaaagaaagtcaggatgtgagtgtcctgtacaggtg
gccttgtgtgctaaaacctcggtgccaagctgccagcattattgggaggg
attctgaaggttttaggacttcaagcccagtgaaggatgcaggtaactag
agaagggattttgaaggttataactcagtttctgcccgccacttctgtta
agcgagacccacgatcttctgttaagcgagacccacgatcaatgaaccaa
gaactatggagtaaaatctaagtcaggataagtgcctcctcattaaggtt
acttcttgagtgttgtggtcacagccttgaaaaagtacaaagagggagct
atgcctgtgaagattggatgtaagtagcagaatggagggagtgttgtgag
tacctcagcacatgaaatggtgccctgtctcccctcaagaagctcttcct
ttataattccttcatttcaagtcataaggaacatataataggagaacaaa
gccacacaaggtctccagatggaaacaaataggcacccacaaggcagaaa
acatagagtgctctggcaaatgcacagtgtttggtgcatccatggctgta
cacacatgcaatccttatacgtagaggacacacacgagagggttgccagt
attttgagagtcactaggatcaatggctagagccagccgaacacagacga
tgaatgaagaagaatgaaagaaagaagaaagaa
gaattcagtagagggcttcagatgtcctggaattggaattagagatggtt
gtaagcctccatgtgtgtgctggggacagagtccatgtcctttgccggag
ccagtgctcttaacctttgaccatctctgtacctctaatagagaaattat
ttcttaagaagacctttgggagttctaaccatgccaaacccgtaccaact
tacaaggttctgaaaatattcatatgctttatgtatttaaatgaacttca
tgtggcttagcctctcaactttgtcttttcccttcaaatttcatgttaat
gtggaagtgttttttgtgaactactattattattttcaaaagtagataat
ttgttttctaccagtgtattagttctctgagaattttatacaattgattt
tcatcccatatcaactcaccttcatcctttccccacccacccaacttctt
gtcttttctctccatcccatgaaggacaggttgtgctgtccatatactcc
agggtgcattttattctctagagtgtgatcaacccaccagaggctgcaac
attaaagaataaaaatctgactcttttccccagttaccatgactccttag
ctaggggtgaaacattgtgtccctgtttcctctccacactggatttcctt
ctggcctggaccaacagaggtaataacctatgtttaatgttagagtccag
ggaagagtggaattaagtgtaaacctgaacatgcaggctctgacagtcag
agtaagtagagctatacatgtgttcatgtcttttggtgttaggattaaaa
attaccagaaacaaagagggtgacttaaaactaaagaaattgtttcttag
ctttggactctgggacttcaaatcagagtaccaacatgctggtgtctggg
gagttgtcatttaggtcatgaccactgacttatgggtctctcacactatg
ggaggccagtgagtgtcttagaagcttttgtagacagcatcagccacaaa
cctctgcactgcatttaaacatccatgaagctcacatctgtggagttgat
tcaaggactgattctaagaagacatttattccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_105563863_105564937
seq2: B6Ng01-108A11.b_45_1127

seq1  GAATTCCTAGTGTTGAATAAACTTCTATCACACTGAATCAAATCATTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTGTTGAATAAACTTCTATCACACTGAATCAAATCATTTGC  50

seq1  CCAAATGGCAAGAAATAAAAGCATGTTTTGCCTATCAGAATATTCCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGCAAGAAATAAAAGCATGTTTTGCCTATCAGAATATTCCTAAA  100

seq1  CTCTGAGAGTGAAGTCTAAATAGGGCACTCTTTACCTCTCCGGTGGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAGTGAAGTCTAAATAGGGCACTCTTTACCTCTCCGGTGGCAGT  150

seq1  TCAGTCAGAATTCACACATAGATTATAGTTAGATAACAAGGGCACAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGAATTCACACATAGATTATAGTTAGATAACAAGGGCACAGAAG  200

seq1  GGCCAGCCTGAGCCTCATCCTACCTTTTCCACATCGCCCAGGCCCTCGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGAGCCTCATCCTACCTTTTCCACATCGCCCAGGCCCTCGGT  250

seq1  GTCCAGGAGGACCAGTGCTCTGGCTTGGTGGGGTGGGGCATGCACCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAGGACCAGTGCTCTGGCTTGGTGGGGTGGGGCATGCACCACAT  300

seq1  CCAGATGCCCTTGGTCTGAGACTGCACGGTGGAGCCCAGAGGGAAACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCCCTTGGTCTGAGACTGCACGGTGGAGCCCAGAGGGAAACCTG  350

seq1  AAGGGAAGAGAGGAGAAAGAAAGTCAGGATGTGAGTGTCCTGTACAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGAGAGGAGAAAGAAAGTCAGGATGTGAGTGTCCTGTACAGGTG  400

seq1  GCCTTGTGTGCTAAAACCTCGGTGCCAAGCTGCCAGCATTATTGGGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGTGCTAAAACCTCGGTGCCAAGCTGCCAGCATTATTGGGAGGG  450

seq1  ATTCTGAAGGTTTTAGGACTTCAAGCCCAGTGAAGGATGCAGGTAACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAGGTTTTAGGACTTCAAGCCCAGTGAAGGATGCAGGTAACTAG  500

seq1  AGAAGGGATTTTGAAGGTTATAACTCAGTTTCTGCCCGCCACTTCTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGATTTTGAAGGTTATAACTCAGTTTCTGCCCGCCACTTCTGTTA  550

seq1  AGCGAGACCCACGATCTTCTGTTAAGCGAGACCCACGATCAATGAACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGACCCACGATCTTCTGTTAAGCGAGACCCACGATCAATGAACCAA  600

seq1  GAACTATGGAGTAAAATCTAAGTCAGGATAAGTGCCTCCTCATTAAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATGGAGTAAAATCTAAGTCAGGATAAGTGCCTCCTCATTAAGGTT  650

seq1  ACTTCTTGAGTGTTGTGGTCACAGCCTTGAAAAAGTACAAAGAGGGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGAGTGTTGTGGTCACAGCCTTGAAAAAGTACAAAGAGGGAGCT  700

seq1  ATGCCTGTGAAGATTGGATGTAAGTAGCAGAATGGAGGGAGTGTTGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGAAGATTGGATGTAAGTAGCAGAATGGAGGGAGTGTTGTGAG  750

seq1  TACCTCAGCACATGAAATGGTGCCCTGTCTCCCCTCAAGAAGCTCTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGCACATGAAATGGTGCCCTGTCTCCCCTCAAGAAGCTCTTCCT  800

seq1  TTATAATTCCTTCATTTCAAGTCATAAGGAACATATAATAGGAGAACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTCCTTCATTTCAAGTCATAAGGAACATATAATAGGAGAACAAA  850

seq1  GCCACACAAGGTCTCCAGATGGAAACAAATAGGCACCCACAAGGCAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAAGGTCTCCAGATGGAAACAAATAGGCACCCACAAGGCAGAAA  900

seq1  ACATAGAGTGCTCTGGCAAATGCACAGTGTTTGGTGCATCCATGGCTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGTGCTCTGGCAAATGCACAGTGTTTGGTGCATCCATGGCTGTA  950

seq1  CACACATGCAATCCTTATACGTAGAAGACACACACGAGAGGGTTGCCAGT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACACATGCAATCCTTATACGTAGAGGACACACACGAGAGGGTTGCCAGT  1000

seq1  ATTTTGAGAGTCACTAGGATCCAATGGCTAGAGCCAAGCCGAACA---AC  1047
      |||||||||||||||||||| |||||||||||||| |||||||||   ||
seq2  ATTTTGAGAGTCACTAGGAT-CAATGGCTAGAGCC-AGCCGAACACAGAC  1048

seq1  --------AAGACGAAAGAAAGAAAGAAAGAAAGAA  1075
              |||| ||| ||||||||| |||||||||
seq2  GATGAATGAAGAAGAATGAAAGAAAG-AAGAAAGAA  1083

seq1: chr5_105694035_105695149
seq2: B6Ng01-108A11.g_68_1152 (reverse)

seq1  AATGGAATAAAAATATGTCTTCCTCAGAAATTCAGTCCTTGGACTCAACT  50
      ||||||||||    ||||||| || ||||  ||||||||| || ||||||
seq2  AATGGAATAA----ATGTCTT-CTTAGAA--TCAGTCCTT-GAATCAACT  42

seq1  CCACAGGATGTGGAGCTTTTCATGAGATGTTTAAGTGGCAGGTGCAGAGG  100
      ||||| ||||| ||||  |||||| ||||||||| | ||| |||||||||
seq2  CCACA-GATGT-GAGC--TTCATG-GATGTTTAAAT-GCA-GTGCAGAGG  85

seq1  TTTTGTGGCTGGAATTGCTGTTCTTACAAAAGCTTCTAAGACAACTCACT  150
       ||||||||||    ||||||   |||||||||||||||||| |||||||
seq2  -TTTGTGGCTG---ATGCTGT--CTACAAAAGCTTCTAAGAC-ACTCACT  128

seq1  GGCCCTCCCATAGTGTGAGGAGACACCATAAGTCAGTGGTCATTGACCTA  200
      || ||||||||||||||| ||||| ||||||||||||||||| |||||||
seq2  GG-CCTCCCATAGTGTGA-GAGAC-CCATAAGTCAGTGGTCA-TGACCTA  174

seq1  AATGACAACTCCCCAGACACCAGCATGTTGGTACTCTGATTTTGAAGTCC  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATGACAACTCCCCAGACACCAGCATGTTGGTACTCTGA-TTTGAAGTCC  223

seq1  CAGAGTCCAAAGCTAAGAAACAATTTTCTTTTAGTTTTAAGTTCACCCTC  300
      ||||||||||||||||||||||||||   |||||||||||| ||||||||
seq2  CAGAGTCCAAAGCTAAGAAACAATTT--CTTTAGTTTTAAG-TCACCCTC  270

seq1  TTTGTTTCTGGTAATTTTTAATCCTAACACCAAAAGACATGAACACATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTGGTAATTTTTAATCCTAACACCAAAAGACATGAACACATGT  320

seq1  ATAGCTCTACTTACTCTGACTGTCAGAGCCTGCATGTTCAGGTTTACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTACTTACTCTGACTGTCAGAGCCTGCATGTTCAGGTTTACACT  370

seq1  TAATTCCACTCTTCCCTGGACTCTAACATTAAACATAGGTTATTACCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCACTCTTCCCTGGACTCTAACATTAAACATAGGTTATTACCTCT  420

seq1  GTTGGTCCAGGCCAGAAGGAAATCCAGTGTGGAGAGGAAACAGGGACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCCAGGCCAGAAGGAAATCCAGTGTGGAGAGGAAACAGGGACACA  470

seq1  ATGTTTCACCCCTAGCTAAGGAGTCATGGTAACTGGGGAAAAGAGTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCACCCCTAGCTAAGGAGTCATGGTAACTGGGGAAAAGAGTCAGA  520

seq1  TTTTTATTCTTTAATGTTGCAGCCTCTGGTGGGTTGATCACACTCTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCTTTAATGTTGCAGCCTCTGGTGGGTTGATCACACTCTAGAG  570

seq1  AATAAAATGCACCCTGGAGTATATGGACAGCACAACCTGTCCTTCATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGCACCCTGGAGTATATGGACAGCACAACCTGTCCTTCATGGG  620

seq1  ATGGAGAGAAAAGACAAGAAGTTGGGTGGGTGGGGAAAGGATGAAGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGAAAAGACAAGAAGTTGGGTGGGTGGGGAAAGGATGAAGGTGA  670

seq1  GTTGATATGGGATGAAAATCAATTGTATAAAATTCTCAGAGAACTAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATGGGATGAAAATCAATTGTATAAAATTCTCAGAGAACTAATAC  720

seq1  ACTGGTAGAAAACAAATTATCTACTTTTGAAAATAATAATAGTAGTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGAAAACAAATTATCTACTTTTGAAAATAATAATAGTAGTTCAC  770

seq1  AAAAAACACTTCCACATTAACATGAAATTTGAAGGGAAAAGACAAAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACTTCCACATTAACATGAAATTTGAAGGGAAAAGACAAAGTTG  820

seq1  AGAGGCTAAGCCACATGAAGTTCATTTAAATACATAAAGCATATGAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTAAGCCACATGAAGTTCATTTAAATACATAAAGCATATGAATAT  870

seq1  TTTCAGAACCTTGTAAGTTGGTACGGGTTTGGCATGGTTAGAACTCCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAACCTTGTAAGTTGGTACGGGTTTGGCATGGTTAGAACTCCCAA  920

seq1  AGGTCTTCTTAAGAAATAATTTCTCTATTAGAGGTACAGAGATGGTCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCTTAAGAAATAATTTCTCTATTAGAGGTACAGAGATGGTCAAA  970

seq1  GGTTAAGAGCACTGGCTCCGGCAAAGGACATGGACTCTGTCCCCAGCACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGCACTGGCTCCGGCAAAGGACATGGACTCTGTCCCCAGCACA  1020

seq1  CACATGGAGGCTTACAACCATCTCTAATTCCAATTCCAGGACATCTGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAGGCTTACAACCATCTCTAATTCCAATTCCAGGACATCTGAAG  1070

seq1  CCCTCTACTGAATTC  1115
      |||||||||||||||
seq2  CCCTCTACTGAATTC  1085