BAC Information

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BAC

Clone NameB6Ng01-108C13
Chromosome5 (Build37)
Map Location 150,972,510 - 151,132,503
singlet/doubletdoublet
Overlap geneLOC667470, Fry
Upstream geneEG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2
Downstream geneLOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108C13.bB6Ng01-108C13.g
ACCDH915417DH915418
length760107
definitionDH915417|Mus musculus domesticus DNA, BAC clone: B6Ng01-108C13, 5' end.DH915418|Mus musculus domesticus DNA, BAC clone: B6Ng01-108C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,972,510 - 150,973,267)(151,132,397 - 151,132,503)
sequence
gaattcttttttttttttccatttttttcaagacagggtttctctgtgta
gccctggctgtcctggaactcactctgtagaccaggctggcctcaaactc
agagatacacctgcctctgcctcccaagtgctgggattaaagccatgtgc
caccactgcccagcttatccctgaattctttgaacaaggctgacagagtc
tttgttaatactactgattaaactaaaatcagataactctgcccaacatg
tataattccatcccaatatatattggaataactgacctaaatctttaatt
gtttggacactgtaaggaaagagtaggcataaggagtgtttttattgttg
ttttggagggttttgttttgttattttttttttccaaatatgtctttctc
cctgtaaatgacgtggttcctccagtttcatgggtaacttttgctggaag
agaagttcactttcttttcttttttttaaaacattttttaaattttattt
attattatacaataagtacaatgtaggtgacttcagacacaccagaagag
ggcatcagatctcattacagatggttgtaagctaccctgtggttgctagg
atttgaactcagtacctttcggaatagcagtcagtgctcttaacctctca
gccatctcgacagccagcagttcactttttgtaactgcagaagcacctct
cgagcccccagggccagtgaaaccaaatagattcactttttttatagcca
tcaccaacct
atataactctaaatccaggaatcttcctcaaccttttaggtatctttttt
ggttttttttttttgttgttgttgttgttgttttgttttgtgtttggttg
gttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_150972510_150973267
seq2: B6Ng01-108C13.b_49_808

seq1  GAATTCTTTTTTTTTTTTCCATTTTTTTCAAGACAGGGTTTCTCTGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTTTCCATTTTTTTCAAGACAGGGTTTCTCTGTGTA  50

seq1  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTC  100

seq1  AGAGATACACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGCCATGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGCCATGTGC  150

seq1  CACCACTGCCCAGCTTATCCCTGAATTCTTTGAACAAGGCTGACAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGCCCAGCTTATCCCTGAATTCTTTGAACAAGGCTGACAGAGTC  200

seq1  TTTGTTAATACTACTGATTAAACTAAAATCAGATAACTCTGCCCAACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAATACTACTGATTAAACTAAAATCAGATAACTCTGCCCAACATG  250

seq1  TATAATTCCATCCCAATATATATTGGAATAACTGACCTAAATCTTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCCATCCCAATATATATTGGAATAACTGACCTAAATCTTTAATT  300

seq1  GTTTGGACACTGTAAGGAAAGAGTAGGCATAAGGAGTGTTTTTATTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGACACTGTAAGGAAAGAGTAGGCATAAGGAGTGTTTTTATTGTTG  350

seq1  TTTTGGAGGGTTTTGTTTTGTTATTTTTTTTTTCCAAATATGTCTTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGGGTTTTGTTTTGTTATTTTTTTTTTCCAAATATGTCTTTCTC  400

seq1  CCTGTAAATGACGTGGTTCCTCCAGTTTCATGGGTAACTTTTGCTGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAATGACGTGGTTCCTCCAGTTTCATGGGTAACTTTTGCTGGAAG  450

seq1  AGAAGTTCACTTTCTTTTCTTTTTTTTAAAACATTTTTTAAATTTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCACTTTCTTTTCTTTTTTTTAAAACATTTTTTAAATTTTATTT  500

seq1  ATTATTATACAATAAGTACAATGTAGGTGACTTCAGACACACCAGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATACAATAAGTACAATGTAGGTGACTTCAGACACACCAGAAGAG  550

seq1  GGCATCAGATCTCATTACAGATGGTTGTAAGCTACCCTGTGGTTGCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGATCTCATTACAGATGGTTGTAAGCTACCCTGTGGTTGCTAGG  600

seq1  ATTTGAACTCAGTACC-TTCGGAAGAGCAGTCAGTGCTCTTAACCTCTCA  649
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  ATTTGAACTCAGTACCTTTCGGAATAGCAGTCAGTGCTCTTAACCTCTCA  650

seq1  GCCATCTCGACAGCCAGCAGTTCAC-TTTTGTAACTGCAGAAGCACCTCT  698
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCATCTCGACAGCCAGCAGTTCACTTTTTGTAACTGCAGAAGCACCTCT  700

seq1  CGAGCCCCCA-GGCCAGTGAAACCAAATAGATTCACTTTATTTTATAGCC  747
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  CGAGCCCCCAGGGCCAGTGAAACCAAATAGATTCACTTT-TTTTATAGCC  749

seq1  ATCACCAACCT  758
      |||||||||||
seq2  ATCACCAACCT  760

seq1: chr5_151132397_151132503
seq2: B6Ng01-108C13.g_73_179 (reverse)

seq1  AACCAACCAACCAAACACAAAACAAAACAACAACAACAACAACAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACCAACCAAACACAAAACAAAACAACAACAACAACAACAAAAAAA  50

seq1  AAAAACCAAAAAAGATACCTAAAAGGTTGAGGAAGATTCCTGGATTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAAAAGATACCTAAAAGGTTGAGGAAGATTCCTGGATTTAGA  100

seq1  GTTATAT  107
      |||||||
seq2  GTTATAT  107