BAC Information

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BAC

Clone NameB6Ng01-108D10
Chromosome5 (Build37)
Map Location 15,185,644 - 15,186,701
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108D10.bB6Ng01-108D10.g
ACCDH915455DH915456
length1,1471,118
definitionDH915455|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D10, 5' end.DH915456|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggaagagaagcacctgaaaaaatg
ttcaacatttttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttcttgcaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccggaggatcctacaatacctctcctggg
catatatccagaagatgtcccaaccggtaagaagaacacatgctccacta
tgttcatagcagccttgtttataatagccagaagctggaaagaacctaga
tgcccctcgacagaggaatgtacacagaaaatgaggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggatattagcccaaaac
ctaggatacccaagatataagatacaatttcctaaacacatgaaactcaa
gaaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggt
aaaaaacacccatggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatctagagactgccatatccagggatccaccccataat
cagcatccaaactctgacaccattgcatacactagcaagattttattgaa
aggacccagatgtagctgtctcttgtgagactatgccgggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaagtacccagagctaaagggatctgaaaccctatag
tggaacaacatatgactacagtaccccgagctctgactctagctgcatat
gttcaagatgctagtcgcatcacttgaagagagtcaatgaaacgcaactt
tatgcccagtacaggacgcaggcaaaggaagtggtgggtaggtattg

gaattcatatcttatttccataaaacatatatgctgtagcatacataaat
acacacaaacacacatacacacatgcacacatacacacatacacacatac
acacatacacacacacacatacacgcacatacacacatacaaacatacac
acatacacacacatacacacacatacacacatacaaacatacacacatac
acacatacaattggtttgtctgtttagttttggatgggttcgaggtgtgg
ttgttgttggtttgtttttgaaacagagtctgtctatgtagccttggctg
tcatggaatttgctttgtaaaccaggctggcctcaaattcagagattctc
ctttttctgtcttgagacctaatagtcaagtctccacgcccagcagtttg
aattgctggattaaagattttggacatttgtctactttatcttttctatt
aagatagaaagaagatagcctattattcaaattaactcagaaaattattt
tatagtcagtcatggctggaatgcagatataaaaaatcagattgtttgga
actgaaaaaaaaagataaaaagtttaagaaactctttaaaaatttccctt
ttcaaaactggctggccattcatacagctcatgaatcttaaggtttaaca
atataagtgagtagcctcagcttatttcagtttgtcttaaatttaattta
ggtttaatcatgtgtctatagacctgtacttttatcatcgtgttattttt
ccttataacttaactgttaacattaatagaccttaaaaaaaataaataca
tttaaatctgatgagcacaagatgttcagaattgttagcaaacatcttgc
ttgttgttactgtagcttctaggccccagtacagccattctggggatttc
tgttagtaccgaaacgactatgaattgccttgcttatctggtgtcttacc
atcacagagattcaagtgactgaaaagaaaggaatgaaacagaattggat
cagttctggatgagcgtgagcaattgagctcagatcactcaagctagcta
accgaaaccctcctcacagaggttccgatgttatggaagactcgccccat
actggctcataagtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15185644_15186701
seq2: B6Ng01-108D10.g_68_1185

seq1  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAGCATACAT----  46
      ||||||| ||||||||||||||||||||||||||||||||||||||    
seq2  GAATTCATATCTTATTTCCATAAAACATATATGCTGTAGCATACATAAAT  50

seq1  ----------------------------ACATACACACATACACACACAC  68
                                  ||||||||||||||||||| ||
seq2  ACACACAAACACACATACACACATGCACACATACACACATACACACATAC  100

seq1  ACACAT--------------------------------------------  74
      ||||||                                            
seq2  ACACATACACACACACACATACACGCACATACACACATACAAACATACAC  150

seq1  ----------------ACACATATACACATATACACACATACACACATAC  108
                      ||||| ||||||| ||||| ||||||||||||||
seq2  ACATACACACACATACACACACATACACACATACAAACATACACACATAC  200

seq1  ACACATACAATTGGTTTGTCTGTTTAGTTTTGGTTGGGTTTGAGGTGTGG  158
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  ACACATACAATTGGTTTGTCTGTTTAGTTTTGGATGGGTTCGAGGTGTGG  250

seq1  TTGTTGTTGGATTGTTTTTGAAACAGAGTCTGTCTATGTAGCCTTGGCTG  208
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGGTTTGTTTTTGAAACAGAGTCTGTCTATGTAGCCTTGGCTG  300

seq1  TCATGGAATTTGCTTTGTAAACCAGGCTGGCCTCAAATTCAGAGATTCAC  258
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCATGGAATTTGCTTTGTAAACCAGGCTGGCCTCAAATTCAGAGATTCTC  350

seq1  CTTCTTCTGTCTTCTGAGACCGAATAGTCAAGTCTCCACGCCCAGCAGTT  308
      ||| ||||||||  ||||||| ||||||||||||||||||||||||||||
seq2  CTTTTTCTGTCT--TGAGACCTAATAGTCAAGTCTCCACGCCCAGCAGTT  398

seq1  TGAATTGTTGGATTAAAGATTTTGGACATTTGTCTACTTTATCTTTTCTA  358
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGCTGGATTAAAGATTTTGGACATTTGTCTACTTTATCTTTTCTA  448

seq1  TTAAGATAGAAAGAAGATAGCCTATTATTCAAATTTACTCAGAAAATTAT  408
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAAGATAGAAAGAAGATAGCCTATTATTCAAATTAACTCAGAAAATTAT  498

seq1  TTTATAGTCAGTCATGGCTGGAATGCAGATATAAAAAAATCAGATTGTTT  458
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTATAGTCAGTCATGGCTGGAATGCAGATAT-AAAAAATCAGATTGTTT  547

seq1  GGAACTGAAAAAAAAAGATAAAAAGTTTAAGAAACTCTTTAAAAATTTCC  508
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGAAAAAAAAAGATAAAAAGTTTAAGAAACTCTTTAAAAATTTCC  597

seq1  CTTTTCAAAACTGGCTGGCCATTCATACAGCTCATGAATCTTAAGGTTTA  558
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAAACTGGCTGGCCATTCATACAGCTCATGAATCTTAAGGTTTA  647

seq1  ACAATATAAGTGAGTAGCCTCAGCTTATTTCAGTTTGTCTTAAATTTAAT  608
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAAGTGAGTAGCCTCAGCTTATTTCAGTTTGTCTTAAATTTAAT  697

seq1  TTAGGTTTAATCATGTGTCTATAAACCTGTACTTTTATCATCGTGTTATT  658
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAGGTTTAATCATGTGTCTATAGACCTGTACTTTTATCATCGTGTTATT  747

seq1  TTTCCTTATAACTTAACTGTTAACATTAATAGACCTTAAAAAAAATAAAT  708
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTATAACTTAACTGTTAACATTAATAGACCTTAAAAAAAATAAAT  797

seq1  ACATTTAAATCCGATGAGCACAAGATGTTCAGAATTGTTAGCAAACGTCT  758
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  ACATTTAAATCTGATGAGCACAAGATGTTCAGAATTGTTAGCAAACATCT  847

seq1  TGCTT-TTGTTACTGTAGCTTCTAGGCCCCAAGTACAGCCATTCTTGGGA  807
      ||||| |||||||||||||||||||||||| |||||||||||||| ||||
seq2  TGCTTGTTGTTACTGTAGCTTCTAGGCCCC-AGTACAGCCATTCTGGGGA  896

seq1  TTTCTGTTAACGCCGAAGTGACTTAGGAATTGCCTTGCTCATCTGGTGTC  857
      |||||||||   |||||  ||| || ||||||||||||| ||||||||||
seq2  TTTCTGTTAGTACCGAAACGAC-TATGAATTGCCTTGCTTATCTGGTGTC  945

seq1  TTACACGTCACAGAGAATCCAAGTGACGTGAAAAAGGAAAGGAAAGGAAA  907
      |||| | |||||||| || |||||||| ||||||  |||||| || ||||
seq2  TTAC-CATCACAGAG-ATTCAAGTGAC-TGAAAA--GAAAGG-AATGAAA  989

seq1  CAGAATGGGATCAGTTTCTGGATGAGCGTGAGCCACTAGAGCCTCAGAGC  957
      |||||| ||||||| ||||||||||||||||| || | ||| ||||||  
seq2  CAGAATTGGATCAG-TTCTGGATGAGCGTGAG-CAATTGAG-CTCAGA-T  1035

seq1  CACTCACAAGCTAGCTAACACCGAAAACACCTCCTCAACAGAGGCTCCCA  1007
      ||||  |||||||||||  |||||||   ||||||| ||||||| ||| |
seq2  CACT--CAAGCTAGCTA--ACCGAAA--CCCTCCTC-ACAGAGGTTCCGA  1078

seq1  GAAAGTGTAAGGGAAGAGACTCCGCACTACACCTGGCTCAATTAAGTGTG  1057
           ||| | ||||||  | || || ||   ||||||||  ||||||||
seq2  -----TGTTATGGAAGACTCGCCCCA-TA---CTGGCTCA--TAAGTGTG  1117

seq1  T  1058
      |
seq2  T  1118


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