BAC Information

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BAC

Clone NameB6Ng01-108I12
Chromosome5 (Build37)
Map Location 14,438,554 - 14,578,040
singlet/doubletdoublet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108I12.bB6Ng01-108I12.g
ACCDH915694DH915695
length1,1211,089
definitionDH915694|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I12, 5' end.DH915695|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,438,554 - 14,439,681)(14,576,940 - 14,578,040)
sequence
gaattcctgggggagttgaggtctaggataaaggatgggatgacgaggaa
aatctgtgtggcccattggagataggggcaggaagtgaaggtaggctgag
actaagggattggaattggaggaaatgaggtggacgtgaggatcttctat
tagcctatctggcaagagttggtattcttacttcttatttattttacttt
ttttttttttaaggaatggaagttgttcagatgcgtaggtatttccatta
caaagtttttaaacattttatatacactattaagaattataaagccatta
ttctggacaaagtaattgagaatgtaaaccaaatgctaaatagttatcta
tccctgaaaatgcagctctcagcagtagtgcacccaaccgtttaaaaact
gaatgtgttgtgctcaattgatgagaaccattttctactatcatccataa
taaaatgaggaacactcacacaaagaaaataggcagtctagggtgaagag
agatataaaaattatatcttaattatcaatgcttaaatgattttcattaa
gtttagtttgtgtcaatcaaatttcttattatagttattatgacaggaaa
gttgtttgggtacattatatattagagtgtatggtcactgtactgagaca
gtagaagacagtgtgacaactggattttaaaaataattctcacaaggctg
acattttcctgaaaatattttacttaaaatagtaattatcagtactgata
tttggtcaaatgagatcatattaatttttttacaactataggtctatgaa
atgaggttttatatatcagtttttcagtattgcttattgagaacagaact
gataaatttcagttgatccgagtaaaacatcttaaggactttgatattat
gtaccacttttcaaatatttatttttgctattttgaattacatgcattca
tttatgtggtaggaaaatacatgtttgggagctgaagggatagctcagta
gtttagtcactagtgtttacatacacgaccagcttcacacacagcactcc
catggtggatcatactatttctcctgttctagagatcacacctcttctgg
ccttccatggatattcaggca
gaattccgcaggtgttcctaattgtctgggctgcaattaggttgattatg
tgattactaagtttggggaggtgaggtctggtttggaagcagtgttttct
gataggtaaaaacacaagtctgtgtgctttgaatccaaccagaataagag
ttattaaagttgaaattctaaagttaaaaaaaaaaaaaaaaacacttttc
ctagctgaatagatggaacttgcctaccttgtacaaggctctggactgga
tttggacctctagaattgaagaaaaaaatgtactcatcaaaaattcagat
gccaactgaaatgtgctagtatgtacagaactcatgaagatgatacgggt
atgcattttaaaaccttaatcattgttatgtatatgtagagagcaacaga
tgatagattagacagataaatagaagatagatatatagatagattagata
gatagaagatagatagatagatagatagatagagaaagagagacagacag
atagatagacagcatagatgattgacagacagaaagacacagatacaaaa
gacacagatatattcttttggaaaattaaaatgaaaacaaaagcaaatga
gccttcaatatttcccgatgaagcaattgaggcctgtggtagctaagtat
cacaccattgttacacagctattaaaactttgtgggtttcaaaaatcagg
cagttttccattacagcctacactcttatctgactccttttgaatcgcct
cgttgtcacgtgtccctatttcttctttgcagcatgtctgtgttaggaca
tagagcagggaggactgattttcttcccttttgagtttctccttcatcct
ggtcactatttccttcctgggaatcatctagaagggtggataacagactt
ctcttgtctgggtattttagtagactgaaacaattcttccagcttgctct
tattgtggatcttctcacttctaaccacagcattgcacaggtcagtacat
ttcgctgctgacaaaacctctcaggtttcatttctaggtttctctcatgt
gctgctcacgcagaagaattactgatgctatctttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14438554_14439681
seq2: B6Ng01-108I12.b_46_1166

seq1  GAATTCCTGGGGGAGTTGAGGTCTAGGATAAAGGATGGGATGACGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGGAGTTGAGGTCTAGGATAAAGGATGGGATGACGAGGAA  50

seq1  AATCTGTGTGGCCCATTGGAGATAGGGGCAGGAAGTGAAGGTAGGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGTGGCCCATTGGAGATAGGGGCAGGAAGTGAAGGTAGGCTGAG  100

seq1  ACTAAGGGATTGGAATTGGAGGAAATGAGGTGGACGTGAGGATCTTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGGATTGGAATTGGAGGAAATGAGGTGGACGTGAGGATCTTCTAT  150

seq1  TAGCCTATCTGGCAAGAGTTGGTATTCTTACTTCTTATTTATTTTACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTATCTGGCAAGAGTTGGTATTCTTACTTCTTATTTATTTTACTTT  200

seq1  TTTTTTTTTTAAGGAATGGAAGTTGTTCAGATGCGTAGGTATTTCCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAGGAATGGAAGTTGTTCAGATGCGTAGGTATTTCCATTA  250

seq1  CAAAGTTTTTAAACATTTTATATACACTATTAAGAATTATAAAGCCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTTTAAACATTTTATATACACTATTAAGAATTATAAAGCCATTA  300

seq1  TTCTGGACAAAGTAATTGAGAATGTAAACCAAATGCTAAATAGTTATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGACAAAGTAATTGAGAATGTAAACCAAATGCTAAATAGTTATCTA  350

seq1  TCCCTGAAAATGCAGCTCTCAGCAGTAGTGCACCCAACCGTTTAAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAAAATGCAGCTCTCAGCAGTAGTGCACCCAACCGTTTAAAAACT  400

seq1  GAATGTGTTGTGCTCAATTGATGAGAACCATTTTCTACTATCATCCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTTGTGCTCAATTGATGAGAACCATTTTCTACTATCATCCATAA  450

seq1  TAAAATGAGGAACACTCACACAAAGAAAATAGGCAGTCTAGGGTGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAGGAACACTCACACAAAGAAAATAGGCAGTCTAGGGTGAAGAG  500

seq1  AGATATAAAAATTATATCTTAATTATCAATGCTTAAATGATTTTCATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAAAAATTATATCTTAATTATCAATGCTTAAATGATTTTCATTAA  550

seq1  GTTTAGTTTGTGTCAATCAAATTTCTTATTATAGTTATTATGACAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTTGTGTCAATCAAATTTCTTATTATAGTTATTATGACAGGAAA  600

seq1  GTTGTTTGGGTACATTATATATTAGAGTGTATGGTCACTGTACTGAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGGGTACATTATATATTAGAGTGTATGGTCACTGTACTGAGACA  650

seq1  GTAGAAGACAGTGTGACAACTGGATTTTAAAAATAATTCTCACAAGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGACAGTGTGACAACTGGATTTTAAAAATAATTCTCACAAGGCTG  700

seq1  ACATTTTCCTGAAAATATTTTACTTAAAATAGTAATTATCAGGTACTGAT  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACATTTTCCTGAAAATATTTTACTTAAAATAGTAATTATCA-GTACTGAT  749

seq1  ATTTGGTCAAATGAGATCATATTAATTTTTTTACAACTATAGGTCTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCAAATGAGATCATATTAATTTTTTTACAACTATAGGTCTATGA  799

seq1  AATGAGGTTTTATATATCAGTTTTTCAGTATTGCTTATTGAGAACAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTTTTATATATCAGTTTTTCAGTATTGCTTATTGAGAACAGAAC  849

seq1  TGATAAATTTCAGTTGATCCGAGTAAAACATCTTAAGGACTTTGATATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATTTCAGTTGATCCGAGTAAAACATCTTAAGGACTTTGATATTA  899

seq1  TGTACCACTTTTCAAATATTTATTTTTGCTATTTTGAATTACATGCATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACTTTTCAAATATTTATTTTTGCTATTTTGAATTACATGCATTC  949

seq1  ATTTATGTGGTAGGAAAATACATGTTTGGGAGCTGAAGGGATAGCTCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTGGTAGGAAAATACATGTTTGGGAGCTGAAGGGATAGCTCAGT  999

seq1  AGTTTAGTACACTAGTTGTTTACATACACGACCCAGCTTCAACACACAGC  1050
      |||||||| |||||| ||||||||||||||| |||||||| |||||||||
seq2  AGTTTAGT-CACTAG-TGTTTACATACACGA-CCAGCTTC-ACACACAGC  1045

seq1  ACTCACATGGTGGATCATAACTATATCTCCTGTTCTAGAGATCCAACACC  1100
      |||| ||||||||||||| ||||| ||||||||||||||||||  |||||
seq2  ACTCCCATGGTGGATCAT-ACTATTTCTCCTGTTCTAGAGATC--ACACC  1092

seq1  TTCTTCTGG-CTTCCATGGATA-TCAGGCA  1128
       |||||||| |||||||||||| |||||||
seq2  -TCTTCTGGCCTTCCATGGATATTCAGGCA  1121

seq1: chr5_14576940_14578040
seq2: B6Ng01-108I12.g_66_1154 (reverse)

seq1  AAAGAAAGGTAGCATCAGTATATTGTCTCTGCGTGAGGCAGCATCAATGA  50
      |||||||| ||||||||||| ||| | ||||||||| ||||||   ||||
seq2  AAAGAAAGATAGCATCAGTA-ATTCT-TCTGCGTGA-GCAGCA--CATGA  45

seq1  AGAAGAAACTTAGAAATGAAAACCTGAGAGGTATTTGTCAGGCAGCAGAA  100
         |||||| |||||||| ||||||||||||| ||||||| |||||  ||
seq2  --GAGAAACCTAGAAATG-AAACCTGAGAGGT-TTTGTCA-GCAGCGAAA  90

seq1  TGTACTGACCTGTGCAATGCTGTGGTTAGAAGTGGAGAAGGATCCACAAT  150
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  TGTACTGACCTGTGCAATGCTGTGGTTAGAAGT-GAGAA-GATCCACAAT  138

seq1  AAGGAGCAAGCTGGAAGAATGTTTTCAGTCTACTAAAATTAACCCAGAC-  199
      || |||||||||||||||||  |||||||||||||||||  |||||||| 
seq2  AA-GAGCAAGCTGGAAGAATTGTTTCAGTCTACTAAAAT--ACCCAGACA  185

seq1  AGAGAAGTCTGTTAT-CACCCTTCTAGATGATT-CCAGGAAGGAAATAGT  247
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  AGAGAAGTCTGTTATCCACCCTTCTAGATGATTCCCAGGAAGGAAATAGT  235

seq1  GACCAGGATGAAGGAGAAACTCAAAAGGGAAGAAAATCAGTCCTCCCTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGATGAAGGAGAAACTCAAAAGGGAAGAAAATCAGTCCTCCCTGC  285

seq1  TCTATGTCCTAACACAGACATGCTGCAAAGAAGAAAATAGGGACACGTGA  347
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTATGTCCTAACACAGACATGCTGCAAAGAAG-AAATAGGGACACGTGA  334

seq1  CAACGAGGCGATTC-AAAGGAGTCAGATAAGAGTGTAGGCTGTAATGGAA  396
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAACGAGGCGATTCAAAAGGAGTCAGATAAGAGTGTAGGCTGTAATGGAA  384

seq1  AACTGCCTGATTTTTGAAACCCACAAAGTTTTAATAGCTGTGTAACAATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCTGATTTTTGAAACCCACAAAGTTTTAATAGCTGTGTAACAATG  434

seq1  GTGTGATACTTAGCTACCACAGGCCTCAATTGCTTCATCGGGAAATATTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATACTTAGCTACCACAGGCCTCAATTGCTTCATCGGGAAATATTG  484

seq1  AAGGCTCATTTGCTTTTGTTTTCATTTTAATTTTCCAAAAGAATATATCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCATTTGCTTTTGTTTTCATTTTAATTTTCCAAAAGAATATATCT  534

seq1  GTGTCTTTTGTATCTGTGTCTTTCTGTCTGTCAATCATCTATGCTGTCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTTGTATCTGTGTCTTTCTGTCTGTCAATCATCTATGCTGTCTA  584

seq1  TCTATCTGTCTGTCTCTCTTTCTCTATCTATCTATCTATCTATCTATCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGTCTGTCTCTCTTTCTCTATCTATCTATCTATCTATCTATCTT  634

seq1  CTATCTATCTAATCTATCTATATATCTATCTTCTATTTATCTGTCTAATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTAATCTATCTATATATCTATCTTCTATTTATCTGTCTAATC  684

seq1  TATCATCTGTTGCTCTCTACATATACATAACAATGATTAAGGTTTTAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTGTTGCTCTCTACATATACATAACAATGATTAAGGTTTTAAAA  734

seq1  TGCATACCCGTATCATCTTCATGAGTTCTGTACATACTAGCACATTTCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACCCGTATCATCTTCATGAGTTCTGTACATACTAGCACATTTCAG  784

seq1  TTGGCATCTGAATTTTTGATGAGTACATTTTTTTCTTCAATTCTAGAGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCTGAATTTTTGATGAGTACATTTTTTTCTTCAATTCTAGAGGT  834

seq1  CCAAATCCAGTCCAGAGCCTTGTACAAGGTAGGCAAGTTCCATCTATTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCAGTCCAGAGCCTTGTACAAGGTAGGCAAGTTCCATCTATTCA  884

seq1  GCTAGGAAAAGTGTTTTTTTTTTTTTTTTTAACTTTAGAATTTCAACTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAAAGTGTTTTTTTTTTTTTTTTTAACTTTAGAATTTCAACTTT  934

seq1  AATAACTCTTATTCTGGTTGGATTCAAAGCACACAGACTTGTGTTTTTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCTTATTCTGGTTGGATTCAAAGCACACAGACTTGTGTTTTTAC  984

seq1  CTATCAGAAAACACTGCTTCCAAACCAGACCTCACCTCCCCAAACTTAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGAAAACACTGCTTCCAAACCAGACCTCACCTCCCCAAACTTAGT  1034

seq1  AATCACATAATCAACCTAATTGCAGCCCAGACAATTAGGAACACCTGCGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATAATCAACCTAATTGCAGCCCAGACAATTAGGAACACCTGCGG  1084

seq1  AATTC  1101
      |||||
seq2  AATTC  1089