BAC Information

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BAC

Clone NameB6Ng01-108O10
Chromosome5 (Build37)
Map Location 95,444,192 - 95,584,217
singlet/doubletdoublet
Overlap geneLOC622894, EG666121, LOC666125, EG666133, LOC100041296
Upstream geneBC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469
Downstream geneLOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108O10.bB6Ng01-108O10.g
ACCDH915963DH915964
length1,1081,006
definitionDH915963|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O10, 5' end.DH915964|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,583,096 - 95,584,217)(95,444,192 - 95,445,188)
sequence
gaattcaatggcagggaggaaaggaggtaacatttgaaatgtaaataaag
aaaatgtcaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagagcaaacgaacatggttcccttctttagatgacattattgttgtt
taagtagaataaagtatctaaattgaaggattctgcaacaaatgccctct
gggatgagttaaaatgaacacatggatgccagacgtgtcaggattcaaaa
tcttgagtaggtggataaagttatcagctaaggtagttcacatatggata
tctaggttggccttttgccacatcacctccagtaaagatctgtgtgacaa
tttccacagactaaggcatttgacttcaaaagggggaggcctcctggaac
cagttgtgaaattcctcacaggagaaaaattaatgagccatagttctcgt
atcagttttatgttttctatttcttttcctatatacaagatgttcctaat
agcccaggccaagatcttaagtattttttttaagatttttttttatttat
tattatagtaagtacactgtagctatcttcagacacaccagaagagggag
tcagatcttgttacagatggttgtgagccaccatgtggttgctgggattt
gaactctggaactttggaagagcagtcaggtgctcttacccactgagcca
tctcaccagcccaagatcttaagtattatggttacaaaaccatctcttga
aatggaatcactaaacatgacctcatctcttggaaaaccaggacttcact
ttataaatcacgtataagatagtagtgataaatataaacttttcccaaca
ataatattatatgtgtctgcatgtgtgtcatcagaagtaggttttggaat
cttgtttaagaaagtcttaaatagaattaaacagtttaatgttttgagaa
ttacagagaacaggaactagaggtaaatagtatctgatcataaaactcat
tagcttgttcttgggaattgcagtatccctagatgattttgtatttgatg
taaaatgattattgacatgatatgaattatgaaatgatagtctgttctat
ttgctgct
gaattccatgccaaggatagaacacagtaggaatggtttcagcataatgc
taggagtgctgcccaggtgactttcatcttctgtttcatgctcttcagag
tagaaggatggagagcctggcaggtgttgtaattgtttgtttctttgctt
gtgatttctgtctagttgagtgtttctctggtgttggctgaggctgagat
cctgctgccaagccctgttccctctaccacctatgcaggtgtagcagctg
cttcacagttgtgcccttagtatttagcatttacatcttcctagcccaca
caattcctttgcattgctaaccctgagcctccacagtaggaactgggaat
gaacacttgtgagcctcagagcaaaacctgctttctgccccaatccaaga
acagccatttttttccttgcttggcagttgtactcaaaaaggcacaggcc
agaaactgaagacttgaatccaaaggaactgttgagcttggctgataaat
ttttatgttgagatctttactcaattgacttgagagtattggaggatgat
aaatacgaagcaacttgctttcttaaacatgcagatatcctgttagacag
gcaccatttgatagggatgatttcttttttccaatgtctcttttgaattc
tctattaaaaatctagtgtccaggtcttcagtttcatttctttgatcaac
ctattttcctgccaacacaatgcagttttcactatactatggctatgtag
tataacttcagatcagaaatggtgatacttctagaacatcatatattata
gaggattatggtcttcaggctcagttcaaggttgcctgtgagtgtctgta
attatcttagacaggtgatagcagatcctctcagaggacggccatacctg
gatcctttatgtaagtagatcttgtcattagcataatgtagggtttgatg
tctcctaatgagattgatcccaaatccctgtgtctggatggccttcctca
gttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95583096_95584217
seq2: B6Ng01-108O10.b_48_1155 (reverse)

seq1  AGCAGCAAAATAGAACAGACATAATCATTTACAATAATCATAATCATGTA  50
      |||||| |||||||||||||   ||||||| ||  | |||| ||||||| 
seq2  AGCAGC-AAATAGAACAGAC--TATCATTT-CATAATTCAT-ATCATGT-  44

seq1  CAATAATCATTTTATACATCAAAATACAAAATCATCTAGGGATACTGGCA  100
      ||||||||||||  |||||| ||||||||||||||||||||||||||   
seq2  CAATAATCATTT--TACATC-AAATACAAAATCATCTAGGGATACTG--C  89

seq1  AATTCCCAAGAACAAGCTAATGAGTTTTTATGATCAGGTACTATTTAACC  150
      |||||||||||||||||||||||| |||||||||||| |||||||| |||
seq2  AATTCCCAAGAACAAGCTAATGAG-TTTTATGATCAGATACTATTT-ACC  137

seq1  TCTAGTTCCTGTTCTTCTGTAATTCTTCAAAACA-TAAACTGTTTTAATT  199
      |||||||||||||| |||||||||| |||||||| ||||||| |||||||
seq2  TCTAGTTCCTGTTC-TCTGTAATTC-TCAAAACATTAAACTG-TTTAATT  184

seq1  CTATTTAAGACTTTCTTAAACAAGATTCCAAAACCTACTTCTGATGACAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAAGACTTTCTTAAACAAGATTCCAAAACCTACTTCTGATGACAC  234

seq1  ACATGCAGACACATATAATATTATTGTTGGG-AAAGTTTATATTTATCAC  298
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACATGCAGACACATATAATATTATTGTTGGGAAAAGTTTATATTTATCAC  284

seq1  TACTATCTTATACGTGATTTATAAAGTGAAGTCCTGGTTTTCCAAGAGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTTATACGTGATTTATAAAGTGAAGTCCTGGTTTTCCAAGAGAT  334

seq1  GAGGTCATGTTTAGTGATTCCATTTCAAGAGATGGTTTTGTAACCATAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATGTTTAGTGATTCCATTTCAAGAGATGGTTTTGTAACCATAAT  384

seq1  ACTTAAGATCTTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGATCTTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGAC  434

seq1  TGCTCTTCCAAAGTTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCAAAGTTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTC  484

seq1  ACAACCATCTGTAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCTGTAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGAT  534

seq1  AGCTACAGTGTACTTACTATAATAATAAATAAAAAAAAATCTTAAAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGTGTACTTACTATAATAATAAATAAAAAAAAATCTTAAAAAAA  584

seq1  ATACTTAAGATCTTGGCCTGGGCTATTAGGAACATCTTGTATATAGGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAGATCTTGGCCTGGGCTATTAGGAACATCTTGTATATAGGAAA  634

seq1  AGAAATAGAAAACATAAAACTGATACGAGAACTATGGCTCATTAATTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGAAAACATAAAACTGATACGAGAACTATGGCTCATTAATTTTT  684

seq1  CTCCTGTGAGGAATTTCACAACTGGTTCCAGGAGGCCTCCCCCTTTTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGAGGAATTTCACAACTGGTTCCAGGAGGCCTCCCCCTTTTGAA  734

seq1  GTCAAATGCCTTAGTCTGTGGAAATTGTCACACAGATCTTTACTGGAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGCCTTAGTCTGTGGAAATTGTCACACAGATCTTTACTGGAGGT  784

seq1  GATGTGGCAAAAGGCCAACCTAGATATCCATATGTGAACTACCTTAGCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGCAAAAGGCCAACCTAGATATCCATATGTGAACTACCTTAGCTG  834

seq1  ATAACTTTATCCACCTACTCAAGATTTTGAATCCTGACACGTCTGGCATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTATCCACCTACTCAAGATTTTGAATCCTGACACGTCTGGCATC  884

seq1  CATGTGTTCATTTTAACTCATCCCAGAGGGCATTTGTTGCAGAATCCTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCATTTTAACTCATCCCAGAGGGCATTTGTTGCAGAATCCTTC  934

seq1  AATTTAGATACTTTATTCTACTTAAACAACAATAATGTCATCTAAAGAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGATACTTTATTCTACTTAAACAACAATAATGTCATCTAAAGAAG  984

seq1  GGAACCATGTTCGTTTGCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCATGTTCGTTTGCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  1034

seq1  TCTTTCTTTCTTTCTTGACATTTTCTTTATTTACATTTCAAATGTTACCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTGACATTTTCTTTATTTACATTTCAAATGTTACCT  1084

seq1  CCTTTCCTCCCTGCCATTGAATTC  1122
      ||||||||||||||||||||||||
seq2  CCTTTCCTCCCTGCCATTGAATTC  1108

seq1: chr5_95444192_95445188
seq2: B6Ng01-108O10.g_69_1061

seq1  GAATTCCATGCCAAGGATAGAACACAGTAGGAATGGTTTCAGCATAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCAAGGATAGAACACAGTAGGAATGGTTTCAGCATAATGC  50

seq1  TAGGAGTGCTGCCCAGGTGACTTTCATCTTCTGTTTCATGCTCTTCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGCTGCCCAGGTGACTTTCATCTTCTGTTTCATGCTCTTCAGAG  100

seq1  TAGAAGGATGGAGAGCCTGGCAGGTGTTGTAATTGTTTGTTTCTTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGATGGAGAGCCTGGCAGGTGTTGTAATTGTTTGTTTCTTTGCTT  150

seq1  GTGATTTCTGTCTAGTTGAGTGTTTCTCTGGTGTTGGCTGAGGCTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTCTGTCTAGTTGAGTGTTTCTCTGGTGTTGGCTGAGGCTGAGAT  200

seq1  CCTGCTGCCAAGCCCTGTTCCCTCTACCACCTATGCAGGTGTAGCAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCCAAGCCCTGTTCCCTCTACCACCTATGCAGGTGTAGCAGCTG  250

seq1  CTTCACAGTTGTGCCCTTAGTATTTAGCATTTACATCTTCCTAGCCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGTTGTGCCCTTAGTATTTAGCATTTACATCTTCCTAGCCCACA  300

seq1  CAATTCCTTTGCATTGCTAACCCTGAGCCTCCACAGTAGGAACTGGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCTTTGCATTGCTAACCCTGAGCCTCCACAGTAGGAACTGGGAAT  350

seq1  GAACACTTGTGAGCCTCAGAGCAAAACCTGCTTTCTGCCCCAATCCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTGTGAGCCTCAGAGCAAAACCTGCTTTCTGCCCCAATCCAAGA  400

seq1  ACAGCCATTTTTTTCCTTGCTTGGCAGTTGTACTCAAAAAGGCACAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATTTTTTTCCTTGCTTGGCAGTTGTACTCAAAAAGGCACAGGCC  450

seq1  AGAAACTGAAGACTTGAATCCAAAGGAACTGTTGAGCTTGGCTGATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGAAGACTTGAATCCAAAGGAACTGTTGAGCTTGGCTGATAAAT  500

seq1  TTTTATGTTGAGATCTTTACTCAATTGACTTGAGAGTATTGGAGGATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTGAGATCTTTACTCAATTGACTTGAGAGTATTGGAGGATGAT  550

seq1  AAATACGAAGCAACTTGCTTTCTTAAACATGCAGATATCCTGTTAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACGAAGCAACTTGCTTTCTTAAACATGCAGATATCCTGTTAGACAG  600

seq1  GCACCATTTGATAGGGATGATTTCTTTTTTCCAATGTCTCTTTTGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATTTGATAGGGATGATTTCTTTTTTCCAATGTCTCTTTTGAATTC  650

seq1  TCTATTAAAAATCTAGTGTCCAGGTCTTCAGTTTCATTTCTTTGATCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAAAATCTAGTGTCCAGGTCTTCAGTTTCATTTCTTTGATCAAC  700

seq1  CTATTTTCCTGCCAACACAATGCAGTTTTCACTATACTATGGCTATGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCCTGCCAACACAATGCAGTTTTCACTATACTATGGCTATGTAG  750

seq1  TATAACTTCAGATCAGAAATGGTGATACTTCTAGAACATCATATATTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTCAGATCAGAAATGGTGATACTTCTAGAACATCATATATTATA  800

seq1  GAGGATTATGGTCTTCAGGCTCAGTTCAAAGGTTGCCTGTGAGTGTCTGT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGGATTATGGTCTTCAGGCTCAGTTC-AAGGTTGCCTGTGAGTGTCTGT  849

seq1  AATTATCTTAGACAGGTGATAGCAGATCCTCTCAGAGGACGGCCATACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTTAGACAGGTGATAGCAGATCCTCTCAGAGGACGGCCATACCT  899

seq1  GGATCCTTTATGTAAGTAGATCTTGTCATTAGCAATAATGTAGGGGTTTG  950
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  GGATCCTTTATGTAAGTAGATCTTGTCATTAGC-ATAATGTA-GGGTTTG  947

seq1  ATGTCTCCTAATGAGATTGATCCCAAAATCCCTGTGTCTGGATGGCC  997
      |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGTCTCCTAATGAGATTGATCCC-AAATCCCTGTGTCTGGATGGCC  993