BAC Information

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BAC

Clone NameB6Ng01-109A18
Chromosome5 (Build37)
Map Location 125,291,624 - 125,473,601
singlet/doubletdoublet
Overlap geneDnahc10, Ccdc92, Zfp664
Upstream geneLOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2
Downstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109A18.bB6Ng01-109A18.g
ACCDH916066DH916067
length1,1121,003
definitionDH916066|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A18, 5' end.DH916067|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,472,495 - 125,473,601)(125,291,624 - 125,292,635)
sequence
gaattcttttgttcaacaatttcctgaattctctggttaactgatttctc
agcacagaagcaaaccagggctctgcagagagcctggctgcggaacccat
cctcgaagggagcgccagactcctggcacacggatggagcaaaagaggaa
ggaacctttgctcggaagccaacggggcagggagccggtcatctagaagt
ttccagtgatctctgctcttggctgggctcaggaagcaaagccggaattt
ccagctaggctttaagaaggaaagtcggggagataagacctgtctctttt
gcaaaccctgctgcttccaggaagctctccgtgacctcctgtcctaccgc
cccttgcccagccattccaccacccaaaatccctcttcaaccctttcaaa
gagcatacggccttcagaaattgtgaggctccccttctgaccctcagcaa
ctggaggggacgggcacatggtaggtgtgtcgaccatcaacagatctttc
aagttcaaagcacctcagaagaaataacagaggccccattgcattctagt
aggctcagtctccgggagtttctctatgggcgaaggtgtatgtttgcttt
tgctttttctttaatttttttttttcgccctataggcagttcaatgaatg
agactcttgtacgaagcccagcatggactaaccagggcagtgggttgtta
caagggagcgattgtggggagtgatggggagcccttgagctctggtgact
gctggcacctgagagtggctactgaacagaccagccccgccttcccacac
tcctgggaattctctctttccctgaccttccttgttaggatggtgggtcc
cgtcacaaccttgagttctgcccgaatactcttagtgctcttgggtcttc
tccactgtgtgtgtctctgtgagtggtgtatcacaaaggccctgtggaag
ccagtcagcatccgctgaatgcaaaggacagagtccaagtggccagtcta
cacaggttgtcattggtaatgccaatccaacccctttgggcgatttagga
gaatagttataaacccttctgcggtctcttcaaagtccttttcagcctca
gttcggtgtgtt
gaattcttgagtttgtgggtcagtatttcactttctggggacttgttctt
tttttttgtttgtttgttttctgcaatgctggggacccgatgccagagcc
tcatatgctaggctggtgcttgccactgagctgcccccccagtcctcctt
ttccctgtttctaaccccccactttctctgtgccttccactgcaggcgat
aactccatgattcccgatgagaaacttgaggagcttgtggagcacgtggt
catggtccaccagtcggtgggcgagttcagcaagcagttccagcagaagc
tgaggcggagcaactatgtgacgcccaagaactacctagacttcattaat
acctactcaaaactactagatgagaaaacccagtacaacataggtgagcg
ggcagaggagtgggcaggatagatcggatgaggaggcagggcatcgttat
ggcatcggctcattttagggttttactgctgtgaacagacaccatgacca
aggcaactcttataaaggacaccatttcattggggttggcttacaggttc
agaagttcaatctattaacaaggtgggagcatggcagcatccaggcaggc
atggtgcaggaggagctgaaagttctacatcttcatctgaagactgctag
gatgcagatgaaggctgcttcttcttaaagcccacacccaccctgacaca
cctattctaacagggccacacctttttaatagtgccactccctgggtcga
gcatatacaaaccatgccaggcatggacacctcaaggcctggcatcctta
tggttggggcaaatagagcagatttgggcttttgcgtttgggggcacgtc
atccctgtgggtgggacactgcatgatttagttccttgtgccttgcatgc
ttgcagagctattttctttgccctggatgtccctgtcccagcgtgctctg
ctagaaagggctcttcatgctactgataagaagaaacactgtacagcgtg
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125472495_125473601
seq2: B6Ng01-109A18.b_46_1156 (reverse)

seq1  ACACAC---ACTGAGGCTGGAAGGAACTAGAAAGAGAACTGCAAGAAGGT  47
      ||||||   |||||||||| || | |||   ||||| || || |||||| 
seq2  ACACACCGAACTGAGGCTGAAAAGGACTTTGAAGAG-ACCGC-AGAAGGG  48

seq1  TTTATAACTATTCTCCTAAATCGCCCAGAGGGGTTGGATTGGCATAACCA  97
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  TTTATAACTATTCTCCTAAATCGCCCAAAGGGGTTGGATTGGCATTACCA  98

seq1  ATGACAACCTGTGTAGACTGGCCAC-TGGGCTCTGTCCTTTGCATTCAGC  146
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  ATGACAACCTGTGTAGACTGGCCACTTGGACTCTGTCCTTTGCATTCAGC  148

seq1  GGATGCTGACTGGCTTCCACAGGGCCTCTGTGATACACCACTCACAGAGA  196
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGATGCTGACTGGCTTCCACAGGGCCTTTGTGATACACCACTCACAGAGA  198

seq1  CACACACAGTGGAGAAGACCCAAGAGCACT-AGAGTATTCGGGCAGAACT  245
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACACACAGTGGAGAAGACCCAAGAGCACTAAGAGTATTCGGGCAGAACT  248

seq1  CAAGGTTGTGACGGGACCCACCATCCTAACAAGGAAGGTCAGGG-AAGAG  294
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAGGTTGTGACGGGACCCACCATCCTAACAAGGAAGGTCAGGGAAAGAG  298

seq1  AGAATTCCCAGGAGTGTGGGAAGGCGGGGCTGGTCTGTTCAGTAGCCACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCCAGGAGTGTGGGAAGGCGGGGCTGGTCTGTTCAGTAGCCACT  348

seq1  CTCAGGTGCCAGCAGTCACCAGAGCTCAAGGGCTCCCCATCACTCCCCAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGCCAGCAGTCACCAGAGCTCAAGGGCTCCCCATCACTCCCCAC  398

seq1  AATCGCTCCCTTGTAACAACCCACTGCCCTGGTTAGTCCATGCTGGGCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCTCCCTTGTAACAACCCACTGCCCTGGTTAGTCCATGCTGGGCTT  448

seq1  CGTACAAGAGTCTCATTCATTGAACTGCCTATAGGGCGAAAAAAAAAAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAAGAGTCTCATTCATTGAACTGCCTATAGGGCGAAAAAAAAAAAT  498

seq1  TAAAGAAAAAGCAAAAGCAAACATACACCTTCGCCCATAGAGAAACTCCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAAGCAAAAGCAAACATACACCTTCGCCCATAGAGAAACTCCC  548

seq1  GGAGACTGAGCCTACTAGAATGCAATGGGGCCTCTGTTATTTCTTCTGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGAGCCTACTAGAATGCAATGGGGCCTCTGTTATTTCTTCTGAG  598

seq1  GTGCTTTGAACTTGAAAGATCTGTTGATGGTCGACACACCTACCATGTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGAACTTGAAAGATCTGTTGATGGTCGACACACCTACCATGTGC  648

seq1  CCGTCCCCTCCAGTTGCTGAGGGTCAGAAGGGGAGCCTCACAATTTCTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCCCTCCAGTTGCTGAGGGTCAGAAGGGGAGCCTCACAATTTCTGA  698

seq1  AGGCCGTATGCTCTTTGAAAGGGTTGAAGAGGGATTTTGGGTGGTGGAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTATGCTCTTTGAAAGGGTTGAAGAGGGATTTTGGGTGGTGGAAT  748

seq1  GGCTGGGCAAGGGGCGGTAGGACAGGAGGTCACGGAGAGCTTCCTGGAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCAAGGGGCGGTAGGACAGGAGGTCACGGAGAGCTTCCTGGAAG  798

seq1  CAGCAGGGTTTGCAAAAGAGACAGGTCTTATCTCCCCGACTTTCCTTCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGTTTGCAAAAGAGACAGGTCTTATCTCCCCGACTTTCCTTCTT  848

seq1  AAAGCCTAGCTGGAAATTCCGGCTTTGCTTCCTGAGCCCAGCCAAGAGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTAGCTGGAAATTCCGGCTTTGCTTCCTGAGCCCAGCCAAGAGCA  898

seq1  GAGATCACTGGAAACTTCTAGATGACCGGCTCCCTGCCCCGTTGGCTTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCACTGGAAACTTCTAGATGACCGGCTCCCTGCCCCGTTGGCTTCC  948

seq1  GAGCAAAGGTTCCTTCCTCTTTTGCTCCATCCGTGTGCCAGGAGTCTGGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGGTTCCTTCCTCTTTTGCTCCATCCGTGTGCCAGGAGTCTGGC  998

seq1  GCTCCCTTCGAGGATGGGTTCCGCAGCCAGGCTCTCTGCAGAGCCCTGGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTCGAGGATGGGTTCCGCAGCCAGGCTCTCTGCAGAGCCCTGGT  1048

seq1  TTGCTTCTGTGCTGAGAAATCAGTTAACCAGAGAATTCAGGAAATTGTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTGTGCTGAGAAATCAGTTAACCAGAGAATTCAGGAAATTGTTG  1098

seq1  AACAAAAGAATTC  1107
      |||||||||||||
seq2  AACAAAAGAATTC  1111

seq1: chr5_125291624_125292635
seq2: B6Ng01-109A18.g_68_1070

seq1  GAATTCTTGAGTTTGTGGGTCAGTATTTCACTTTCTGGGGACTTGTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGTTTGTGGGTCAGTATTTCACTTTCTGGGGACTTGTTCTT  50

seq1  TTTTTTTGTTTGTTTGTTTTCTGCAATGCTGGGGACCCGATGCCAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTGTTTGTTTTCTGCAATGCTGGGGACCCGATGCCAGAGCC  100

seq1  TCATATGCTAGGCTGGTGCTTGCCACTGAGCTGCCCCCCCAGTCCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGCTAGGCTGGTGCTTGCCACTGAGCTGCCCCCCCAGTCCTCCTT  150

seq1  TTCCCTGTTTCTAACCCCCCACTTTCTCTGTGCCTTCCACTGCAGGCGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTTTCTAACCCCCCACTTTCTCTGTGCCTTCCACTGCAGGCGAT  200

seq1  AACTCCATGATTCCCGATGAGAAACTTGAGGAGCTTGTGGAGCACGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATGATTCCCGATGAGAAACTTGAGGAGCTTGTGGAGCACGTGGT  250

seq1  CATGGTCCACCAGTCGGTGGGCGAGTTCAGCAAGCAGTTCCAGCAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCCACCAGTCGGTGGGCGAGTTCAGCAAGCAGTTCCAGCAGAAGC  300

seq1  TGAGGCGGAGCAACTATGTGACGCCCAAGAACTACCTAGACTTCATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCGGAGCAACTATGTGACGCCCAAGAACTACCTAGACTTCATTAAT  350

seq1  ACCTACTCAAAACTACTAGATGAGAAAACCCAGTACAACATAGGTGAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTCAAAACTACTAGATGAGAAAACCCAGTACAACATAGGTGAGCG  400

seq1  GGCAGAGGAGTGGGCAGGATAGATCGGATGAGGAGGCAGGGCATCGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGAGTGGGCAGGATAGATCGGATGAGGAGGCAGGGCATCGTTAT  450

seq1  GGCATCGGCTCATTTTAGGGTTTTACTGCTGTGAACAGACACCATGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCGGCTCATTTTAGGGTTTTACTGCTGTGAACAGACACCATGACCA  500

seq1  AGGCAACTCTTATAAAGGACACCATTTCATTGGGGTTGGCTTACAGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTCTTATAAAGGACACCATTTCATTGGGGTTGGCTTACAGGTTC  550

seq1  AGAAGTTCAATCTATTAACAAGGTGGGAGCATGGCAGCATCCAGGCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCAATCTATTAACAAGGTGGGAGCATGGCAGCATCCAGGCAGGC  600

seq1  ATGGTGCAGGAGGAGCTGAAAGTTCTACATCTTCATCTGAAGACTGCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCAGGAGGAGCTGAAAGTTCTACATCTTCATCTGAAGACTGCTAG  650

seq1  GATGCAGATGAAGGCTGCTTCTTCTTAAAGCCCACACCCACCCTGACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGATGAAGGCTGCTTCTTCTTAAAGCCCACACCCACCCTGACACA  700

seq1  CCTATTCTAACAGGGCCACACCTTTTTAATAGTGCCACTCCCTGGGTCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCTAACAGGGCCACACCTTTTTAATAGTGCCACTCCCTGGGTCGA  750

seq1  GCATATACAAACCATGCCAGGCATGGACACCTCAAGGCCTGGCATCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACAAACCATGCCAGGCATGGACACCTCAAGGCCTGGCATCCTTA  800

seq1  TGGTTGGGGCAAAATAGAGCAGATTT-GGCTTTTGCGTTTGGGGGCACGT  849
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TGGTTGGGGC-AAATAGAGCAGATTTGGGCTTTTGCGTTTGGGGGCACGT  849

seq1  CATCCCTGTGGGTGGGACACTGCATGATTTTAGTTCCTTGTGGCCTTGCA  899
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  CATCCCTGTGGGTGGGACACTGCATGA-TTTAGTTCCTTGT-GCCTTGCA  897

seq1  TGCTTGCAGAGCTATTTTCTTTGCCCTGGATGTCCCCTGGTCCCCAGCGT  949
      ||||||||||||||||||||||||||||||||| |||||   ||||||||
seq2  TGCTTGCAGAGCTATTTTCTTTGCCCTGGATGT-CCCTG--TCCCAGCGT  944

seq1  GCTCTGCTAGAAAAGGGCTCTCCATGGCTACTGGATAAG-AGATACACTG  998
      |||||||||| |||||||||| ||| |||||| |||||| ||| ||||||
seq2  GCTCTGCTAG-AAAGGGCTCTTCAT-GCTACT-GATAAGAAGAAACACTG  991

seq1  TTACCAGCGTGGGG  1012
      |   ||||||||||
seq2  T--ACAGCGTGGGG  1003