BAC Information

Click to search

BAC

Clone NameB6Ng01-109B10
Chromosome5 (Build37)
Map Location 14,960,884 - 14,996,193
singlet/doubletdoublet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109B10.bB6Ng01-109B10.g
ACCDH916094DH916095
length1,176889
definitionDH916094|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B10, 5' end.DH916095|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,995,001 - 14,996,193)(14,960,884 - 14,961,774)
sequence
gaattcaccaggaaagaacaagagcccaaaaggcagaggagaagtgttca
tgggtgcactagccagttacctctggaagagcagctgcatggattcagga
tgcacttcatgcacactgggtgccatgctggatggctgtggaaagtcatc
tcttactaagtcctaatcaaaatgcttctagagaactccacactgagtca
gggcattctgttcccaagcaaaccacagcactgatctccatctgtttttc
tttgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcat
cttaattgccttgccaaaggattggaaaggagcaccactttttgttcaga
agacaacttcagaaaacaaaagagaagcctcaaatgggccaaaagccaca
aattgaaaaacaaaagaaaaacaaggctggctgtctactgccagcaggag
ttcaccagggagaggagctctgactccaaaatagtcacttttccattttg
tcaatgatggcgaaaggccatgggtgctggctaaaggaaggaaaggatgt
tctaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgt
atccaatgctgataactggcagcagaaactctgggagggtcacatctatg
tggtgacacaggaagctttctccagggtctagcacactcttaccaaagcc
tcttgtccaggttcgctatctcatctaaatgctcactcgcattaagggac
aacatggtgtaattggaaatggacagacacatttacttataattttggcc
ataactggacaaggagaaagtctcagctacattccaccaggcccatagca
ctctcagaccaaatagaaggatgaaagataggaaaatacacacttcagtg
tcagctgtgggcccagtttccaggagatgggagatggtcattttcctcca
gtgccagagatgatgccctttgggtgggccattttcactcacagtttggt
agtccctgcaggagtcttgcttctatggcctttacagtaagtgtgacatc
atttaagaaaaaaaacattcaaacaagcagagtgatccccgttttaattt
acaaggataaaaaaagaaaaatatactagtcagttaaagaatctagtggt
tcattaccttgaatgggtaaggcttt
gaattcacatggaattagatttttcaaatttttcattttattaaaaaaga
gagaatcattgtctacaaattcttttatgtccaactatgcaaatacaact
tcaagtactctggaaattctatgatggtgctaacaatttcaggaatttcc
aacaggacgcataacaagaaaaatccatatagtacaagtcttaggtgtta
gctgaattttcaaatcagaaagcaaagagaagaatttacattttcagtaa
ctttaggatctgtgagtgttgttaatttaaataccgttatgaggagtcca
tgtacagcaggatattaggccatacaattgaataggaagatacagaagct
atatagtacttcaagtgttgctatcatatatgtctaattgatattttaca
gattaatgccaagtaaaatcaaaatatagtctcctacccattacatctta
aaacacaatgatctatcaacagttgccatttcacagcaaaaggaaagcag
taggtataaattgaacacagaactgcttctcttctaagaaatgaacacag
atatatagatacatgtatacttatacattctctttgaaattcaaggtgat
taatttgctttactaccatataaaaacaatctggctgtggtcagggaaaa
aagctcattttccacatttaaaaagtacgttggccggatgtggtggcaca
cgcatttaatcccagctctggggaggcagaggcaggcagatttctgagtt
ggaggccagcctggtctacaaagtgagttccaggacagccagggctatac
agagaaaccctgtctagaaaaaacaaaaaaagtacacattgtctctggca
ggaatcacatccatagacacttagacctatgttgatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14995001_14996193
seq2: B6Ng01-109B10.b_46_1220 (reverse)

seq1  AAAGCCTTACCCAACTCAAAAGTGTAAAATGAAACCAACTAAGATCTTTA  50
      |||||||||||||  |  || ||    ||||||  | ||| ||||  || 
seq2  AAAGCCTTACCCA--TTCAAGGT----AATGAA--CCACT-AGATTCTTT  41

seq1  AACTGAACTAGCTATAATTATCTGTTTTTATCCTTGCTAAATAAACAAAG  100
      ||||| ||||| |||| || ||| |||||||||||| ||||| || || |
seq2  AACTG-ACTAG-TATATTTTTCTTTTTTTATCCTTG-TAAATTAA-AACG  87

seq1  GGGATCACTCTGCTTTGTTTGAATG-TTTTTTTCTTAAATGTTGTCACGC  149
      ||||||||||||| ||||||||||| ||||||||||||||| |||||| |
seq2  GGGATCACTCTGC-TTGTTTGAATGTTTTTTTTCTTAAATGATGTCACAC  136

seq1  TTAACTGTAAAGGGGCCATAAGAAGCAAGACTCCCTGCAGGAACTACCAA  199
      || ||||||||  |||||| |||||||||||| |||||||| ||||||||
seq2  TT-ACTGTAAA--GGCCAT-AGAAGCAAGACT-CCTGCAGGGACTACCAA  181

seq1  ACTGTGAGTGAAAATGGCCCACCCAAAGGGCATCATCTCTGGCACTGGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGTGAAAATGGCCCACCCAAAGGGCATCATCTCTGGCACTGGAG  231

seq1  GAAAATGACCATCTCCCATCTCCTGGAAACTGGGCCCACAGCTGACACTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGACCATCTCCCATCTCCTGGAAACTGGGCCCACAGCTGACACTG  281

seq1  AAGTGTGTATTTTCCTATCTTTCATCCTTCTATTTGGTCTGAGAGTGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTATTTTCCTATCTTTCATCCTTCTATTTGGTCTGAGAGTGCTA  331

seq1  TGGGCCTGGTGGAATGTAGCTGAGACTTTCTCCTTGTCCAGTTATGGCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGGTGGAATGTAGCTGAGACTTTCTCCTTGTCCAGTTATGGCCA  381

seq1  AAACTATAAGTAAATGTGTCTGTCCATTTCCAATTACAACATGTTGTCCC  449
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAATTATAAGTAAATGTGTCTGTCCATTTCCAATTACACCATGTTGTCCC  431

seq1  TTAATGCGAGTGAGCATTTAGATGAGATAGTGAACCAGGGCAAGAGGCTT  499
      |||||||||||||||||||||||||||||| ||||| || ||||||||||
seq2  TTAATGCGAGTGAGCATTTAGATGAGATAGCGAACCTGGACAAGAGGCTT  481

seq1  TGGTAAGAGTGTGCTAGACCCTGGAGAAAGCTTCTTGTGTCACCACATAG  549
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGTAAGAGTGTGCTAGACCCTGGAGAAAGCTTCCTGTGTCACCACATAG  531

seq1  ATGTGACCCTCCCAGAGTTTCTGCTGCCAGTTATCAGCATTGGATACAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCCTCCCAGAGTTTCTGCTGCCAGTTATCAGCATTGGATACAAG  581

seq1  TGAGAATGCAGTTCTTGCAACAAAGAGACCTGTTTTCTTCCTGGAACATC  649
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAGAATGCAGTTCTTGCAACAAAGAGACCTGTTTTCTTCCTAGAACATC  631

seq1  CTTTCCTTCCTTTAGCCAGCACCCATGGCCTTTTGCCATCATTGACAAAA  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTTCCTTCCTTTAGCCAGCACCCATGGCCTTTCGCCATCATTGACAAAA  681

seq1  TGTTAAAGTGACTATTTTGGAGTCAGAGTTCCTCTCCCTTGTGAACTCCT  749
      ||  |||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TGGAAAAGTGACTATTTTGGAGTCAGAGCTCCTCTCCCTGGTGAACTCCT  731

seq1  GCTGGCAGTAGACAGCCAGCCTTGTTTTTCTTTTGTTTTTCAATTTGTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAGTAGACAGCCAGCCTTGTTTTTCTTTTGTTTTTCAATTTGTGG  781

seq1  CTTTTGGCCCATTTGAGGCTTCTCTTTTGTTTTCTGAAGTTGTCTTCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCCCATTTGAGGCTTCTCTTTTGTTTTCTGAAGTTGTCTTCTGA  831

seq1  ACAAAAAGTGGTGCTCCTTTCCAATCCTTTGGCAAGGCAATTAAGATGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGTGGTGCTCCTTTCCAATCCTTTGGCAAGGCAATTAAGATGAT  881

seq1  TTTGTGCTTTGTTTTTCAATTTGGAAGGATGTTTTAAGAGTCAGAGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGTGCTTTGTTTTTCAATTTGGAAGGATGTTTTAAGAGTCAAAGAAAA  931

seq1  ACAGATGGAGATCAGTGCTGTGGTTTGCTTGGGAACAGAAAGCCCTGACT  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAGATGGAGATCAGTGCTGTGGTTTGCTTGGGAACAGAATGCCCTGACT  981

seq1  CAGTGTGGAGTTCTCTAGAAGCATTTTGATTAGGACTTAGTAAGAGATGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGAGTTCTCTAGAAGCATTTTGATTAGGACTTAGTAAGAGATGA  1031

seq1  CTTTCCACAGCCATCCAGCATGGCACCCAGTGTGCATGAAGTACATCCTG  1099
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTTCCACAGCCATCCAGCATGGCACCCAGTGTGCATGAAGTGCATCCTG  1081

seq1  AATCCATGCAGCTGCTCTTCCAGAGGTAACTGGCTAGTGCACCCATGAAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGCAGCTGCTCTTCCAGAGGTAACTGGCTAGTGCACCCATGAAC  1131

seq1  ACTTCTCCTCTGCCTTTTGGGCTCTTGTTCTTTCCTGGTGAATT  1193
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTCTGCCTTTTGGGCTCTTGTTCTTTCCTGGTGAATT  1175

seq1: chr5_14960884_14961774
seq2: B6Ng01-109B10.g_67_955

seq1  GAATTCACATGGAATTAGATTTTTCAAATTTTTCATTTTATTAAAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGAATTAGATTTTTCAAATTTTTCATTTTATTAAAAAAGA  50

seq1  GAGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACT  100

seq1  TCAAGCACACTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCC  150
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACTCTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCC  150

seq1  AACAGGACGCATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACGCATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTA  200

seq1  GCTGAATTTTCAAATCAAAAAGCAAAGAGAAGAATTTACATTTTCAGTAA  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTGAATTTTCAAATCAGAAAGCAAAGAGAAGAATTTACATTTTCAGTAA  250

seq1  CTTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCA  300

seq1  GGTACATCAGGATATTAGGCCATGCAATCGTATACGGAGATACAGAAGCT  350
       ||||| |||||||||||||||| |||| | ||| | |||||||||||||
seq2  TGTACAGCAGGATATTAGGCCATACAATTGAATAGGAAGATACAGAAGCT  350

seq1  ACATAGTACTTCAAGTGTTGCTATCATATATGTCTAATTGATATTTTACA  400
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTACTTCAAGTGTTGCTATCATATATGTCTAATTGATATTTTACA  400

seq1  GATTAATGCCAAGTAAAATCAAAATATAGTCTCCTACCCATTACATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATGCCAAGTAAAATCAAAATATAGTCTCCTACCCATTACATCTTA  450

seq1  AAACACAATGATCTATCAACAGTTGCCATTTCACAGCAAAAGGAAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATGATCTATCAACAGTTGCCATTTCACAGCAAAAGGAAAGCAG  500

seq1  TAGGTATAAATTGAACACAGAACTGCTTCTCTTCTAAGAAATGAACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATAAATTGAACACAGAACTGCTTCTCTTCTAAGAAATGAACACAG  550

seq1  ATATATAGATACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGATACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGAT  600

seq1  TAATTTGCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGGAAAA  650
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAATTTGCTTTACTACCATATAAAAACAATCTGGCTGTGGTCAGGGAAAA  650

seq1  AAGCTCATTTTCCACATTTAAAAAGTACGTTGGCCGGGTGTGGTGGCACA  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGCTCATTTTCCACATTTAAAAAGTACGTTGGCCGGATGTGGTGGCACA  700

seq1  CGTCTTTAATCCCAGCTCTGGGTAGGCAGAGGCAGGCAGATTTCTGAGTT  750
      ||  |||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGCATTTAATCCCAGCTCTGGGGAGGCAGAGGCAGGCAGATTTCTGAGTT  750

seq1  GGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAC  800

seq1  AGAGAAACCCTGTCTAGAAAAACCAAAAAAAAGTACACATTGTCTCTGGC  850
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTAGAAAAAAC-AAAAAAAGTACACATTGTCTCTGGC  849

seq1  AAGGAATCACATCCATAGACCACTTAGACCTATG-TGATTTG  891
       |||||||||||||||||| |||||||||||||| |||||||
seq2  -AGGAATCACATCCATAGA-CACTTAGACCTATGTTGATTTG  889