BAC Information

Click to search

BAC

Clone NameB6Ng01-109F07
Chromosome5 (Build37)
Map Location 141,144,791 - 141,283,448
singlet/doubletdoublet
Overlap geneIqce, AA881470, 6530401C20Rik, Gna12
Upstream geneLOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3
Downstream geneCard11, LOC623466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109F07.bB6Ng01-109F07.g
ACCDH916266DH916267
length1,064727
definitionDH916266|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F07, 5' end.DH916267|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,282,369 - 141,283,448)(141,144,791 - 141,145,517)
sequence
aattcacggtcactgagcactgtggcagaggatctcggtaacagatccat
ggggcatctttaggtggtgctctagaaattttcactgactgtcttagact
tgagacctaagaatgctggttttgtttgtctcttttgcaagtccctctct
tcatttctcatagagtatgagctaaggaaggagcatgctgcatcccctgg
ttattagacaatctgcagatcctagtgccaacaaataagtctttgaattc
tgaagagactgctcttgtgtgctggtgcacacctgtaatcctagcactca
ggaggtggaacaagaggatagtcagagccacatggtaacaccttatctca
ggcacacagacacatacagatggaggaagaaagggagagtgtgcaactga
ctggagcaagcaaacctgggagaaaaaaaaaaaaaaaaaaaacagaaaaa
cctacaaggatgcatctcaaagcattcctcctggcaggagctgcaggatg
gccggatttactcagaaggttttgttttctttttccatcgagggatccag
ggccatgtatatcctaacaaagcacttgccaatgagctgtatagcccagc
ccagccaaacattaggacatgctgcttggaaatagtgattcttctaaagg
aagtcagtgtcagtgtgaatgcagttgtttatgtacacatgatgttgcga
atagttccaggtagtagatcccagaatatcctaggcagcctgcagggacc
tggtttgattcacctgtctctctaggcctggcacattgctgacacacagt
aggtactgaaatgtttgttggatatataaataatacttttggagcaagga
aagtctgggagaacttgaaacccagatttcagtattgctgatcttgtcac
agacaagatgtttcccagtttcaggaacagaagattgagatcctgtgagc
agacatagtatggccgcgtgtttcctgacagcttgccttggctgcagacc
tatgaggagagcatagctcatgggtctagagtatgacagtctctagtgga
gggacagtgaagca
gaattctatggcaagcacttcagagaaaacaaaaacatagggtcaggctg
aaggccagctagccacagtccctgggtgaggtgggagtcagcgttaggac
ttagtcttcattgtgtgctcctctgccgacagaattgggggcttgctcgg
gaaggtgccgccctgactgccactgtcacatttacctgagtagggctgca
ggtcaggcggttcctctgcctcatcttcgtccttcgcagcctccccactg
ctcgcctcgctgttctttcctgatggaccccattctgtataaggcatgtc
agtcttgggcaggaccagccaacctatccaattgttcccagcaaccacct
atcgccctgtccccgacagccagactttcttagtcctacgcctgacaccc
aagggccatcactcgcatgggcagagcgtcggctgaacttctacagctaa
cacgatcctaagcccctagcagtctccttgtgcatcctcgttcatgccag
tcacagggagccactgctgtaacccatccacacgacagtggaaccccagg
ctagtagactgcattggatatctctctcaggtctctgctcctgaggagag
atgccccacaggtagggggcttacagggactacacctcagtgtgggtcag
atcttatagctggtaacagagtctgcctgtgccctgggcttgctttttat
atatctgtacatgcgtgtgtgcgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_141282369_141283448
seq2: B6Ng01-109F07.b_57_1120 (reverse)

seq1  TGCTTCACTGTCCCCTCCACTTTAGAAGACTGTCATACTCTAGAACCCAT  50
      ||||||||||| ||||||||  ||| ||||||||||||||||| ||||||
seq2  TGCTTCACTGT-CCCTCCAC--TAG-AGACTGTCATACTCTAG-ACCCAT  45

seq1  GAGCTATTGCTCTTCCTCATTAGGTCTGGCAGCCAAGGGCAAGCTGTCAG  100
      |||||| ||||| |||||| ||||||| |||||||| |||||||||||||
seq2  GAGCTA-TGCTC-TCCTCA-TAGGTCT-GCAGCCAA-GGCAAGCTGTCAG  90

seq1  GAAACACGCGGCCATACTATGTTCTTGCTCACAGGATCTCAATCTTCTTG  150
      ||||||||||||||||||||||   |||||||||||||||||||||| ||
seq2  GAAACACGCGGCCATACTATGT--CTGCTCACAGGATCTCAATCTTC-TG  137

seq1  TTCCTGAAACTTGGGAAACATCTTGTCTGTTGACAAGATCAGCAATACTG  200
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TTCCTGAAAC-TGGGAAACATCTTGTCTG-TGACAAGATCAGCAATACTG  185

seq1  AAATCTGGGTTTCAAGTTCTCCCAGACTTTCCTTGCTCCAAAAGTATTTA  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAATCTGGGTTTCAAGTTCTCCCAGACTTTCCTTGCTCCAAAAGTA-TTA  234

seq1  TTTATATATCCAACAAACATTTCAGTACCTACTGTGTGTCAGCAATGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATCCAACAAACATTTCAGTACCTACTGTGTGTCAGCAATGTGC  284

seq1  CAGGCCTAGAGAGACAGGTGAATCAAACCAGGTCCCTGCAGGCTGCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTAGAGAGACAGGTGAATCAAACCAGGTCCCTGCAGGCTGCCTAG  334

seq1  GATATTCTGGGATCTACTACCTGGAACTATTCGCAACATCATGTGTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTGGGATCTACTACCTGGAACTATTCGCAACATCATGTGTACAT  384

seq1  AAACAACTGCATTCACACTGACACTGACTTCCTTTAGAAGAATCACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTGCATTCACACTGACACTGACTTCCTTTAGAAGAATCACTATT  434

seq1  TCCAAGCAGCATGTCCTAATGTTTGGCTGGGCTGGGCTATACAGCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAGCATGTCCTAATGTTTGGCTGGGCTGGGCTATACAGCTCATT  484

seq1  GGCAAGTGCTTTGTTAGGATATACATGGCCCTGGATCCCTCGATGGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTGCTTTGTTAGGATATACATGGCCCTGGATCCCTCGATGGAAAA  534

seq1  AGAAAACAAAACCTTCTGAGTAAATCCGGCCATCCTGCAGCTCCTGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAAACCTTCTGAGTAAATCCGGCCATCCTGCAGCTCCTGCCAG  584

seq1  GAGGAATGCTTTGAGATGCATCCTTGTAGGTTTTTCTGTTTTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGCTTTGAGATGCATCCTTGTAGGTTTTTCTGTTTTTTTTTTTT  634

seq1  TTTTTTTTCTCCCAGGTTTGCTTGCTCCAGTCAGTTGCACACTCTCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTCCCAGGTTTGCTTGCTCCAGTCAGTTGCACACTCTCCCTT  684

seq1  TCTTCCTCCATCTGTATGTGTCTGTGTGCCTGAGATAAGGTGTTACCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCATCTGTATGTGTCTGTGTGCCTGAGATAAGGTGTTACCATG  734

seq1  TGGCTCTGACTATCCTCTTGTTCCACCTCCTGAGTGCTAGGATTACAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGACTATCCTCTTGTTCCACCTCCTGAGTGCTAGGATTACAGGT  784

seq1  GTGCACCAGCACACAAGAGCAGTCTCTTCAGAATTCAAAGACTTATTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCAGCACACAAGAGCAGTCTCTTCAGAATTCAAAGACTTATTTGT  834

seq1  TGGCACTAGGATCTGCAGATTGTCTAATAACCAGGGGATGCAGCATGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTAGGATCTGCAGATTGTCTAATAACCAGGGGATGCAGCATGCTC  884

seq1  CTTCCTTAGCTCATACTCTATGAGAAATGAAGAGAGGGACTTGCAAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTAGCTCATACTCTATGAGAAATGAAGAGAGGGACTTGCAAAAGA  934

seq1  GACAAACAAAACCAGCATTCTTAGGTCTCAAGTCTAAGACAGTCAGTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAAAACCAGCATTCTTAGGTCTCAAGTCTAAGACAGTCAGTGAA  984

seq1  AATTTCTAGAGCACCACCTAAAGATGCCCCATGGATCTGTTACCGAGATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAGAGCACCACCTAAAGATGCCCCATGGATCTGTTACCGAGATC  1034

seq1  CTCTGCCACAGTGCTCAGTGACCGTGAATT  1080
      ||||||||||||||||||||||||||||||
seq2  CTCTGCCACAGTGCTCAGTGACCGTGAATT  1064

seq1: chr5_141144791_141145517
seq2: B6Ng01-109F07.g_68_794

seq1  GAATTCTATGGCAAGCACTTCAGAGAAAACAAAAACATAGGGTCAGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGCAAGCACTTCAGAGAAAACAAAAACATAGGGTCAGGCTG  50

seq1  AAGGCCAGCTAGCCACAGTCCCTGGGTGAGGTGGGAGTCAGCGTTAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCTAGCCACAGTCCCTGGGTGAGGTGGGAGTCAGCGTTAGGAC  100

seq1  TTAGTCTTCATTGTGTGCTCCTCTGCCGACAGAATTGGGGGCTTGCTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTCATTGTGTGCTCCTCTGCCGACAGAATTGGGGGCTTGCTCGG  150

seq1  GAAGGTGCCGCCCTGACTGCCACTGTCACATTTACCTGAGTAGGGCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGCCGCCCTGACTGCCACTGTCACATTTACCTGAGTAGGGCTGCA  200

seq1  GGTCAGGCGGTTCCTCTGCCTCATCTTCGTCCTTCGCAGCCTCCCCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGCGGTTCCTCTGCCTCATCTTCGTCCTTCGCAGCCTCCCCACTG  250

seq1  CTCGCCTCGCTGTTCTTTCCTGATGGACCCCATTCTGTATAAGGCATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCTCGCTGTTCTTTCCTGATGGACCCCATTCTGTATAAGGCATGTC  300

seq1  AGTCTTGGGCAGGACCAGCCAACCTATCCAATTGTTCCCAGCAACCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGGCAGGACCAGCCAACCTATCCAATTGTTCCCAGCAACCACCT  350

seq1  ATCGCCCTGTCCCCGACAGCCAGACTTTCTTAGTCCTACGCCTGACACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCCTGTCCCCGACAGCCAGACTTTCTTAGTCCTACGCCTGACACCC  400

seq1  AAGGGCCATCACTCGCATGGGCAGAGCGTCGGCTGAACTTCTACAGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCATCACTCGCATGGGCAGAGCGTCGGCTGAACTTCTACAGCTAA  450

seq1  CACGATCCTAAGCCCCTAGCAGTCTCCTTGTGCATCCTCGTTCATGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATCCTAAGCCCCTAGCAGTCTCCTTGTGCATCCTCGTTCATGCCAG  500

seq1  TCACAGGGAGCCACTGCTGTAACCCATCCACACGACAGTGGAACCCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGAGCCACTGCTGTAACCCATCCACACGACAGTGGAACCCCAGG  550

seq1  CTAGTAGACTGCATTGGATATCTCTCTCAGGTCTCTGCTCCTGAGGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGACTGCATTGGATATCTCTCTCAGGTCTCTGCTCCTGAGGAGAG  600

seq1  ATGCCCCACAGGTAGGGGGCTTACAGGGACTACACCTCAGTGTGGGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCACAGGTAGGGGGCTTACAGGGACTACACCTCAGTGTGGGTCAG  650

seq1  ATCTTATAGCTGGTAACAGAGTCTGCCTGTGCCCTGGGCTTGCTTTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATAGCTGGTAACAGAGTCTGCCTGTGCCCTGGGCTTGCTTTTTAT  700

seq1  ATATCTGTACATGCGTGTGTGCGTGTG  727
      |||||||||||||||||||||||||||
seq2  ATATCTGTACATGCGTGTGTGCGTGTG  727