BAC Information

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BAC

Clone NameB6Ng01-109G11
Chromosome5 (Build37)
Map Location 58,490,802 - 58,527,377
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109G11.bB6Ng01-109G11.g
ACCDH916322DH916323
length1,0831,012
definitionDH916322|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G11, 5' end.DH916323|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,526,287 - 58,527,377)(58,490,802 - 58,491,816)
sequence
gaattctccccctccagagagagagagagagagagagagagagagagttg
tcatgattgagagacaaattactccttcccaggtatgttgaacaatgtcc
agtaaaaataattttctgagtttggctgtagtgacacaagaatttaatca
cagaatttgggaggtaaatgcaggtgaattctgtgagtctacggccagct
tgggctacagtgtgagttccagatcaaccaaggatacagagagaaaccca
gtctcaaacaaaacaaaacaaaaacaaaacaaaacaaaataaataaaaaa
attctggtgatctgaatacttagaatactacccaaattcctatactatca
tccatgaactatcatatttagggaaatgtaaagtttcttttcctctcagt
gtatgatatcaggtaaatgtattttgattactacatgaattcttaaatgg
ctagatatatcaatatagttagaaatatgtgattaaatttttattgtaac
ttataaaacatttaatgatcataaaatctactttcctctatgatccagat
aatgtccacaagttctagaacttttggataaatcctacaaaacactttgg
aaactgtaatgtacaatatcagcacaagggcctgtaagcacatgtcagtg
ctaactttccagatggcagtggtaaatctacccttagcctcagaaccaac
accatggagcattgtttctctttagttttctctctctctctctctctctc
tctgtgtgtgtgtgtgtgtggttttatgtctgtcattatctctgcagatg
tctaagagagccagacattcctgtagctaaattatcttcttggaacctaa
ctctgggttcctgcaaaggctgtaaagctgttaggagacttaactactaa
gccatctattcagacccaccagattggtgtgttggctacactgtgctcat
atatccctatatagctgaaggctgtgttttgctttgtctaagatattttt
atggaggttatgacctcatgggtatgtggacctaaacttttcataactac
ttgaatattggaatggaatctgagttgtttttt
gaattctttgcatcaaaggtaagggtctgaattatttttagccttgcaca
aatctaagaatatctactttaaaaaaattaaaattctccaggtatatata
ctgaattggtagacttctgactcagagacactctaattgcacagtgacat
ctaaacatccaccatgcactctctttccatgcacacaaacacttaagaaa
ctaatcatttaatattgattatttagtgtttcactgtcaacaaaactgat
gtcaaatatttaggtttgcccaagcttaagttcaattaagttaagcaggt
atccactgtcactgaagtttatcaggtctggagagtcatataagaaaaat
aaagcataaaatgaactactaaataagacattattgtgggtgtagaatga
acagttaatcaaatacctggtagtttttcacaagctgtagattgagttca
taagtttctgactacctttggatttagtcatgtttttgaagagatatctg
caaagggttattggctttattttagaactaaggaagacgtttcataagaa
gtacaaagatacttctgcatattaaactggtacaaagctagcttgccata
tcatatattacagaactgactttgttgaaagagtttcattattttgccca
aacaacttatagtttcaagtatccaaaatcttagaacacatatcagtaaa
aaataacttcacatcatctgaaggctgtggttatatcaacacaatggatt
ttattattttctgtttttggtttttcttttgtttttgttttcttttgttt
ttgttaatgttgcagcattctcaagctgaagatgctagcataatctatcc
tgagaagagtgggtgatagcctctaggctatagagagcatgtaaggaata
cagtgacttccaacactcagctacatcataatgtgaactaccataaccct
gtggggaaccatttttcaaaggatgatgtttattatataatttacttatg
tgttttcaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58526287_58527377
seq2: B6Ng01-109G11.b_48_1130 (reverse)

seq1  AAAAAACAAACTACAGTGTACATTTCAATATTCAAGTTAGTATTTGAAAA  50
      ||||||| |||| |||  | |||| ||||||||||| |||| | ||||||
seq2  AAAAAAC-AACT-CAGATTCCATTCCAATATTCAAG-TAGT-TATGAAAA  46

seq1  GTTTATGTACAACATTACCATGAGGTCATAACCTCATTAAAAATATCTTA  100
      ||||| || | ||||  ||||||||||||||||||  |||||||||||||
seq2  GTTTAGGT-CCACATACCCATGAGGTCATAACCTCCATAAAAATATCTTA  95

seq1  GAACAAAGCAAAACAACAGCCTTCAGCTATATAGGGATATATGAGCACAG  150
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  G-ACAAAGCAAAAC-ACAGCCTTCAGCTATATAGGGATATATGAGCACAG  143

seq1  TGTAGGCTAACACACCAATCTGGTGGGTCTGAATAGATGGCTTAGTAGTT  200
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTA-GCCAACACACCAATCTGGTGGGTCTGAATAGATGGCTTAGTAGTT  192

seq1  AAGTCTCCTAACAGCCTTACAGCCTTTGCAGGAACCCAGAGTTAGGTTCC  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCTAACAGCTTTACAGCCTTTGCAGGAACCCAGAGTTAGGTTCC  242

seq1  AAGAAGATAATTTAGCTACAGGAATGTCTGGCTCTCTTAGACATCTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATAATTTAGCTACAGGAATGTCTGGCTCTCTTAGACATCTGCAG  292

seq1  AGATAATGACAGACATAAAACCACACACACACACACACAGAGAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGACAGACATAAAACCACACACACACACACACAGAGAGAGAGAG  342

seq1  AGAGAGAGAGAGAAAACTAAAGAGAAACAATGCTCCATGGTGTTGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAAAACTAAAGAGAAACAATGCTCCATGGTGTTGGTTCT  392

seq1  GAGGCTAAGGGTAGATTTACCACTGCCATCTGGAAAGTTAGCACTGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAAGGGTAGATTTACCACTGCCATCTGGAAAGTTAGCACTGACAT  442

seq1  GTGCTTACAGGCCCTTGTGCTGATATTGTACATTACAGTTTCCAAAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACAGGCCCTTGTGCTGATATTGTACATTACAGTTTCCAAAGTGT  492

seq1  TTTGTAGGATTTATCCAAAAGTTCTAGAACTTGTGGACATTATCTGGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGATTTATCCAAAAGTTCTAGAACTTGTGGACATTATCTGGATC  542

seq1  ATAGAGGAAAGTAGATTTTATGATCATTAAATGTTTTATAAGTTACAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGAAAGTAGATTTTATGATCATTAAATGTTTTATAAGTTACAATA  592

seq1  AAAATTTAATCACATATTTCTAACTATATTGATATATCTAGCCATTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAATCACATATTTCTAACTATATTGATATATCTAGCCATTTAAG  642

seq1  AATTCATGTAGTAATCAAAATACATTTACCTGATATCATACACTGAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTAGTAATCAAAATACATTTACCTGATATCATACACTGAGAGG  692

seq1  AAAAGAAACTTTACATTTCCCTAAATATGATAGTTCATGGATGATAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACTTTACATTTCCCTAAATATGATAGTTCATGGATGATAGTAT  742

seq1  AGGAATTTGGGTAGTATTCTAAGTATTCAGATCACCAGAATTTTTTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTGGGTAGTATTCTAAGTATTCAGATCACCAGAATTTTTTTATT  792

seq1  TATTTTGTTTTGTTTTGTTTTTGTTTTGTTTTGTTTGAGACTGGGTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTTGTTTTGTTTTTGTTTTGTTTTGTTTGAGACTGGGTTTCT  842

seq1  CTCTGTATCCTTGGTTGATCTGGAACTCACACTGTAGCCCAAGCTGGCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATCCTTGGTTGATCTGGAACTCACACTGTAGCCCAAGCTGGCCG  892

seq1  TAGACTCACAGAATTCACCTGCATTTACCTCCCAAATTCTGTGATTAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCACAGAATTCACCTGCATTTACCTCCCAAATTCTGTGATTAAAT  942

seq1  TCTTGTGTCACTACAGCCAAACTCAGAAAATTATTTTTACTGGACATTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTCACTACAGCCAAACTCAGAAAATTATTTTTACTGGACATTGT  992

seq1  TCAACATACCTGGGAAGGAGTAATTTGTCTCTCAATCATGACAACTCTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATACCTGGGAAGGAGTAATTTGTCTCTCAATCATGACAACTCTCT  1042

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTGGAGGGGGAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTGGAGGGGGAGAATTC  1083

seq1: chr5_58490802_58491816
seq2: B6Ng01-109G11.g_70_1081

seq1  GAATTCTTTGCATCAAAGGTAAGGGTCTGAATTATTTTTAGCCTTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCATCAAAGGTAAGGGTCTGAATTATTTTTAGCCTTGCACA  50

seq1  AATCTAAGAATATCTACTTTAAAAAAATTAAAATTCTCCAGGTATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGAATATCTACTTTAAAAAAATTAAAATTCTCCAGGTATATATA  100

seq1  CTGAATTGGTAGACTTCTGACTCAGAGACACTCTAATTGCACAGTGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGGTAGACTTCTGACTCAGAGACACTCTAATTGCACAGTGACAT  150

seq1  CTAAACATCCACCATGCACTCTCTTTCCATGCACACAAACACTTAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATCCACCATGCACTCTCTTTCCATGCACACAAACACTTAAGAAA  200

seq1  CTAATCATTTAATATTGATTATTTAGTGTTTCACTGTCAACAAAACTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCATTTAATATTGATTATTTAGTGTTTCACTGTCAACAAAACTGAT  250

seq1  GTCAAATATTTAGGTTTGCCCAAGCTTAAGTTCAATTAAGTTAAGCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATATTTAGGTTTGCCCAAGCTTAAGTTCAATTAAGTTAAGCAGGT  300

seq1  ATCCACTGTCACTGAAGTTTATCAGGTCTGGAGAGTCATATAAGAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGTCACTGAAGTTTATCAGGTCTGGAGAGTCATATAAGAAAAAT  350

seq1  AAAGCATAAAATGAACTACTAAATAAGACATTATTGTGGGTGTAGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAAAATGAACTACTAAATAAGACATTATTGTGGGTGTAGAATGA  400

seq1  ACAGTTAATCAAATACCTGGTAGTTTTTCACAAGCTGTAGATTGAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAATCAAATACCTGGTAGTTTTTCACAAGCTGTAGATTGAGTTCA  450

seq1  TAAGTTTCTGACTACCTTTGGATTTAGTCATGTTTTTGAAGAGATATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCTGACTACCTTTGGATTTAGTCATGTTTTTGAAGAGATATCTG  500

seq1  CAAAGGGTTATTGGCTTTATTTTAGAACTAAGGAAGACGTTTCATAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTTATTGGCTTTATTTTAGAACTAAGGAAGACGTTTCATAAGAA  550

seq1  GTACAAAGATACTTCTGCATATTAAACTGGTACAAAGCTAGCTTGCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGATACTTCTGCATATTAAACTGGTACAAAGCTAGCTTGCCATA  600

seq1  TCATATATTACAGAACTGACTTTGTTGAAAGAGTTTCATTATTTTGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTACAGAACTGACTTTGTTGAAAGAGTTTCATTATTTTGCCCA  650

seq1  AACAACTTATAGTTTCAAGTATCCAAAATCTTAGAACACATATCAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTATAGTTTCAAGTATCCAAAATCTTAGAACACATATCAGTAAA  700

seq1  AAATAACTTCACATCATCTGAAGGCTGTGGTTATATCAACACAATGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTCACATCATCTGAAGGCTGTGGTTATATCAACACAATGGATT  750

seq1  TTATTATTTTCTGTTTTTGGTTTTTCTTTTGTTTTTGTTTTCTTTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTCTGTTTTTGGTTTTTCTTTTGTTTTTGTTTTCTTTTGTTT  800

seq1  TTGTTAATGTTGCAGCATTCTCAAGCTGAAGATGCTAGCATAATCTATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATGTTGCAGCATTCTCAAGCTGAAGATGCTAGCATAATCTATCC  850

seq1  TGAGAAGAGTGGGTGATAGCCTCTAGGCTATAGAGAGCATGTAAGGAAAT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAGAAGAGTGGGTGATAGCCTCTAGGCTATAGAGAGCATGTAAGG-AAT  899

seq1  ACAGGTGACTTCCAACACTCAGCTACATCATAATGTGAACTACCAATAAC  950
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACA-GTGACTTCCAACACTCAGCTACATCATAATGTGAACTACC-ATAAC  947

seq1  CCTGTGTGAAACCATTTTTCAAAGGATGATGTTTATTATATATTTTACTT  1000
      |||||| | ||||||||||||||||||||||||||||||||| |||||||
seq2  CCTGTGGGGAACCATTTTTCAAAGGATGATGTTTATTATATAATTTACTT  997

seq1  ATGTGTTCTCAATGT  1015
      ||||||| |||||||
seq2  ATGTGTTTTCAATGT  1012