BAC Information

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BAC

Clone NameB6Ng01-109G16
Chromosome5 (Build37)
Map Location 99,393,477 - 99,540,808
singlet/doubletdoublet
Overlap genePrkg2, LOC100041680
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3
Downstream geneRasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109G16.bB6Ng01-109G16.g
ACCDH916332DH916333
length1,133805
definitionDH916332|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G16, 5' end.DH916333|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,539,650 - 99,540,808)(99,393,477 - 99,394,281)
sequence
gaattcttccttgataaaataataatctcctttaacatcttgttggaaat
tgttactgagatctttgatttttgtgcttttttaaataacattatttttc
ccctcctttggaataggcagtgtttccacttctagagtgtcaacatctcg
gctacttcctgcacttatgcaaaaattacaaacaggagtagagtttgcct
ttgcaagccctcctgcactgggaaagctctccttacactgctgtctgaga
ttctgggcctgctgcccctgccgtcatgttcattcaagcctctcggatgg
ctctgttcattcagccaggaggctgcccctcccctctgtggatttctctg
catgctgacccacaggcaggcgatgcttgtttgctgtcagcctatctcct
gactgtaaatgaggccatgaattgtcattgaacacagcctttggtgaaat
gcagaactaagagagatatgcagatgaagctagccaacattgagctttaa
ttgatctaaatgaagtgcctttggatcttaaattatccgaaaactcccag
ggcctcctttcgcccctttagagcccagcgttaagttcattagctcagaa
gtggtgcctgacaagatcctgagataattgggactttgatatggcattgg
atgctctcgtttaagccacagaaatgatagaaggttttgaagtctgaata
atttaaaaaatacattaaaatttaagtggcccataattagatatttacgg
ggtacagtataacactcacatatgcatatacaattcacagttataagatc
aggtaattggcatgtccagaacctcaacatttgtcatttcttcatataaa
gaacgtccaaaatcttctctgctttctaatttgaaatatatattaattgt
ttcaactatattatcttctcccattacaaggcattagctttttttttctc
tagaggtggagaaaggaaaccctcatacgcagtggtagcaatataatcca
cacagctatgtgatatggtacggggtcctcgactaagatctgcagcgaac
tatctatgattcagagtttacatggaattatcaagaatagcatgttggag
ctctatgtacactctatcatgagcattataata
gaattctccccccccacccccggtggccaagaattcttagaggaaacttt
ttctttactctcccatgagctaaagatgagataagagcgtctgtctgcac
gtactgcctttataacactgatatttgtttaacctgtttgcctcctgcct
ctgtagagagttctctagatcattttcccacaatgcccagagctaaggat
tgctctcctattcctcaatgacacagccactaaatcaaaattctaggtca
ttcagatttgctggacacggagctccgatgacagtactgaggactgatcc
gagggtttgcctggataaggcagctgctgtgcaccttggacccttctgtg
tacaacgtaaaaaccatccactactgttctatcttctttcctggccccat
aggagctcctgcgttgtctaaggaacccctcagtgcattcccagccctct
tcttcatgtcttatctggtatttccaaacattttgtagtgaaagtaattc
tggatatctagttcaaaatataattggcgattgaaaattcaacactgatt
tttttttagatacctcaaattgctaactgtttattttactcattgataaa
taaatgagaaggctgggtaataattgcaaacaggaagtccctgccaccta
gtgccgtaaatactaattatcctctccaaggattttgggaaagcaactat
gaaaagtaagagatacatttaataaacaatcttcaaacctcacgatagtt
tttctttcttctagaatattccagagagtttccctaaaggctgggggggg
ggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_99539650_99540808
seq2: B6Ng01-109G16.b_48_1180 (reverse)

seq1  TATTAATAATGCTTCAATGGATATGGAGTGTACATAGTGCTTCAACATGC  50
      |||| ||||||||   |||   || |||||||||||| ||| ||||||||
seq2  TATT-ATAATGCT--CATG---ATAGAGTGTACATAGAGCTCCAACATGC  44

seq1  TATTTCTTTTGAATAAATTCTCATGGTAAACCTCTTGGATCATAGATAGT  100
      |||   | ||||   ||||| ||| ||||| ||| || ||||||||||||
seq2  TAT---TCTTGA--TAATTC-CAT-GTAAA-CTC-TGAATCATAGATAGT  85

seq1  TCTGCTTGCAGATCTTTGGTTCGAGGGACCCCCGTACCATTATCCACATA  150
      || || |||||||||| |  ||||||   |||||||||| ||| ||||||
seq2  TC-GC-TGCAGATCTTAG--TCGAGG--ACCCCGTACCA-TAT-CACATA  127

seq1  GCTGTGTGGATTATATTGCTACCACTGCGTATGAGGGTTTCCTTTCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGGATTATATTGCTACCACTGCGTATGAGGGTTTCCTTTCTCCA  177

seq1  CCTCTAGGAGAAAAAAAAAGCTAATGCCTTGTAATGGGAGAAGATAATTA  250
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTCTA-GAGAAAAAAAAAGCTAATGCCTTGTAATGGGAGAAGATAA-TA  225

seq1  TAGTTGAAACAATTAATTATATATTTCAAATTAGAAAGCAGAGAAGATTT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGTTGAAACAATTAA-TATATATTTCAAATTAGAAAGCAGAGAAGATTT  274

seq1  TGGACGTTCTTTATATGAAGAAATGACAAATGTTGAGGTTCTGGACATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGTTCTTTATATGAAGAAATGACAAATGTTGAGGTTCTGGACATGC  324

seq1  CAATTACCTGATCTTATAACTGTGAATTGTATATGCATATGTGAGTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACCTGATCTTATAACTGTGAATTGTATATGCATATGTGAGTGTTA  374

seq1  TACTGTACCCCGTAAATATCTAATTATGGGCCACTTAAATTTTAATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTACCCCGTAAATATCTAATTATGGGCCACTTAAATTTTAATGTAT  424

seq1  TTTTTAAATTATTCAGACTTCAAAACCTTCTATCATTTCTGTGGCTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATTATTCAGACTTCAAAACCTTCTATCATTTCTGTGGCTTAAA  474

seq1  CGAGAGCATCCAATGCCATATCAAAGTCCCAATTATCTCAGGATCTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGCATCCAATGCCATATCAAAGTCCCAATTATCTCAGGATCTTGTC  524

seq1  AGGCACCACTTCTGAGCTAATGAACTTAACGCTGGGCTCTAAAGGGGCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCACTTCTGAGCTAATGAACTTAACGCTGGGCTCTAAAGGGGCGA  574

seq1  AAGGAGGCCCTGGGAGTTTTCGGATAATTTAAGATCCAAAGGCACTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCCCTGGGAGTTTTCGGATAATTTAAGATCCAAAGGCACTTCAT  624

seq1  TTAGATCAATTAAAGCTCAATGTTGGCTAGCTTCATCTGCATATCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCAATTAAAGCTCAATGTTGGCTAGCTTCATCTGCATATCTCTCT  674

seq1  TAGTTCTGCATTTCACCAAAGGCTGTGTTCAATGACAATTCATGGCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGCATTTCACCAAAGGCTGTGTTCAATGACAATTCATGGCCTCA  724

seq1  TTTACAGTCAGGAGATAGGCTGACAGCAAACAAGCATCGCCTGCCTGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTCAGGAGATAGGCTGACAGCAAACAAGCATCGCCTGCCTGTGG  774

seq1  GTCAGCATGCAGAGAAATCCACAGAGGGGAGGGGCAGCCTCCTGGCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCATGCAGAGAAATCCACAGAGGGGAGGGGCAGCCTCCTGGCTGAA  824

seq1  TGAACAGAGCCATCCGAGAGGCTTGAATGAACATGACGGCAGGGGCAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAGCCATCCGAGAGGCTTGAATGAACATGACGGCAGGGGCAGCA  874

seq1  GGCCCAGAATCTCAGACAGCAGTGTAAGGAGAGCTTTCCCAGTGCAGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGAATCTCAGACAGCAGTGTAAGGAGAGCTTTCCCAGTGCAGGAG  924

seq1  GGCTTGCAAAGGCAAACTCTACTCCTGTTTGTAATTTTTGCATAAGTGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCAAAGGCAAACTCTACTCCTGTTTGTAATTTTTGCATAAGTGCA  974

seq1  GGAAGTAGCCGAGATGTTGACACTCTAGAAGTGGAAACACTGCCTATTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGCCGAGATGTTGACACTCTAGAAGTGGAAACACTGCCTATTCC  1024

seq1  AAAGGAGGGGAAAAATAATGTTATTTAAAAAAGCACAAAAATCAAAGATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGGGAAAAATAATGTTATTTAAAAAAGCACAAAAATCAAAGATC  1074

seq1  TCAGTAACAATTTCCAACAAGATGTTAAAGGAGATTATTATTTTATCAAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACAATTTCCAACAAGATGTTAAAGGAGATTATTATTTTATCAAG  1124

seq1  GAAGAATTC  1159
      |||||||||
seq2  GAAGAATTC  1133

seq1: chr5_99393477_99394281
seq2: B6Ng01-109G16.g_69_873

seq1  GAATTCTCCCCCCCCACCCCCGGTGGCCAAGAATTCTTAGAGGAAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCCCCCACCCCCGGTGGCCAAGAATTCTTAGAGGAAACTTT  50

seq1  TTCTTTACTCTCCCATGAGCTAAAGATGAGATAAGAGCGTCTGTCTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACTCTCCCATGAGCTAAAGATGAGATAAGAGCGTCTGTCTGCAC  100

seq1  GTACTGCCTTTATAACACTGATATTTGTTTAACCTGTTTGCCTCCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCCTTTATAACACTGATATTTGTTTAACCTGTTTGCCTCCTGCCT  150

seq1  CTGTAGAGAGTTCTCTAGATCATTTTCCCACAATGCCCAGAGCTAAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGAGTTCTCTAGATCATTTTCCCACAATGCCCAGAGCTAAGGAT  200

seq1  TGCTCTCCTATTCCTCAATGACACAGCCACTAAATCAAAATTCTAGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCTATTCCTCAATGACACAGCCACTAAATCAAAATTCTAGGTCA  250

seq1  TTCAGATTTGCTGGACACGGAGCTCCGATGACAGTACTGAGGACTGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTTGCTGGACACGGAGCTCCGATGACAGTACTGAGGACTGATCC  300

seq1  GAGGGTTTGCCTGGATAAGGCAGCTGCTGTGCACCTTGGACCCTTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTGCCTGGATAAGGCAGCTGCTGTGCACCTTGGACCCTTCTGTG  350

seq1  TACAACGTAAAAACCATCCACTACTGTTCTATCTTCTTTCCTGGCCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACGTAAAAACCATCCACTACTGTTCTATCTTCTTTCCTGGCCCCAT  400

seq1  AGGAGCTCCTGCGTTGTCTAAGGAACCCCTCAGTGCATTCCCAGCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCCTGCGTTGTCTAAGGAACCCCTCAGTGCATTCCCAGCCCTCT  450

seq1  TCTTCATGTCTTATCTGGTATTTCCAAACATTTTGTAGTGAAAGTAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTCTTATCTGGTATTTCCAAACATTTTGTAGTGAAAGTAATTC  500

seq1  TGGATATCTAGTTCAAAATATAATTGGCGATTGAAAATTCAACACTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATCTAGTTCAAAATATAATTGGCGATTGAAAATTCAACACTGATT  550

seq1  TTTTTTTAGATACCTCAAATTGCTAACTGTTTATTTTACTCATTGATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGATACCTCAAATTGCTAACTGTTTATTTTACTCATTGATAAA  600

seq1  TAAATGAGAAGGCTGGGTAATAATTGCAAACAGGAAGTCCCTGCCACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGAAGGCTGGGTAATAATTGCAAACAGGAAGTCCCTGCCACCTA  650

seq1  GTGCCGTAAATACTAATTATCCTCTCCAAGGATTTTGGGAAAGCAACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGTAAATACTAATTATCCTCTCCAAGGATTTTGGGAAAGCAACTAT  700

seq1  GAAAAGTAAGAGATACATTTAATAAACAATCTTCAAACCTCACGATAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAAGAGATACATTTAATAAACAATCTTCAAACCTCACGATAGTT  750

seq1  TTTCTTTCTTCTAGAATATTCCAGAGAGTTTCCCTAAAGGCTGGGGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTCTAGAATATTCCAGAGAGTTTCCCTAAAGGCTGGGGGGGG  800

seq1  GGGGG  805
      |||||
seq2  GGGGG  805