BAC Information

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BAC

Clone NameB6Ng01-109G18
Chromosome5 (Build37)
Map Location 68,331,925 - 68,419,832
singlet/doubletdoublet
Overlap geneEG330097, EG666977
Upstream gene3732412D22Rik, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458
Downstream geneAY616753, LOC666996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109G18.bB6Ng01-109G18.g
ACCDH916336DH916337
length7111,076
definitionDH916336|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G18, 5' end.DH916337|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,331,925 - 68,332,635)(68,418,740 - 68,419,832)
sequence
gaattctatgctgtttctcaaggatattcaatttgagtgagatagaactg
gtacataaaatatttacctctgaggagtggagagaggtcatgcataaaca
tacacttgttagagagaaagaacttcctttagcaagatgcagagagcagt
ctcagtgatttccaaatctaattacacacagtggcattacaacaaatgat
gttccttgtccatcttaaaggactcttgttagtattgcaataataagatt
aaagaattgtattcaagtttggaaactggcgaggattcaaataggagaca
tttgctgctgaggtatacctgctgcaagttgttgggaactaaaaaagggg
gaccctggggaagtgggggaagggaaaagacccatgctccgccagagttt
ccttattctctggttagtcagacttgggagagctgctacctaccctttcc
actcatccctgggtgggcattcccctatcccactcttcagggggtggcca
agggcaaccctacctggggatccccagagctaccttgctaaaaccaccgg
ggttatgtgagagagggataagggaagaggttcccaacacctgtaagagt
gtatgcagcagatcttaagcagagactctctatggtttaagagctttatt
atagaaatgcagggggaaagagagaagggagagagaaagagagagagaga
gagagagagag
gaattctctgtttgaccaagcagaaatgataagcctttaagaaaaggaag
tgttatgctggagtctagcaaaattaagatatacttatgcatgaaagctt
gagaggcagagatggaggtaccttcaaagctgtgggcaatatatgtaaat
gtccttggggagaaaaccaattgacttgttctgaaaattaaaaaatatca
gagtggccaaagacaattatgccttccattttctaagatttttttctaaa
gcaggactctcccttcctagtgtaccctttagtttcctctcttaaacctg
aaaccatgggacaagtcatattaccaacccaggaacatatcaagtattgg
tatgcctcacatcagtcacatatattcatttaaagtaacaataatttata
aattatagaagctctggatctgtgaaaaatacgatcattcataaatccaa
tttttaaatatcctttcttcacgtagaagtagaaacactaacctagcaac
tagatctaagtctggacatttcttgtttgtgtcagttttgttagtgcaat
atctaacaatgtcctaattatagagaagaaatggcatcagaactaaactc
gttctgctttcaaaaccttacccctcactactcttctatgtctggatacc
actttgtgtaatggaaaatcattttaaccgtgtccttggatttgtagtgt
aattcttctcaatgctctgcatcacagtgaatgccccaatcccttgtgta
ctactgacttttaagcttcacattcaccaatctgatttttgctcttgaaa
acactagtggttggtgactggccatgaactaattatgagctagaacctcc
acagctgggagcagccctgtgctctttatagccatctccagtacttatta
tgataacgggagctaacacagaaacagaaagcaattttccgaaacggagt
ttaacagatgcagcactgaatgtggcatctttggaagcaagtccttaaat
gtcatttggttttctgatttagaatggcctcgacaagtagaatttcaacc
tctaggtaacgagagtaccttagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68331925_68332635
seq2: B6Ng01-109G18.b_49_759

seq1  GAATTCTATGCTGTTTCTCAAGGATATTCAATTTGAGTGAGATAGAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCTGTTTCTCAAGGATATTCAATTTGAGTGAGATAGAACTG  50

seq1  GTACATAAAATATTTACCTCTGAGGAGTGGAGAGAGGTCATGCATAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAAAATATTTACCTCTGAGGAGTGGAGAGAGGTCATGCATAAACA  100

seq1  TACACTTGTTAGAGAGAAAGAACTTCCTTTAGCAAGATGCAGAGAGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGTTAGAGAGAAAGAACTTCCTTTAGCAAGATGCAGAGAGCAGT  150

seq1  CTCAGTGATTTCCAAATCTAATTACACACAGTGGCATTACAACAAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGATTTCCAAATCTAATTACACACAGTGGCATTACAACAAATGAT  200

seq1  GTTCCTTGTCCATCTTAAAGGACTCTTGTTAGTATTGCAATAATAAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGTCCATCTTAAAGGACTCTTGTTAGTATTGCAATAATAAGATT  250

seq1  AAAGAATTGTATTCAAGTTTGGAAACTGGCGAGGATTCAAATAGGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTGTATTCAAGTTTGGAAACTGGCGAGGATTCAAATAGGAGACA  300

seq1  TTTGCTGCTGAGGTATACCTGCTGCAAGTTGTTGGGAACTAAAAAAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCTGAGGTATACCTGCTGCAAGTTGTTGGGAACTAAAAAAGGGG  350

seq1  GACCCTGGGGAAGTGGGGGAAGGGAAAAGACCCATGCTCCGCCAGAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGGGAAGTGGGGGAAGGGAAAAGACCCATGCTCCGCCAGAGTTT  400

seq1  CCTTATTCTCTGGTTAGTCAGACTTGGGAGAGCTGCTACCTACCCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTCTCTGGTTAGTCAGACTTGGGAGAGCTGCTACCTACCCTTTCC  450

seq1  ACTCATCCCTGGGTGGGCATTCCCCTATCCCACTCTTCAGGGGGTGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCCCTGGGTGGGCATTCCCCTATCCCACTCTTCAGGGGGTGGCCA  500

seq1  AGGGCAACCCTACCTGGGGATCCCCAGAGCTACCTTGCTAAAACCACCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAACCCTACCTGGGGATCCCCAGAGCTACCTTGCTAAAACCACCGG  550

seq1  GGTTATGTGAGAGAGGGATAAGGGAAGAGGTTCCCAACACCTGTAAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGTGAGAGAGGGATAAGGGAAGAGGTTCCCAACACCTGTAAGAGT  600

seq1  GTATGCAGCAGATCTTAAGCAGAGACTCTCTATGGTTTAAGAGCTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAGCAGATCTTAAGCAGAGACTCTCTATGGTTTAAGAGCTTTATT  650

seq1  ATAGAAATGCAGGGGGAAAGAGAGAAGGGAGAGAGAAAGAGAGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATGCAGGGGGAAAGAGAGAAGGGAGAGAGAAAGAGAGAGAGAGA  700

seq1  GAGAGAGAGAG  711
      |||||||||||
seq2  GAGAGAGAGAG  711

seq1: chr5_68418740_68419832
seq2: B6Ng01-109G18.g_67_1142 (reverse)

seq1  TCTCTAAGGGTACTCTCGTTTTACCTTAAGAGTTTGAAAATTCTACACTT  50
      ||||||| ||||||||||  ||||||  |||| ||| |||||||||   |
seq2  TCTCTAA-GGTACTCTCG--TTACCT--AGAGGTTG-AAATTCTAC---T  41

seq1  TGTTCGAGGCCATTCTAAATACAGAAAACAAAATGACACTCTAAGGACTT  100
      || ||||||||||||||||| |||||||| |||||||| | |||||||||
seq2  TG-TCGAGGCCATTCTAAAT-CAGAAAACCAAATGACA-TTTAAGGACTT  88

seq1  GGCCTCCAAAGATGCCACATTCAGTGCTGGCATCTGTTTAAACTCCGTTT  150
       || |||||||||||||||||||||||| ||||||| |||||||||||||
seq2  -GCTTCCAAAGATGCCACATTCAGTGCT-GCATCTG-TTAAACTCCGTTT  135

seq1  CGGAAAATTGCTTTCTGTTTCTGTGTTAGCTTCCTGTTATCATAATAAGT  200
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  CGGAAAATTGCTTTCTGTTTCTGTGTTAGC-TCCCGTTATCATAATAAGT  184

seq1  ACTGGAGATGGCTATAAAGAGCACAGGGCTGCCTCCCAGCTGTGGAGGTT  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTGGAGATGGCTATAAAGAGCACAGGGCTG-CTCCCAGCTGTGGAGGTT  233

seq1  CTAGCTCATAATTAGTTCATGGCCAGTCACCAACCACTAGTGTTTTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCATAATTAGTTCATGGCCAGTCACCAACCACTAGTGTTTTCAAG  283

seq1  AGCAAAAATCAGATTGGTGAATGTGAAGCTTAAAAGTCAGTAGTACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAATCAGATTGGTGAATGTGAAGCTTAAAAGTCAGTAGTACACAA  333

seq1  GGGATTGGGGCATTCACTGTGATGCAGAGCATTGAGAAGAATTACACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGGGCATTCACTGTGATGCAGAGCATTGAGAAGAATTACACTAC  383

seq1  AAATCCAAGGACACGGTTAAAATGATTTTCCATTACACAAAGTGGTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAGGACACGGTTAAAATGATTTTCCATTACACAAAGTGGTATCC  433

seq1  AGACATAGAAGAGTAGTGAGGGGTAAGGTTTTGAAAGCAGAACGAGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGAAGAGTAGTGAGGGGTAAGGTTTTGAAAGCAGAACGAGTTTA  483

seq1  GTTCTGATGCCATTTCTTCTCTATAATTAGGACATTGTTAGATATTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATGCCATTTCTTCTCTATAATTAGGACATTGTTAGATATTGCAC  533

seq1  TAACAAAACTGACACAAACAAGAAATGTCCAGACTTAGATCTAGTTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAACTGACACAAACAAGAAATGTCCAGACTTAGATCTAGTTGCTA  583

seq1  GGTTAGTGTTTCTACTTCTACGTGAAGAAAGGATATTTAAAAATTGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGTTTCTACTTCTACGTGAAGAAAGGATATTTAAAAATTGGATT  633

seq1  TATGAATGATCGTATTTTTCACAGATCCAGAGCTTCTATAATTTATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGATCGTATTTTTCACAGATCCAGAGCTTCTATAATTTATAAAT  683

seq1  TATTGTTACTTTAAATGAATATATGTGACTGATGTGAGGCATACCAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTACTTTAAATGAATATATGTGACTGATGTGAGGCATACCAATAC  733

seq1  TTGATATGTTCCTGGGTTGGTAATATGACTTGTCCCATGGTTTCAGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGTTCCTGGGTTGGTAATATGACTTGTCCCATGGTTTCAGGTTT  783

seq1  AAGAGAGGAAACTAAAGGGTACACTAGGAAGGGAGAGTCCTGCTTTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGAAACTAAAGGGTACACTAGGAAGGGAGAGTCCTGCTTTAGAA  833

seq1  AAAAATCTTAGAAAATGGAAGGCATAATTGTCTTTGGCCACTCTGATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTAGAAAATGGAAGGCATAATTGTCTTTGGCCACTCTGATATT  883

seq1  TTTTAATTTTCAGAACAAGTCAATTGGTTTTCTCCCCAAGGACATTTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTCAGAACAAGTCAATTGGTTTTCTCCCCAAGGACATTTACA  933

seq1  TATATTGCCCACAGCTTTGAAGGTACCTCCATCTCTGCCTCTCAAGCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGCCCACAGCTTTGAAGGTACCTCCATCTCTGCCTCTCAAGCTTT  983

seq1  CATGCATAAGTATATCTTAATTTTGCTAGACTCCAGCATAACACTTCCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATAAGTATATCTTAATTTTGCTAGACTCCAGCATAACACTTCCTT  1033

seq1  TTCTTAAAGGCTTATCATTTCTGCTTGGTCAAACAGAGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAGGCTTATCATTTCTGCTTGGTCAAACAGAGAATTC  1076