BAC Information

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BAC

Clone NameB6Ng01-109J07
Chromosome5 (Build37)
Map Location 40,155,267 - 40,225,668
singlet/doubletdoublet
Overlap geneEG665839
Upstream geneClnk, LOC384174, Hs3st1
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109J07.bB6Ng01-109J07.g
ACCDH916453DH916454
length4681,081
definitionDH916453|Mus musculus domesticus DNA, BAC clone: B6Ng01-109J07, 5' end.DH916454|Mus musculus domesticus DNA, BAC clone: B6Ng01-109J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,225,195 - 40,225,668)(40,155,267 - 40,156,345)
sequence
caggtagtcactttcaagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgatgcattatttacaaaattgtctctgctctttaagagttt
atcaaaatcaagatgacaagctgatggtcagtttaaaaattatattcatt
tacaacaatactgaagagctgaaatgaaaatcatttcttgtatagtaact
gtgcccatggtagctggttgggagtttgagactaatctgtgacattggct
gtatcagtgaacttgaagggagggcatttctgtgcataaattcacattac
agtgtccatggtgatatgggtgtgattacatctcttcgcccttagagcaa
cagtaaaactaaaaatctcaataacaaatgcatttcataagtcattgtgc
acttgtatgtgtgcagaggttcagaagtatgtaagagaatcaagatcctt
ctctaatggatggtgtat
gaattccattccatctccctgaatgtttaccgtaatgcaagccgtacact
gtcttgcttactttagttttttatgaggttttaaaaaatatatgagtgtc
aaactttccaacttgatccctcatttcttatagctactgatagtgcactt
cctatgagctttagaaaatatctgtcatttaatggaaaaaccagaaagat
atctaactgtttaattaaaagtacagtgaataggagaaccaactagagaa
tgttgcagtaatgatgagtttctagccatggcaaggtaaccatctttagt
gttttttggcacctcatgtttaggctgaaatgtatgtgtgtttgtgtgtg
tatgtgtgtgcgtgtgtacaaggggttctttgtgtatgtctgtattttaa
aggtcacggtgcaatctataattgttactcaggttctggaaccattttgt
aaaatgggatctttcatcagcctagaatatgacatatagcctatgatgtc
tgtcttcacttctcaagcactaacatcacatatgtgttattgcactaaat
ttcttttacatgactcttggaagttaaactcaggactccatctttgcaag
acaaatatttgagctattcctgaagctctggccttaagtttttaaagaca
ttattttttatgccacagagagttgaattatttttttcattttagtttta
gaatgatcattattaatgcatagtatatgattaacatttctacattgtat
ctagtaactaagatgaataactttattttttctaattatgactttagagg
attttaaaagaaaattctcatgcaagattatgcaagtaaagataatttta
tgcttccctttctcatatgttttgacttgtttcatttatttgattaattg
ctctgcgtgtgaattccagtacagtgttgaatacacatgacagaagctta
catacttgtctggatcttggtacctgtcttaaagaaaatgttttcctagt
atggtgaagaacctctcttgcagtccagctagataaaatccgcaccacga
agaagagagagtgaacaccaagattttcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40225195_40225668
seq2: B6Ng01-109J07.b_51_524 (reverse)

seq1  ATACACCATCCATTAGAGAAGGATCTTGATTCTCTTACATACTTCTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCATCCATTAGAGAAGGATCTTGATTCTCTTACATACTTCTGAAC  50

seq1  CTCTGCACACATACAAGTGCACAATGACTTATGAAATGCATTTGTTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACACATACAAGTGCACAATGACTTATGAAATGCATTTGTTATTG  100

seq1  AGATTTTTAGTTTTACTGTTGCTCTAAGGGCGAAGAGATGTAATCACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTAGTTTTACTGTTGCTCTAAGGGCGAAGAGATGTAATCACACC  150

seq1  CATATCACCATGGACACTGTAATGTGAATTTATGCACAGAAATGCCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACCATGGACACTGTAATGTGAATTTATGCACAGAAATGCCCTCC  200

seq1  CTTCAAGTTCACTGATACAGCCAATGTCACAGATTAGTCTCAAACTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTTCACTGATACAGCCAATGTCACAGATTAGTCTCAAACTCCCA  250

seq1  ACCAGCTACCATGGGCACAGTTACTATACAAGAAATGATTTTCATTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTACCATGGGCACAGTTACTATACAAGAAATGATTTTCATTTCAG  300

seq1  CTCTTCAGTATTGTTGTAAATGAATATAATTTTTAAACTGACCATCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGTATTGTTGTAAATGAATATAATTTTTAAACTGACCATCAGCT  350

seq1  TGTCATCTTGATTTTGATAAACTCTTAAAGAGCAGAGACAATTTTGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTTGATTTTGATAAACTCTTAAAGAGCAGAGACAATTTTGTAAA  400

seq1  TAATGCATCACACACACACACACACACACACACACACACACACACACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATCACACACACACACACACACACACACACACACACACACACATT  450

seq1  CTTGAAAGTGACTACCTGGAATTC  474
      ||||||||||||||||||||||||
seq2  CTTGAAAGTGACTACCTGGAATTC  474

seq1: chr5_40155267_40156345
seq2: B6Ng01-109J07.g_67_1147

seq1  GAATTCCATTCCATCTCCCTGAATGTTTACCGTAATGCAAGCCGTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCATCTCCCTGAATGTTTACCGTAATGCAAGCCGTACACT  50

seq1  GTCTTGCTTACTTTAGTTTTTTATGAGGTTTTAAAAAATATATGAGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTTACTTTAGTTTTTTATGAGGTTTTAAAAAATATATGAGTGTC  100

seq1  AAACTTTCCAACTTGATCCCTCATTTCTTATAGCTACTGATAGTGCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCCAACTTGATCCCTCATTTCTTATAGCTACTGATAGTGCACTT  150

seq1  CCTATGAGCTTTAGAAAATATCTGTCATTTAATGGAAAAACCAGAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAGCTTTAGAAAATATCTGTCATTTAATGGAAAAACCAGAAAGAT  200

seq1  ATCTAACTGTTTAATTAAAAGTACAGTGAATAGGAGAACCAACTAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACTGTTTAATTAAAAGTACAGTGAATAGGAGAACCAACTAGAGAA  250

seq1  TGTTGCAGTAATGATGAGTTTCTAGCCATGGCAAGGTAACCATCTTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCAGTAATGATGAGTTTCTAGCCATGGCAAGGTAACCATCTTTAGT  300

seq1  GTTTTTTGGCACCTCATGTTTAGGCTGAAATGTATGTGTGTTTGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGGCACCTCATGTTTAGGCTGAAATGTATGTGTGTTTGTGTGTG  350

seq1  TATGTGTGTGCGTGTGTACAAGGGGTTCTTTGTGTATGTCTGTATTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGCGTGTGTACAAGGGGTTCTTTGTGTATGTCTGTATTTTAA  400

seq1  AGGTCACGGTGCAATCTATAATTGTTACTCAGGTTCTGGAACCATTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACGGTGCAATCTATAATTGTTACTCAGGTTCTGGAACCATTTTGT  450

seq1  AAAATGGGATCTTTCATCAGCCTAGAATATGACATATAGCCTATGATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGATCTTTCATCAGCCTAGAATATGACATATAGCCTATGATGTC  500

seq1  TGTCTTCACTTCTCAAGCACTAACATCACATATGTGTTATTGCACTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCACTTCTCAAGCACTAACATCACATATGTGTTATTGCACTAAAT  550

seq1  TTCTTTTACATGACTCTTGGAAGTTAAACTCAGGACTCCATCTTTGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTACATGACTCTTGGAAGTTAAACTCAGGACTCCATCTTTGCAAG  600

seq1  ACAAATATTTGAGCTATTCCTGAAGCTCTGGCCTTAAGTTTTTAAAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTTGAGCTATTCCTGAAGCTCTGGCCTTAAGTTTTTAAAGACA  650

seq1  TTATTTTTTATGCCACAGAGAGTTGAATTATTTTTTTCATTTTAGTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTATGCCACAGAGAGTTGAATTATTTTTTTCATTTTAGTTTTA  700

seq1  GAATGATCATTATTAATGCATAGTATATGATTAACATTTCTACATTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATCATTATTAATGCATAGTATATGATTAACATTTCTACATTGTAT  750

seq1  CTAGTAACTAAGATGAATAACTTTATTTTTTCTAATTATGACTTTAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAACTAAGATGAATAACTTTATTTTTTCTAATTATGACTTTAGAGG  800

seq1  ATTTTTAAAAGAAAATTCTCATGCAAGATTATGCAAGTAAAGATAATTTT  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTTAAAAGAAAATTCTCATGCAAGATTATGCAAGTAAAGATAATTTT  849

seq1  ATGCTTCCCTTTCTCATATG-TTTGACTTGTTTCATTTATTTGATTAATT  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGCTTCCCTTTCTCATATGTTTTGACTTGTTTCATTTATTTGATTAATT  899

seq1  GCTCTGCGTGTGAACTCCAGTACAGTGTTGAATACACATGACAGAAGCTT  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTCTGCGTGTGAATTCCAGTACAGTGTTGAATACACATGACAGAAGCTT  949

seq1  ACATACTTGTCTGGATCTTGGTACCTGTCTTAAAGAAAATGTTTTCCTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTGTCTGGATCTTGGTACCTGTCTTAAAGAAAATGTTTTCCTAG  999

seq1  TATGTAGAAGAA-CTCTCTGCAAGTCCAAGCTAGATAAAAT-CGCAGCAC  1047
      ||||  |||||| ||||||   ||||| ||||||||||||| |||| |||
seq2  TATGGTGAAGAACCTCTCTTGCAGTCC-AGCTAGATAAAATCCGCACCAC  1048

seq1  GAAG-AGAGAGAGTGAACACCAAGATTTTCCCC  1079
      |||| ||||||||||||||||||||||||||||
seq2  GAAGAAGAGAGAGTGAACACCAAGATTTTCCCC  1081