BAC Information

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BAC

Clone NameB6Ng01-109K10
Chromosome5 (Build37)
Map Location 35,551,879 - 35,689,377
singlet/doubletdoublet
Overlap geneAdra2c
Upstream geneZfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1
Downstream geneHmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109K10.bB6Ng01-109K10.g
ACCDH916504DH916505
length1,0891,080
definitionDH916504|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K10, 5' end.DH916505|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,551,879 - 35,552,972)(35,688,292 - 35,689,377)
sequence
gaattcaaatactctttttttttcttttcttttcaggctaaggtttactg
ggctctctgcttctgcatgacccatctctctgcttgtaaatggctttgat
ggttgagagacaagctaagctgaaagtgttcaacaaaccctactggaaag
atacaactcactgctcaaagattggaatgtgggaatgtggggctctgggg
gtgcagtgtctacacctcaagttactgttgtgtagcccacactcacagca
ctgtgtcacagtgtccctgtggcacactgacctcacagctgttcccttcc
cttaggatgacatacttagctttgctgcctggcaagcctcacaagacagc
ttgtagtggtgtcaatttgtacgagctaaccctgggtaaccatttatgtt
ttgaatttccctctctaactccagtttctcttctcatccttcctgttgat
ttgggaagattctttatatattcagggtagcaagcctcttgtatatgtgg
cagttattcacataataagttataataaattgtagggtgctttttctctt
ttttactttctctctctctctctctctctctctctctctctctttctttc
tttctttctttctttcacttttttttttttcatttttcgagacagggttt
ctctgtatagccctggctgtcctggaactcactctgtagaccaaggctgg
cctcgaactcagaaatcttcctgcctctgcctcccaagtgctggcattaa
agggatgtgccaccactgcccggctttttactttcttgtcttgtcttttt
gccaccataacttttatcccttttgcattaaactgtcgattcctctgcat
tatttgtaaatatttcagtatgcatttaaaaacagaatgtataatggatt
atatgaacttaagtattgccatatggagctgattgattatcattttgcag
ggtcatggtttgtggtttgccatgaaactctttatccattctgaggtatg
ggtttctatctttttgcatttgaaacctttttttgagcgtaggactttca
gtctggtgggaatgagctttggctcattccggctctctc
gaattcctgttgggcctcacccagcatgtctcaggctgtcaaggacaatt
tatgcagaggactgttacctccatgaggagccccaaggaacctggtgcct
cagtgccaggtgtggtcctgagccagaaggacagtatgtagaaacgggct
ctgggtgttgtgtagtcttctgttcattgtcagcatgtatattggttcct
gagctctgacaatatggctttctctgagctgccccagtaggggcatgggg
ccagaagggaacttggaactgtatacctaattttgttgcagatacagaaa
tggccaaaaaccaagtttgttctctatgtcatctgtgtgctgaggaaggt
tttggaaaggcagggagattacaggggtgtgggaagggagtctgcagtgg
ccttcttctggctgcatccagaattcaggagtggttaacaccattcacga
gagggccatagacagagtaatattctgttcacagagagatttcaaatgac
catcatcgacagccacaggtgagccatgcttaaagcctgggtgcatagga
aggtctctcataagcatctgggatctccatttacagtaaacgacacttct
tagctctggtgtgacacatggctctgttttatcagaggataaacctatcc
aaggcatctcaggagccacccaatgacctcattcgccagagagaggaaga
agaaagggtcctggagacgcctttgagacagagcagcagacactacagag
ggtgagcacacggctaccacgaaggcgtttaggcatggctctctcctgag
aagcccacatccacatagggcacgtgctgtcctttcccagagagcccctc
tcgcctctgtgcttatgattaaaattatgttaaagtctttaatcaacccc
agccctgcctcacactggcttgtcttgaagtctttctggggtaaagttaa
gaatcctgcattgtccgagtggagacctcctgtgagctgctgtgggtgga
acaaggggcttagtctgtacctacactccattgagctcatcaagccagtg
ctgatgccaaagcttgctgccattctgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_35551879_35552972
seq2: B6Ng01-109K10.b_47_1135

seq1  GAATTCAAATACTCTTTTTTTTTCTTTTCTTTTCAGGCTAAGGTTTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATACTCTTTTTTTTTCTTTTCTTTTCAGGCTAAGGTTTACTG  50

seq1  GGCTCTCTGCTTCTGCATGACCCATCTCTCTGCTTGTAAATGGCTTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTGCTTCTGCATGACCCATCTCTCTGCTTGTAAATGGCTTTGAT  100

seq1  GGTTGAGAGACAAGCTAAGCTGAAAGTGTTCAACAAACCCTACTGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGAGACAAGCTAAGCTGAAAGTGTTCAACAAACCCTACTGGAAAG  150

seq1  ATACAACTCACTGCTCAAAGATTGGAATGTGGGAATGTGGGGCTCTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACTCACTGCTCAAAGATTGGAATGTGGGAATGTGGGGCTCTGGGG  200

seq1  GTGCAGTGTCTACACCTCAAGTTACTGTTGTGTAGCCCACACTCACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGTCTACACCTCAAGTTACTGTTGTGTAGCCCACACTCACAGCA  250

seq1  CTGTGTCACAGTGTCCCTGTGGCACACTGACCTCACAGCTGTTCCCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCACAGTGTCCCTGTGGCACACTGACCTCACAGCTGTTCCCTTCC  300

seq1  CTTAGGATGACATACTTAGCTTTGCTGCCTGGCAAGCCTCACAAGACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATGACATACTTAGCTTTGCTGCCTGGCAAGCCTCACAAGACAGC  350

seq1  TTGTAGTGGTGTCAATTTGTACGAGCTAACCCTGGGTAACCATTTATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTGGTGTCAATTTGTACGAGCTAACCCTGGGTAACCATTTATGTT  400

seq1  TTGAATTTCCCTCTCTAACTCCAGTTTCTCTTCTCATCCTTCCTGTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTCCCTCTCTAACTCCAGTTTCTCTTCTCATCCTTCCTGTTGAT  450

seq1  TTGGGAAGATTCTTTATATATTCAGGGTAGCAAGCCTCTTGTATATGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGATTCTTTATATATTCAGGGTAGCAAGCCTCTTGTATATGTGG  500

seq1  CAGTTATTCACATAATAAGTTATAATAAATTGTAGGGTGCTTTTTCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTCACATAATAAGTTATAATAAATTGTAGGGTGCTTTTTCTCTT  550

seq1  TTTTACTT------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTC  594
      ||||||||      ||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTC  600

seq1  TTTCTTTCTTTCTTTCACTTTTTTTTTTTTCATTTTTCGAGACAGGGTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCACTTTTTTTTTTTTCATTTTTCGAGACAGGGTTT  650

seq1  CTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAAGGCTGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAAGGCTGG  700

seq1  CCTCGAACTCAGAAATCTTCCTGCCTCTGCCTCCCAAGTGCTGGCATTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAACTCAGAAATCTTCCTGCCTCTGCCTCCCAAGTGCTGGCATTAA  750

seq1  AGGGATGTGCCACCACTGCCCGGCTTTTTACTTTCTTGTCTTGTCTTTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTGCCACCACTGCCCGGCTTTTTACTTTCTTGTCTTGTCTTTTT  800

seq1  GCCACCATAACTTTTATCCCTTTTGCATTAAACTGTCGATTCCTCTGCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCACCATAACTTTTATCCCTTTTGCATTAAACTGTCGATTCCTCTGCA-  849

seq1  TTATTTGTAAATATTTCAGTATGCATTTAAAAACAAGAATGTATAATGGA  894
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTATTTGTAAATATTTCAGTATGCATTTAAAAAC-AGAATGTATAATGGA  898

seq1  TTATAATGAACTTAAGTTATTGCCATAATGGAGCTGAATTGATTAATCAT  944
      |||| ||||||||||| ||||||||| ||||||||| ||||||| |||||
seq2  TTAT-ATGAACTTAAG-TATTGCCAT-ATGGAGCTG-ATTGATT-ATCAT  943

seq1  TTTGCCAGGGTCCATGGTTTTGTGGTTTGCCATGAAACTC-TTATCCATT  993
      |||| |||||| ||||| |||||||||||||||||||||| |||||||||
seq2  TTTG-CAGGGT-CATGG-TTTGTGGTTTGCCATGAAACTCTTTATCCATT  990

seq1  CTGAGGTTATGGTTTTCTTTATTTCTTTTGCATTTGAAACTTTTTTTTAA  1043
      |||||| ||||| ||||| | |   ||||||||||||||| ||||||| |
seq2  CTGAGG-TATGGGTTTCTATCT---TTTTGCATTTGAAACCTTTTTTTGA  1036

seq1  GTTTA-GACTTTCA-TCTGGTGAGATTGAAGCTTT-GCTCATTCCTGCTC  1090
      |  || |||||||| ||||||| || || |||||| ||||||||| ||||
seq2  GCGTAGGACTTTCAGTCTGGTGGGAATG-AGCTTTGGCTCATTCCGGCTC  1085

seq1  TCTC  1094
      ||||
seq2  TCTC  1089

seq1: chr5_35688292_35689377
seq2: B6Ng01-109K10.g_68_1147 (reverse)

seq1  CTGCAGAATGGCAGCAAGCTTTGGGCATCAGCACTGGCCTGATGAGCCTC  50
      |||||||||||||||||||||| ||||||||||||||| ||||||| |||
seq2  CTGCAGAATGGCAGCAAGCTTT-GGCATCAGCACTGGCTTGATGAG-CTC  48

seq1  AGTGGAGTGTAGGTACAGACTTAGCCCCTTGTTTCCACCCACAGCAGCCT  100
      | ||||||||||||||||||| ||||||||| ||||||||||||||| ||
seq2  AATGGAGTGTAGGTACAGACTAAGCCCCTTG-TTCCACCCACAGCAG-CT  96

seq1  CACA-GAGGTCTCCACTCGGACAATGCAGGATTCTTAACTTTACCCCAGA  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGGTCTCCACTCGGACAATGCAGGATTCTTAACTTTACCCCAGA  146

seq1  AAAGAACTTCAAGACAAGCCAGTGTGAGGCAGGGCTGGGGTTGATTAAAA  199
      ||   ||||||||||||||||||||||||||||||||||||||||| |||
seq2  AA--GACTTCAAGACAAGCCAGTGTGAGGCAGGGCTGGGGTTGATT-AAA  193

seq1  GACTTTAACATAATTTTAATCATAAGCACAGAGGCGAGAGGGGCTCTCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAACATAATTTTAATCATAAGCACAGAGGCGAGAGGGGCTCTCTG  243

seq1  GGAAAGGACAGCACGTGCCCTATGTGGATGTGGGCTTCTCAGGAGAGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGACAGCACGTGCCCTATGTGGATGTGGGCTTCTCAGGAGAGAGC  293

seq1  CATGCCTAAACGCCTTCGTGGTAGCCGTGTGCTCACCCTCTGTAGTGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTAAACGCCTTCGTGGTAGCCGTGTGCTCACCCTCTGTAGTGTCT  343

seq1  GCTGCTCTGTCTCAAAGGCGTCTCCAGGACCCTTTCTTCTTCCTCTCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTGTCTCAAAGGCGTCTCCAGGACCCTTTCTTCTTCCTCTCTCT  393

seq1  GGCGAATGAGGTCATTGGGTGGCTCCTGAGATGCCTTGGATAGGTTTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAATGAGGTCATTGGGTGGCTCCTGAGATGCCTTGGATAGGTTTATC  443

seq1  CTCTGATAAAACAGAGCCATGTGTCACACCAGAGCTAAGAAGTGTCGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATAAAACAGAGCCATGTGTCACACCAGAGCTAAGAAGTGTCGTTT  493

seq1  ACTGTAAATGGAGATCCCAGATGCTTATGAGAGACCTTCCTATGCACCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAATGGAGATCCCAGATGCTTATGAGAGACCTTCCTATGCACCCA  543

seq1  GGCTTTAAGCATGGCTCACCTGTGGCTGTCGATGATGGTCATTTGAAATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAAGCATGGCTCACCTGTGGCTGTCGATGATGGTCATTTGAAATC  593

seq1  TCTCTGTGAACAGAATATTACTCTGTCTATGGCCCTCTCGTGAATGGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAACAGAATATTACTCTGTCTATGGCCCTCTCGTGAATGGTGT  643

seq1  TAACCACTCCTGAATTCTGGATGCAGCCAGAAGAAGGCCACTGCAGACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTCCTGAATTCTGGATGCAGCCAGAAGAAGGCCACTGCAGACTC  693

seq1  CCTTCCCACACCCCTGTAATCTCCCTGCCTTTCCAAAACCTTCCTCAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCACACCCCTGTAATCTCCCTGCCTTTCCAAAACCTTCCTCAGCA  743

seq1  CACAGATGACATAGAGAACAAACTTGGTTTTTGGCCATTTCTGTATCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGACATAGAGAACAAACTTGGTTTTTGGCCATTTCTGTATCTGC  793

seq1  AACAAAATTAGGTATACAGTTCCAAGTTCCCTTCTGGCCCCATGCCCCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATTAGGTATACAGTTCCAAGTTCCCTTCTGGCCCCATGCCCCTA  843

seq1  CTGGGGCAGCTCAGAGAAAGCCATATTGTCAGAGCTCAGGAACCAATATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCAGCTCAGAGAAAGCCATATTGTCAGAGCTCAGGAACCAATATA  893

seq1  CATGCTGACAATGAACAGAAGACTACACAACACCCAGAGCCCGTTTCTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGACAATGAACAGAAGACTACACAACACCCAGAGCCCGTTTCTAC  943

seq1  ATACTGTCCTTCTGGCTCAGGACCACACCTGGCACTGAGGCACCAGGTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTCCTTCTGGCTCAGGACCACACCTGGCACTGAGGCACCAGGTTC  993

seq1  CTTGGGGCTCCTCATGGAGGTAACAGTCCTCTGCATAAATTGTCCTTGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGCTCCTCATGGAGGTAACAGTCCTCTGCATAAATTGTCCTTGAC  1043

seq1  AGCCTGAGACATGCTGGGTGAGGCCCAACAGGAATTC  1086
      |||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGACATGCTGGGTGAGGCCCAACAGGAATTC  1080