BAC Information

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BAC

Clone NameB6Ng01-109L23
Chromosome5 (Build37)
Map Location 148,174,673 - 148,323,054
singlet/doubletdoublet
Overlap geneFlt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Upstream geneWasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952
Downstream geneFlt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109L23.bB6Ng01-109L23.g
ACCDH916569DH916570
length1,1291,069
definitionDH916569|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L23, 5' end.DH916570|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,321,920 - 148,323,054)(148,174,673 - 148,175,744)
sequence
gaattcagccattcgtgtattttataaggcgcgatcatggtgggcaggct
gcagtttagtctgttcaataaaaagaatgcctagagcacacaataagaac
cggtgaattaaacaactaatcaagcaatacgaccagaggtttcttcagag
acaacatacaaatgtcaaccaaccacatgcaaagaaacacagtatcacta
gggacatgaacacagacccacaagaacatactgagcatagcaacaaatgc
tgttagtgaggaagagggaaagcaggtctcattccttctggcagaaatgt
aaaatactgtagtcaccttgaaaaaagagtttggttcttcaaattgttaa
acgttaccatttgtcttggaatcccactcctatgtatatttcccagtcgc
agtaagaacttaggtccacacaaacacttgtatatgaatgcccagagcac
atgatcatcatcactgttcaaactcagaaaaaacctcaaatgtctaccaa
ctgagaaattgctctgtgaaatatggaagttggaggattgtaatggacat
gaacccacactactatggggatcacacaacattaagtgaaagtggccact
tagtaccaaatgtacatgaagggcacagcatggccaagcctatgcagtag
gaaagcagaattacagttctaagggccataactcttaagtcagatcaggg
taagagaaaagcacagactacaaaaggcacacggcttatctacagttcac
ggttacaactgcccaacctagtgaatacaccaaagtcaagtgagccccat
gtacacttaaaggtccagtcttacaataaatatgtaaactaaataccggc
aaaatacttgatccaaatcatcccagcagcccagctgaaggagggagggg
agcaatgaaatacaacacacactaacccatctcatttactaggataaaaa
acaagataggcataaacgagtagactctgggaaagtaagtaattaaattc
tgatgagaaaatttgaatacaggttagtattcatgctatcttgctatcag
atgacaatctacctaaaagaatcttaaaaaatgacctctagttcagcaaa
ggttaacaataatataaaaaaaaaattgg
cccccaaagtaaggggtgaatctccttcagtctctttttcagaagtaaaa
gggctccaggcagctggaaaccagacacaaacacggaaaggcaagcccca
gggagcctcagggtgtgatttgaggaagtaaattgcagaaatgaagcttt
gatggtcgggaagccgagagacttctggcgtgtgccacgaccgcatcggg
gcttctgcagtagttcagctactacacagattaaaaaaaaacaaaaaacc
aacaaaccagcaactctcccgccactcaggtcagctctcaaaacatgatc
tcgatcctctaccatcccaactcagggcaacagaactgcagaatctagtg
gggagctaaggatgccagctcctgggctggagaggtggctccgcggttaa
gagcactgatggctcttccgaaagtcctgagttcaaatcccagcaaccac
atggtggttcaaaaccatccctaatgagatctgatgccctcttctggtgt
gtctgaagacaggtatagtgtacttacatatagtaataagtaaatctttg
gactggagtgagagtgagtggatgccagttcctttggtgtattagcaaat
ttgaaactttccaccattaaagttgaatagagcttgagttacctctcacc
tcaaccagagcctacacagcagagagaaggatcatagaacacggaaaaac
attgttcagcgctgactgctttacctcagcttccttgctgccatgttttt
tattctctgggaaccttcagagaatctcacgccaagcactgggcgccatg
tgtgctgtacgcaagacacacaggcacagctttctccaagaagtcatgtc
cagagtggcagtgagtccgttttctgtttcacacacacaatttcctgtat
gagcacgggacgagctagagagatgacagccttgtccatctttatggagt
tctaaacttcagagctgagatgtccacatctggaggctgctctcagtgac
tggaaaatggaagggacacagacggctctagctggatggaacgtgttctg
gagttcagccttgttaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148321920_148323054
seq2: B6Ng01-109L23.b_47_1175 (reverse)

seq1  CCAATTTTTTTTTTAATAATTATTGTT-ACTTTTGCTGAACTAGA-GTCA  48
      |||||||||||||||   ||||||||| || |||||||||||||| ||||
seq2  CCAATTTTTTTTTTA--TATTATTGTTAACCTTTGCTGAACTAGAGGTCA  48

seq1  TTTTTTAGGTTCTTTTTAGGTAGAATTGTCATCTGAATAGC-AGATAAGC  97
      ||||||| | |  |||||||||| ||||||||||| ||||| |||| |||
seq2  TTTTTTAAGATTCTTTTAGGTAG-ATTGTCATCTG-ATAGCAAGAT-AGC  95

seq1  ATGGATACTAACCTGTATTCAAATTATCTCATCAGAATTTAATTACTTAC  147
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGAATACTAACCTGTATTCAAATTTTCTCATCAGAATTTAATTACTTAC  145

seq1  TTTCCCAGAGTCTACTCGTTTATGCCTATCTTTGTTTTTTATCCCTAGTA  197
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TTTCCCAGAGTCTACTCGTTTATGCCTATC-TTGTTTTTTAT-CCTAGTA  193

seq1  AATGAGATGGGTTTAGTGTGTGTTGTATTTCATTGCTCCCCTCCCTCCTT  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGGG-TTAGTGTGTGTTGTATTTCATTGCTCCCCTCCCTCCTT  242

seq1  CAGCTGGGCTGCTGGGATGATTTGGATCAAGTATTTTTGCCGGTATTTAG  297
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGCTGGGCTGCTGGGATGATTTGGATCAAGTA-TTTTGCCGGTATTTAG  291

seq1  TTTACATATTTATTGTAAGACTGGACCTTTAAGTGTACATGGGGCTCACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATTTATTGTAAGACTGGACCTTTAAGTGTACATGGGGCTCACT  341

seq1  TGACTTTGGTGTATTCACTAGGTTGGGCAGTTGTAACCGTGAACTGTAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGTGTATTCACTAGGTTGGGCAGTTGTAACCGTGAACTGTAGA  391

seq1  TAAGCCGTGTGCCTTTTGTAGTCTGTGCTTTTCTCTTACCCTGATCTGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCGTGTGCCTTTTGTAGTCTGTGCTTTTCTCTTACCCTGATCTGAC  441

seq1  TTAAGAGTTATGGCCCTTAGAACTGTAATTCTGCTTTCCTACTGCATAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTTATGGCCCTTAGAACTGTAATTCTGCTTTCCTACTGCATAGG  491

seq1  CTTGGCCATGCTGTGCCCTTCATGTACATTTGGTACTAAGTGGCCACTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCATGCTGTGCCCTTCATGTACATTTGGTACTAAGTGGCCACTTT  541

seq1  CACTTAATGTTGTGTGATCCCCATAGTAGTGTGGGTTCATGTCCATTACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAATGTTGTGTGATCCCCATAGTAGTGTGGGTTCATGTCCATTACA  591

seq1  ATCCTCCAACTTCCATATTTCACAGAGCAATTTCTCAGTTGGTAGACATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCAACTTCCATATTTCACAGAGCAATTTCTCAGTTGGTAGACATT  641

seq1  TGAGGTTTTTTCTGAGTTTGAACAGTGATGATGATCATGTGCTCTGGGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTTTTCTGAGTTTGAACAGTGATGATGATCATGTGCTCTGGGCA  691

seq1  TTCATATACAAGTGTTTGTGTGGACCTAAGTTCTTACTGCGACTGGGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATACAAGTGTTTGTGTGGACCTAAGTTCTTACTGCGACTGGGAAA  741

seq1  TATACATAGGAGTGGGATTCCAAGACAAATGGTAACGTTTAACAATTTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAGGAGTGGGATTCCAAGACAAATGGTAACGTTTAACAATTTGA  791

seq1  AGAACCAAACTCTTTTTTCAAGGTGACTACAGTATTTTACATTTCTGCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAACTCTTTTTTCAAGGTGACTACAGTATTTTACATTTCTGCCA  841

seq1  GAAGGAATGAGACCTGCTTTCCCTCTTCCTCACTAACAGCATTTGTTGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATGAGACCTGCTTTCCCTCTTCCTCACTAACAGCATTTGTTGCT  891

seq1  ATGCTCAGTATGTTCTTGTGGGTCTGTGTTCATGTCCCTAGTGATACTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAGTATGTTCTTGTGGGTCTGTGTTCATGTCCCTAGTGATACTGT  941

seq1  GTTTCTTTGCATGTGGTTGGTTGACATTTGTATGTTGTCTCTGAAGAAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGCATGTGGTTGGTTGACATTTGTATGTTGTCTCTGAAGAAAC  991

seq1  CTCTGGTCGTATTGCTTGATTAGTTGTTTAATTCACCGGTTCTTATTGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCGTATTGCTTGATTAGTTGTTTAATTCACCGGTTCTTATTGTG  1041

seq1  TGCTCTAGGCATTCTTTTTATTGAACAGACTAAACTGCAGCCTGCCCACC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGGCATTCTTTTTATTGAACAGACTAAACTGCAGCCTGCCCACC  1091

seq1  ATGATCGCGCCTTATAAAATACACGAATGGCTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||
seq2  ATGATCGCGCCTTATAAAATACACGAATGGCTGAATTC  1129

seq1: chr5_148174673_148175744
seq2: B6Ng01-109L23.g_74_1142

seq1  CCCCCAAAGTAAGGGGTGAATCTCCTTCAGTCTCTTTTTCAGAAGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAGTAAGGGGTGAATCTCCTTCAGTCTCTTTTTCAGAAGTAAAA  50

seq1  GGGCTCCAGGCAGCTGGAAACCAGACACAAACACGGAAAGGCAAGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCAGGCAGCTGGAAACCAGACACAAACACGGAAAGGCAAGCCCCA  100

seq1  GGGAGCCTCAGGGTGTGATTTGAGGAAGTAAATTGCAGAAATGAAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTCAGGGTGTGATTTGAGGAAGTAAATTGCAGAAATGAAGCTTT  150

seq1  GATGGTCGGGAAGCCGAGAGACTTCTGGCGTGTGCCACGACCGCATCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCGGGAAGCCGAGAGACTTCTGGCGTGTGCCACGACCGCATCGGG  200

seq1  GCTTCTGCAGTAGTTCAGCTACTACACAGATTAAAAAAAAACAAAAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCAGTAGTTCAGCTACTACACAGATTAAAAAAAAACAAAAAACC  250

seq1  AACAAACCAGCAACTCTCCCGCCACTCAGGTCAGCTCTCAAAACATGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCAGCAACTCTCCCGCCACTCAGGTCAGCTCTCAAAACATGATC  300

seq1  TCGATCCTCTACCATCCCAACTCAGGGCAACAGAACTGCAGAATCTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATCCTCTACCATCCCAACTCAGGGCAACAGAACTGCAGAATCTAGTG  350

seq1  GGGAGCTAAGGATGCCAGCTCCTGGGCTGGAGAGGTGGCTCCGCGGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTAAGGATGCCAGCTCCTGGGCTGGAGAGGTGGCTCCGCGGTTAA  400

seq1  GAGCACTGATGGCTCTTCCGAAAGTCCTGAGTTCAAATCCCAGCAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGATGGCTCTTCCGAAAGTCCTGAGTTCAAATCCCAGCAACCAC  450

seq1  ATGGTGGTTCAAAACCATCCCTAATGAGATCTGATGCCCTCTTCTGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTTCAAAACCATCCCTAATGAGATCTGATGCCCTCTTCTGGTGT  500

seq1  GTCTGAAGACAGGTATAGTGTACTTACATATAGTAATAAGTAAATCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGACAGGTATAGTGTACTTACATATAGTAATAAGTAAATCTTTG  550

seq1  GACTGGAGTGAGAGTGAGTGGATGCCAGTTCCTTTGGTGTATTAGCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGTGAGAGTGAGTGGATGCCAGTTCCTTTGGTGTATTAGCAAAT  600

seq1  TTGAAACTTTCCACCATTAAAGTTGAATAGAGCTTGAGTTACCTCTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTTTCCACCATTAAAGTTGAATAGAGCTTGAGTTACCTCTCACC  650

seq1  TCAACCAGAGCCTACACAGCAGAGAGAAGGATCATAGAACACGGAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAGAGCCTACACAGCAGAGAGAAGGATCATAGAACACGGAAAAAC  700

seq1  ATTGTTCAGCGCTGACTGCTTTACCTCAGGCTTCCTTGCTGCCATGTTTT  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTGTTCAGCGCTGACTGCTTTACCTCA-GCTTCCTTGCTGCCATGTTTT  749

seq1  TTATTCTCTGGGAACCTTCAGAGAATCTCACGCCAAGCACTGGGCGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCTGGGAACCTTCAGAGAATCTCACGCCAAGCACTGGGCGCCAT  799

seq1  GTGTGCTGTACGCAAGACAACACAGGCACAGCTTTCTCCAAGAAGTCATG  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGTGCTGTACGCAAGAC-ACACAGGCACAGCTTTCTCCAAGAAGTCATG  848

seq1  TCCAGGAGTGGCAGTGAGTCCGTTTCCTGGTTCACACACAC-ATTTCCTG  899
      |||| |||||||||||||||||||| ||| ||||||||||| ||||||||
seq2  TCCA-GAGTGGCAGTGAGTCCGTTTTCTGTTTCACACACACAATTTCCTG  897

seq1  TATGAGGCACGGGACGGAGCTAGAGAGATGACAGCC-TGGCCATCTTTAT  948
      ||||| ||||||||| |||||||||||||||||||| || ||||||||||
seq2  TATGA-GCACGGGAC-GAGCTAGAGAGATGACAGCCTTGTCCATCTTTAT  945

seq1  GGAGGTTCTAAAC-TCAGAGCTGAGATGT-CACATCTGGGAAGCTGCTCT  996
      ||| ||||||||| ||||||||||||||| ||||||| ||| ||||||||
seq2  GGA-GTTCTAAACTTCAGAGCTGAGATGTCCACATCT-GGAGGCTGCTCT  993

seq1  CAGGTGACTGG-AAATGAAAGGGACACAGGACGGCTCTAGCTGGGATGGG  1045
      || |||||||| ||||| |||||||||| ||||||||||||| |||||| 
seq2  CA-GTGACTGGAAAATGGAAGGGACACA-GACGGCTCTAGCT-GGATGGA  1040

seq1  ACGTG-TCTGGAGTTCAGGCTTG-TAGGT  1072
      ||||| |||||||||||| |||| |||||
seq2  ACGTGTTCTGGAGTTCAGCCTTGTTAGGT  1069