BAC Information

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BAC

Clone NameB6Ng01-110F05
Chromosome5 (Build37)
Map Location 134,542,964 - 134,677,179
singlet/doubletdoublet
Overlap geneGats, Wbscr16, Gtf2ird2
Upstream geneLOC100039731, LOC666038, LOC100039750
Downstream geneNcf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110F05.bB6Ng01-110F05.g
ACCDH916977DH916978
length1,1641,120
definitionDH916977|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F05, 5' end.DH916978|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,676,003 - 134,677,179)(134,542,964 - 134,544,091)
sequence
gaattctcaagtcaaagccatggcagaagtgctagcagggaacgaggcca
gtcaaaaccagctcagctctccttattattggcaggctaccccgaaaatg
ggcagacagtgccaggagtgtaagtgaggaccccagcctggccaatcacc
agctgggtcacctgagtgagtcactaaagtggcctgtgtggtgtcttcat
ggaaacaggaggactggtgagtggctgggcctccgcatccaatggttccc
agcccaggtccccagcccaggctgaggcgagtctctaacaagcaaacaaa
caaacacccaatgtcctggacatacagaggctttcattattctgtaaaaa
atatggcattaccttttgggttttgttttgttggtggttttgtttttaaa
gataggtagctaaggctggcctgaaataccctgtgtagctggagatgacc
ggcaactcctgatcctcctgcctccacctccaacacccaggaatttcttt
tctcctcctcctcttcgttcttcttattttcaagacagggtttctctatg
tagccctggctgtcctggaactcactctgtagaccaggctggtctcaaac
tcaagagatccgcctgcctctgcctcccaaggcctggggttaagggtgtg
tgccaccatcactgggctccttcttgtttaaaaaacgtttttttatttag
attgtgactttttctttttctaaatgattatttttaagttgtatttttgg
tgctgagggttgaaccgggggggcagggccttacataaacttggcaagta
ctcagccatcaagctcggtccccctcagcccttatgtttgtttgcaatgt
catctcatcatgtagcttacgctggcctggaactcattctatgggcccat
ggaggcctcaaacctgttattctcctgactcagcctccccagcactggga
tgacagcatttggcaccatgctggccagtctaacatttaccagtctttcc
tgttattgatattcaaagtgggctagattgcatgagactcactcggactc
cttttgtattttcattgcatggaagatttgactcagggacttgggagttc
agactgacattccacacagctgagaataccgaaacctggtcaccacgaag
cactaattggctgc
gaattcatttccttgtcttttctggatcctagaagatgcctgcagtcctt
ggcttgaggcttttcctccatcatcagagacagcaggatagcatctccaa
attgtctcctgtctcctcttccccctcctcttctgcctcctcttcctcct
cttcctctcatccttctcttcttcctcttctcctctcttccttctcttct
tcctcctcaattcctccttttcttccacttcttcctcttcttcctcctcc
tcttccttctgttcctcatcttcctcctcctcccttccttctcttcccct
ttttcccctcctcttcctcatcttctccctctgttttcaactcttctttc
tcctttcctcctcttccttctccactttctcctcctcgttctcctcctcc
ccttcctcctcctcttccttccagccttgtgactctttccatcagggcca
aaaggacagcatcttcaagtcatcccccctctctcatcctcctctctcat
cctcctcttcatttcctcctcttcccccgaccccgtctccctcctctcct
gtgttccagtgtctctcccgagtggcttaggtataaacggcacatcctcc
aacactacatagcatcacatttgtcttatcttcctgtcccctcctttcct
ttgagccttcctggataacctggataagatatccattccacaatattcag
tgtaattaaatctacagagttccttctaccatgtaagctcctacccccag
gctctggggatatattgagaacatcttgggttactacattgtgtttgggg
atcagagctactaccttctctcagaaaaacaataggtttgtatgtggagt
gctgtctgtgccccctgaggaccttaacaatcagtggaaggttcctactg
gaaaattcacactgcaattcattggcctaccttcctagctacaaggggca
tttaaccctttctagaaacctctgaagtgagctgtctctgcaaccagagg
ttgtccctgagttattagtaggaccactgccacttagtgtaaagtgttgg
gaacagaggactgtgtgaagtggctggggattccttgcctacacagcagg
cacagaaaagtcaccaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134676003_134677179
seq2: B6Ng01-110F05.b_47_1210 (reverse)

seq1  GCAGCCATTTAGTGCTTCCGTGGTGACAGTGTTCTGGTATTCCTCAGCCT  50
      ||||||| ||||||||| |||||||||   |||  |||||| ||||| ||
seq2  GCAGCCAATTAGTGCTT-CGTGGTGACCAGGTTTCGGTATT-CTCAG-CT  47

seq1  GTGTGGGATGTCCAGTCTGGAACTCCCAAGTCCCTGGATGTCAAATCCCT  100
      |||||| |||| |||||| |||||||||||||||||   |||||||  ||
seq2  GTGTGGAATGT-CAGTCT-GAACTCCCAAGTCCCTG--AGTCAAAT--CT  91

seq1  TCCATGCAATGGAAAATAC-AGAGGAGTTCCGAGTGAGGTCTTAATGCAA  149
      |||||||||| |||||||| | ||||| ||||||||| ||| | ||||||
seq2  TCCATGCAAT-GAAAATACAAAAGGAG-TCCGAGTGA-GTC-TCATGCAA  137

seq1  TCTAGCCCACTTTGAATATCCAATAACAGGAAAGACTGGTAAATGTTAGA  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTAGCCCACTTTGAATAT-CAATAACAGGAAAGACTGGTAAATGTTAGA  186

seq1  CTGGCCAGCATGGTTGCCAAATGCTGTCATCCCAGTGCTGGGGAGGCTGA  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGCATGG-TGCCAAATGCTGTCATCCCAGTGCTGGGGAGGCTGA  235

seq1  GTCAGGAGAATAACAGGTTTGAGGCCTCCATGGG-CCATAGAATGAGTTC  298
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTCAGGAGAATAACAGGTTTGAGGCCTCCATGGGCCCATAGAATGAGTTC  285

seq1  CAGGCCAGCCTAAGCTACATGATGAGATGACATTGCAAACAAACATAAGG  348
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCGTAAGCTACATGATGAGATGACATTGCAAACAAACATAAGG  335

seq1  GCTGAGGGGGACCGAGCTTGATGGCTGAGTACTTGCCAAGTTTATGTAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGGGGACCGAGCTTGATGGCTGAGTACTTGCCAAGTTTATGTAAG  385

seq1  GCCCTGCCCCCCCGGTTCAACCCTCAGCACCAAAAATACAACTTAAAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCCCCCCGGTTCAACCCTCAGCACCAAAAATACAACTTAAAAAT  435

seq1  AATCATTTAGAAAAAGAAAAAGTCACAATCTAAATAAAAAAACGTTTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTAGAAAAAGAAAAAGTCACAATCTAAATAAAAAAACGTTTTTT  485

seq1  AAACAAGAAGGAGCCCAGTGATGGTGGCACACACCCTTAACCCCAGGCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAAGGAGCCCAGTGATGGTGGCACACACCCTTAACCCCAGGCCT  535

seq1  TGGGAGGCAGAGGCAGGCGGATCTCTTGAGTTTGAGACCAGCCTGGTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCAGGCGGATCTCTTGAGTTTGAGACCAGCCTGGTCTA  585

seq1  CAGAGTGAGTTCCAGGACAGCCAGGGCTACATAGAGAAACCCTGTCTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGTTCCAGGACAGCCAGGGCTACATAGAGAAACCCTGTCTTGA  635

seq1  AAATAAGAAGAACGAAGAGGAGGAGGAGAAAAGAAATTCCTGGGTGTTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAGAACGAAGAGGAGGAGGAGAAAAGAAATTCCTGGGTGTTGG  685

seq1  AGGTGGAGGCAGGAGGATCAGGAGTTGCCGGTCATCTCCAGCTACACAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGGCAGGAGGATCAGGAGTTGCCGGTCATCTCCAGCTACACAGG  735

seq1  GTATTTCAGGCCAGCCTTAGCTACCTATCTTTAAAAACAAAACCACCAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCAGGCCAGCCTTAGCTACCTATCTTTAAAAACAAAACCACCAAC  785

seq1  AAAACAAAACCCAAAAGGTAATGCCATATTTTTTACAGAATAATGAAAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACCCAAAAGGTAATGCCATATTTTTTACAGAATAATGAAAGC  835

seq1  CTCTGTATGTCCAGGACATTGGGTGTTTGTTTGTTTGCTTGTTAGAGACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATGTCCAGGACATTGGGTGTTTGTTTGTTTGCTTGTTAGAGACT  885

seq1  CGCCTCAGCCTGGGCTGGGGACCTGGGCTGGGAACCATTGGATGCGGAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCAGCCTGGGCTGGGGACCTGGGCTGGGAACCATTGGATGCGGAGG  935

seq1  CCCAGCCACTCACCAGTCCTCCTGTTTCCATGAAGACACCACACAGGCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCACTCACCAGTCCTCCTGTTTCCATGAAGACACCACACAGGCCA  985

seq1  CTTTAGTGACTCACTCAGGTGACCCAGCTGGTGATTGGCCAGGCTGGGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGACTCACTCAGGTGACCCAGCTGGTGATTGGCCAGGCTGGGGT  1035

seq1  CCTCACTTACACTCCTGGCACTGTCTGCCCATTTTCGGGGTAGCCTGCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTACACTCCTGGCACTGTCTGCCCATTTTCGGGGTAGCCTGCCA  1085

seq1  ATAATAAGGAGAGCTGAGCTGGTTTTGACTGGCCTCGTTCCCTGCTAGCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGGAGAGCTGAGCTGGTTTTGACTGGCCTCGTTCCCTGCTAGCA  1135

seq1  CTTCTGCCATGGCTTTGACTTGAGAATTC  1177
      |||||||||||||||||||||||||||||
seq2  CTTCTGCCATGGCTTTGACTTGAGAATTC  1164

seq1: chr5_134542964_134544091
seq2: B6Ng01-110F05.g_67_1186

seq1  GAATTCATTTCCTTGTCTTTTCTGGATCCTAGAAGATGCCTGCAGTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTTGTCTTTTCTGGATCCTAGAAGATGCCTGCAGTCCTT  50

seq1  GGCTTGAGGCTTTTCCTCCATCATCAGAGACAGCAGGATAGCATCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGGCTTTTCCTCCATCATCAGAGACAGCAGGATAGCATCTCCAA  100

seq1  ATTGTCTCCTGTCTCCTCTTCCCCCTCCTCTTCTGCCTCCTCTTCCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCCTGTCTCCTCTTCCCCCTCCTCTTCTGCCTCCTCTTCCTCCT  150

seq1  CTTCCTCTCATCCTTCTCTTCTTCCTCTTCTCCTCTCTTCCTTCTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCATCCTTCTCTTCTTCCTCTTCTCCTCTCTTCCTTCTCTTCT  200

seq1  TCCTCCTCAATTCCTCCTTTTCTTCCACTTCTTCCTCTTCTTCCTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCAATTCCTCCTTTTCTTCCACTTCTTCCTCTTCTTCCTCCTCC  250

seq1  TCTTCCTTCTGTTCCTCATCTTCCTCCTCCTCCCTTCCTTCTCTTCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTGTTCCTCATCTTCCTCCTCCTCCCTTCCTTCTCTTCCCCT  300

seq1  TTTTCCCCTCCTCTTCCTCATCTTCTCCCTCTGTTTTCAACTCTTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCTCCTCTTCCTCATCTTCTCCCTCTGTTTTCAACTCTTCTTTC  350

seq1  TCCTTTCCTCCTCTTCCTTCTCCACTTTCTCCTCCTCGTTCTCCTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTCCTCTTCCTTCTCCACTTTCTCCTCCTCGTTCTCCTCCTCC  400

seq1  CCTTCCTCCTCCTCTTCCTTCCAGCCTTGTGACTCTTTCCATCAGGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCTCCTCTTCCTTCCAGCCTTGTGACTCTTTCCATCAGGGCCA  450

seq1  AAAGGACAGCATCTTCAAGTCATCCCCCCTCTCTCATCCTCCTCTCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAGCATCTTCAAGTCATCCCCCCTCTCTCATCCTCCTCTCTCAT  500

seq1  CCTCCTCTTCATTTCCTCCTCTTCCCCCGACCCCGTCTCCCTCCTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTCATTTCCTCCTCTTCCCCCGACCCCGTCTCCCTCCTCTCCT  550

seq1  GTGTTCCAGTGTCTCTCCCGAGTGGCTTAGGTATAAACGGCACATCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCAGTGTCTCTCCCGAGTGGCTTAGGTATAAACGGCACATCCTCC  600

seq1  AACACTACATAGCATCACATTTGTCTTATCTTCCTGTCCCCTCCTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTACATAGCATCACATTTGTCTTATCTTCCTGTCCCCTCCTTTCCT  650

seq1  TTGAGCCTTCCTGGATAACCTGGATAAGATATCCATTCCACAATATTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCTTCCTGGATAACCTGGATAAGATATCCATTCCACAATATTCAG  700

seq1  TGTAATTAAATCTACAGAGTTCCTTCTACCATGTAAGCTCCTACCCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTAAATCTACAGAGTTCCTTCTACCATGTAAGCTCCTACCCCCAG  750

seq1  GCTCTGGGGATATATTGAGAACATCTTGGGTTACTACATTGTGTTTGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGGATATATTGAGAACATCTTGGGTTACTACATTGTGTTTGGGG  800

seq1  ATCAGAGCTACTACCTTCTCTCAGAAAAACAATAGGTTTGTATGTGGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGCTACTACCTTCTCTCAGAAAAACAATAGGTTTGTATGTGGAGT  850

seq1  GCTGTCTGTGCCCCCTGAGGACCTTAACAATCAGTGGAAGGTTCCTACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGTGCCCCCTGAGGACCTTAACAATCAGTGGAAGGTTCCTACTG  900

seq1  GAAAATTCACACTGCAATTCATTGGCCTACCTTCCTAGCTACAAGGTGGC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAAATTCACACTGCAATTCATTGGCCTACCTTCCTAGCTACAAGG-GGC  949

seq1  ATTTAACCCTTTCTAGAAACCTCTGAAGTGAGCTGTCTCTGCAACCAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCCTTTCTAGAAACCTCTGAAGTGAGCTGTCTCTGCAACCAGAG  999

seq1  GTTGTCCCTGAGTTATTAGTAGGGAACCACTGCCACCTAGTGTAAAGTGT  1050
      |||||||||||||||||||||||  ||||||||||| |||||||||||||
seq2  GTTGTCCCTGAGTTATTAGTAGG--ACCACTGCCACTTAGTGTAAAGTGT  1047

seq1  GTGAAACAAGAGGAACTGTG-AAAGTGGCTGGGGAAATCCCTGGCTACAC  1099
        | ||| ||||| ||||||  |||||||||||| | ||| || ||||||
seq2  TGGGAAC-AGAGG-ACTGTGTGAAGTGGCTGGGG-ATTCCTTGCCTACAC  1094

seq1  AGCAAGCACAGAGAAGTCACCCCAAAATA  1128
      |||| ||||||| ||||||||   |||||
seq2  AGCAGGCACAGAAAAGTCACC---AAATA  1120