BAC Information

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BAC

Clone NameB6Ng01-110J11
Chromosome5 (Build37)
Map Location 148,588,734 - 148,721,873
singlet/doubletdoublet
Overlap geneLOC100039825, Pomp, Slc46a3
Upstream geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1
Downstream geneC130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110J11.bB6Ng01-110J11.g
ACCDH917169DH917170
length1,1051,109
definitionDH917169|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J11, 5' end.DH917170|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,720,729 - 148,721,873)(148,588,734 - 148,589,873)
sequence
gaattcttccgatctttctcctggccttctgtcctcagctaggactttcc
tcgtggtcctaaaatggctgcaaacattccatattccacagttatgtgcc
ttacagagactatatacagaaatattctacagttcccttttcagcacaga
gcatccaggtaggcagctctgcacatgccctccgcaagggttacagcacc
tacccatggctacacctacgccatcaccaaagtgggagaagagtgattta
catagaccctcgggattagaactgaaaacctgaatatacgaaccaacagg
agctataacagcaaggtgtgagcgaatgtgtacgtggcggggggtaaata
gggacagaggagggaacctgtccttcagcgcctccttctcccaggtttcc
agactgtgcagtttgctggtaattttttttaaactctcttcctggttaat
tagaaggaacggcccgattcttctctaccaaggcaggcatttctagtgta
agataagtgcctatttttatagtgtggttaatgcggaccagaatacccca
tgggcagtgttttgtcgtttgcaggttctgtgttatactttaggagaaaa
ggctacatgtcacaagctactatcagactaccaatccgtcagcaagctta
aacctcatgtgaatcaatcagcaagttatgggtttggtttctctttgggg
tgagtattgaggtttggtctgttgctacgtattgtaacattaaatactgg
tccctaagatctggttgcccaaaacgaggagatcctcctgtgccccaagg
gatgatatgaagccttgctcctaaatgtaaaactattggttaaataaaga
tgccgacagcctatagctgggcagaggagaggtaggcaagcttcagttcc
tggacttggggatctgagcagggatcccgggggaagaggagagagagaga
ggagaaacatcatggtagtgatcatgacttgtgccacgaggacagcagtt
gagtagagcagccaggtgaacataccagtgatatctcagtataacggacc
agacaaatagtaagtgatatctgcacctcgatcttaaggctattaaatca
ggttt
gaattcaggacctctggtagaagtaccatgtatttttaacccctgagccc
tctcttcagccctgaatgggtttattttatctaataattgcactctctgt
gtggaggggaggtcaaggcgtcaggagtgtgaagtgtctgctcacactcc
atccatggtcagaagtgtgaagtgtctgctcacactccatccatggtcag
aagtgtgaagtgtctgctcacactccatccatggtcagaagtatgaagtg
tctgctcacactccatccatggtcagaagtgtgaagtgtccgttcacact
ccatccatggtcagaagtgtgaagtgtctgctcacactccatccatggtc
agaagagagcaacgagtttatgctggtgctgacccatgagaaaatggaaa
ggtagccatggccccccatggttggggtctgtaatggtaacgctaaccag
cggaggaagctggggacactgcatggaggaggtggcctttgacctgtcaa
cagtgagcctgagagcctgaactcaggcttagatgagaatgagcgctcca
tagtgagaggccctctctctctgtgtgtctctctctgtgtgtctctctgt
gtctctgtctctgtctctctctctcccccagcacgaggtggcagggcaga
ggcagaggagacaaggcaggtgctgggaagggccaggagttttttgctct
ggtgtaagacaagagatgtaacccttcaatgttttgttccaccccataca
ccagtcagagggcttataacaggcctcagctccccctacctaatttatgc
aaatgactcctgggtgaagggaaacagaagctaagatgtcttctctggtc
ctgcctctcctggccttctgaaagatgtcaagctcaggcctggccccact
tctttactctccctctctctctctccctctccctctctctctcttctctc
tttcttccctttcccttcccttctcctccacttccctctcttcttccagc
tgtgtggtggacatagtccattgtgatttggaagcctaagctagactagg
tatgaggacgaacgaaccgacctggtggaccagagaaaaggttgtttctg
tgttaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148720729_148721873
seq2: B6Ng01-110J11.b_48_1152 (reverse)

seq1  AAACCTGATATTTATAATAAGCCTTAAAAGTACCAGAGCTGGGCAGATAT  50
      ||||||||    | |||| |||||||| |      |||  | ||||||||
seq2  AAACCTGA----TTTAAT-AGCCTTAAGA----TCGAG--GTGCAGATAT  39

seq1  CAACCTCTAACCTATTTTGTCTGTGTCCCCGTTAATAACCTGAGATATCA  100
      ||    || | ||| |||||||| ||  ||||| |||  |||||||||||
seq2  CA----CTTA-CTA-TTTGTCTG-GT--CCGTT-ATA--CTGAGATATCA  77

seq1  CTTGGTATGTTCCACCTGGGCTGCTCCTACTCCAACTGGCTGGTCCTCGT  150
      | ||||||||| ||||| ||||||| ||||| ||||| ||| ||||||||
seq2  C-TGGTATGTT-CACCT-GGCTGCT-CTACT-CAACT-GCT-GTCCTCGT  120

seq1  GGGCACAAGGTCATGATCCACCTACCCCATGATGTTTTCTCCTCTCTTCT  200
       ||||||| |||||||||   |||  |||||||| ||||||||||| |||
seq2  -GGCACAA-GTCATGATC--ACTA--CCATGATG-TTTCTCCTCTC-TCT  162

seq1  CTCTCCTCTTCCCCCCGGGATCCCTGCCTCAGATCCCCAAGTCCAGGAAC  250
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  CTCTCCTCTT-CCCCCGGGATCCCTG-CTCAGATCCCCAAGTCCAGGAAC  210

seq1  TGAAGCTTGCCTACCTCTCCTCTGCCCAGCTATAGGCTGTCGGCATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTGCCTACCTCTCCTCTGCCCAGCTATAGGCTGTCGGCATCTTT  260

seq1  ATTTAACCAATAGTTTTACATTTAGGAGCAAGGCTTCATATCATCCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCAATAGTTTTACATTTAGGAGCAAGGCTTCATATCATCCCTTG  310

seq1  GGGCACAGGAGGATCTCCTCGTTTTGGGCAACCAGATCTTAGGGACCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGGAGGATCTCCTCGTTTTGGGCAACCAGATCTTAGGGACCAGT  360

seq1  ATTTAATGTTACAATACGTAGCAACAGACCAAACCTCAATACTCACCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGTTACAATACGTAGCAACAGACCAAACCTCAATACTCACCCCA  410

seq1  AAGAGAAACCAAACCCATAACTTGCTGATTGATTCACATGAGGTTTAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACCAAACCCATAACTTGCTGATTGATTCACATGAGGTTTAAGC  460

seq1  TTGCTGACGGATTGGTAGTCTGATAGTAGCTTGTGACATGTAGCCTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACGGATTGGTAGTCTGATAGTAGCTTGTGACATGTAGCCTTTTC  510

seq1  TCCTAAAGTATAACACAGAACCTGCAAACGACAAAACACTGCCCATGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGTATAACACAGAACCTGCAAACGACAAAACACTGCCCATGGGG  560

seq1  TATTCTGGTCCGCATTAACCACACTATAAAAATAGGCACTTATCTTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGGTCCGCATTAACCACACTATAAAAATAGGCACTTATCTTACAC  610

seq1  TAGAAATGCCTGCCTTGGTAGAGAAGAATCGGGCCGTTCCTTCTAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGCCTGCCTTGGTAGAGAAGAATCGGGCCGTTCCTTCTAATTAA  660

seq1  CCAGGAAGAGAGTTTAAAAAAAATTACCAGCAAACTGCACAGTCTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGAGAGTTTAAAAAAAATTACCAGCAAACTGCACAGTCTGGAAA  710

seq1  CCTGGGAGAAGGAGGCGCTGAAGGACAGGTTCCCTCCTCTGTCCCTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGAAGGAGGCGCTGAAGGACAGGTTCCCTCCTCTGTCCCTATTT  760

seq1  ACCCCCCGCCACGTACACATTCGCTCACACCTTGCTGTTATAGCTCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCGCCACGTACACATTCGCTCACACCTTGCTGTTATAGCTCCTGT  810

seq1  TGGTTCGTATATTCAGGTTTTCAGTTCTAATCCCGAGGGTCTATGTAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCGTATATTCAGGTTTTCAGTTCTAATCCCGAGGGTCTATGTAAAT  860

seq1  CACTCTTCTCCCACTTTGGTGATGGCGTAGGTGTAGCCATGGGTAGGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTCTCCCACTTTGGTGATGGCGTAGGTGTAGCCATGGGTAGGTGC  910

seq1  TGTAACCCTTGCGGAGGGCATGTGCAGAGCTGCCTACCTGGATGCTCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCCTTGCGGAGGGCATGTGCAGAGCTGCCTACCTGGATGCTCTGT  960

seq1  GCTGAAAAGGGAACTGTAGAATATTTCTGTATATAGTCTCTGTAAGGCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAAGGGAACTGTAGAATATTTCTGTATATAGTCTCTGTAAGGCAC  1010

seq1  ATAACTGTGGAATATGGAATGTTTGCAGCCATTTTAGGACCACGAGGAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTGGAATATGGAATGTTTGCAGCCATTTTAGGACCACGAGGAAA  1060

seq1  GTCCTAGCTGAGGACAGAAGGCCAGGAGAAAGATCGGAAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGCTGAGGACAGAAGGCCAGGAGAAAGATCGGAAGAATTC  1105

seq1: chr5_148588734_148589873
seq2: B6Ng01-110J11.g_66_1174

seq1  GAATTCAGGACCTCTGGTAGAAGTACCATGTATTTTTAACCCCTGAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGTAGAAGTACCATGTATTTTTAACCCCTGAGCCC  50

seq1  TCTCTTCAGCCCTGAATGGGTTTATTTTATCTAATAATTGCACTCTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAGCCCTGAATGGGTTTATTTTATCTAATAATTGCACTCTCTGT  100

seq1  GTGGAGGGGAGGTCAAGGCGTCAGGAGTGTGAAGTGTCTGCTCACACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGGGAGGTCAAGGCGTCAGGAGTGTGAAGTGTCTGCTCACACTCC  150

seq1  ATCCATGGTCAGAAGTGTGAAGTGTCTGCTCACACTCCATCCATGGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGTCAGAAGTGTGAAGTGTCTGCTCACACTCCATCCATGGTCAG  200

seq1  AAGTGTGAAGTGTCTGCTCACACTCCATCCATGGTCAGAAGTATGAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAAGTGTCTGCTCACACTCCATCCATGGTCAGAAGTATGAAGTG  250

seq1  TCTGCTCACACTCCATCCATGGTCAGAAGTGTGAAGTGTCCGTTCACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCACACTCCATCCATGGTCAGAAGTGTGAAGTGTCCGTTCACACT  300

seq1  CCATCCATGGTCAGAAGTGTGAAGTGTCTGCTCACACTCCATCCATGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATGGTCAGAAGTGTGAAGTGTCTGCTCACACTCCATCCATGGTC  350

seq1  AGAAGAGAGCAACGAGTTTATGCTGGTGCTGACCCATGAGAAAATGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGCAACGAGTTTATGCTGGTGCTGACCCATGAGAAAATGGAAA  400

seq1  GGTAGCCATGGCCCCCCATGGTTGGGGTCTGTAATGGTAACGCTAACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCATGGCCCCCCATGGTTGGGGTCTGTAATGGTAACGCTAACCAG  450

seq1  CGGAGGAAGCTGGGGACACTGCATGGAGGAGGTGGCCTTTGACCTGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGAAGCTGGGGACACTGCATGGAGGAGGTGGCCTTTGACCTGTCAA  500

seq1  CAGTGAGCCTGAGAGCCTGAACTCAGGCTTAGATGAGAATGAGCGCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCCTGAGAGCCTGAACTCAGGCTTAGATGAGAATGAGCGCTCCA  550

seq1  TAGTGAGAGGCCCTCTCTCTCTGTGTGTCTCTCTCTGTGTGTCTCTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGAGGCCCTCTCTCTCTGTGTGTCTCTCTCTGTGTGTCTCTCTGT  600

seq1  GTCTCTGTCTCTGTCTCTCTCTCTCCCCCAGCACGAGGTGGCAGGGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTCTCTGTCTCTCTCTCTCCCCCAGCACGAGGTGGCAGGGCAGA  650

seq1  GGCAGAGGAGACAAGGCAGGTGCTGGGAAGGGCCAGGAGTTTTTTGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGAGACAAGGCAGGTGCTGGGAAGGGCCAGGAGTTTTTTGCTCT  700

seq1  GGTGTAAGACAAGAGATGTAACCCTTCAATGTTTTGTTCCACCCCATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAGACAAGAGATGTAACCCTTCAATGTTTTGTTCCACCCCATACA  750

seq1  CCAGTCAGAGGGCTTATAACAGGCCTCAGGCTCCCCCTACCTAATTTATG  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCAGTCAGAGGGCTTATAACAGGCCTCA-GCTCCCCCTACCTAATTTATG  799

seq1  CAAATGACTCCTGGGTGAAGGGAAACAGAAGCTAAAGATGTCTTCTCTGG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAAATGACTCCTGGGTGAAGGGAAACAGAAGCT-AAGATGTCTTCTCTGG  848

seq1  TCCTGCCTCTCCTGGCCATTCTGAAAGATGTCAAGCTCAGGCCTGGCCCC  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCTCCTGGCC-TTCTGAAAGATGTCAAGCTCAGGCCTGGCCCC  897

seq1  ACTTCTTTACTCTCCCCTCTCCTCTCTCTCCCTCTCCCTCTCTCCTTCCT  950
      ||||||||||||| |||||| |||||||||||||||||||||||    ||
seq2  ACTTCTTTACTCT-CCCTCT-CTCTCTCTCCCTCTCCCTCTCTC---TCT  942

seq1  CTTCTCTCCTTTCTTCCCTTTCCCTTCCCTTCTCCCCTCCCACCTCCCCT  1000
      ||||||| |||||||||||||||||||||||||  |||||   || ||||
seq2  CTTCTCT-CTTTCTTCCCTTTCCCTTCCCTTCT--CCTCC--ACTTCCCT  987

seq1  CTCCTCCCTCCCAGCTGTGGTGTGGACATAAAGTCCCATTGTGATATGGG  1050
      ||| |  || |||||||||  ||||||||  ||| |||||||||| ||| 
seq2  CTCTT--CTTCCAGCTGTGTGGTGGACAT--AGT-CCATTGTGATTTGG-  1031

seq1  AAAGCCTTAAGCTAGACTAGTGTATGAAGGAGCAGACG-ACCGACCTGGT  1099
       ||||| ||||||||||||| ||||| |||| |  ||| |||||||||||
seq2  -AAGCC-TAAGCTAGACTAG-GTATG-AGGA-CGAACGAACCGACCTGGT  1076

seq1  GAGACCCCAGGAGGAAAGAGGTTTGTTTTCTGTGTTAAGGT  1140
      | ||||     ||  || |||||   |||||||||||||||
seq2  G-GACC-----AGAGAAAAGGTT--GTTTCTGTGTTAAGGT  1109