BAC Information

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BAC

Clone NameB6Ng01-110J12
Chromosome5 (Build37)
Map Location 6,307,152 - 6,308,165
singlet/doubletsinglet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830, LOC100042651, 4921511H03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110J12.bB6Ng01-110J12.g
ACCDH917171DH917172
length9981,155
definitionDH917171|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J12, 5' end.DH917172|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaatgacatgctgggcagtggtggcacttgggaggcagaggcaa
gcgggtttctgagttcgaggccagcctggtttacagagtgagttccagga
aatccagggctatacagagaaactttggctcaaaaacaaaaaaaaaaaaa
aaaaaaccaaaaaaacaaaacaaaacaaaaacaaaaaaacaacaaaaaaa
aaacaaacagaaacaaacgcaaggaatacaaatgacagaaaacttatatt
tttgtttaggtaaagataaacaatgaataagctgaattttctccattagc
actcattgctgcaaaaataattttatgaaggattgtatgatcaatcgttg
tgggaaagaaagagattaatgtagattaaaatagtttgagtatgtgatat
ttaagaatgaataatatgagctaatcatatttctatggtgatctattgaa
taccacattcatgaaaatttcacaggaagataccataataaatgtgaaca
gaacataaattttcacaggcattttatacagctatagacttccttgtaac
atagaaacaaaaaatgtactaacctggcaagagtagcttaattggtatgt
ggaggtacatgtttgtatataagtgcatgtgtatgctttttttcttttat
tctatatcttaatatgaaactacattttttcatgtccccatggtggaaaa
ggtaatacaacaatgaatacaaaacacagctcatatatcttatcaacact
gttcatattaaagtaataggagcataacatgcttgctatgagttatgttt
attctgcttatttcaatatatggagaaactaatatatgatgcccaaagct
atccaaatgattacacttaatcttttactattgttagctgattcctatct
cttctacccacacaaacttctctcacatcatactagaaatctacatgctc
tctctctttttttaaattttcattacttcagctacaagctctcatttt
gaattctctgtttatctctgagccccatttttaattgggttttgggggtt
attggtgtttaacttcttgagatctttataaatgttggatattagccctc
tgtcagatgtagggttaatggagatcctttcccaacctgtaggctgccaa
tttttcttattgacagtgttctttgccttgcagtttcatgaggttgaagc
tgccttacagttaaatgagttttttacagtttcatgtggtcccatttatc
agttgttgatctttgagcctgagccattggggttccgatcaagaattttt
ttcctgtaccaatgcatttaagggtatttcccaccttctcttctatgaga
tttagtgtatgcagatttatgttgaggttattgatccacttggacctgag
ttttgtgcagtatttcaaatatggatctattttcattcttctacatgtag
acatctagttagaccagcaccatttattgatgatgctttcattttgctac
tgtatgggttgtcttctttatcaaaaaatcaagatagatgtccaaaggtg
tgtgggtttatttctgtgcctttgatttgattccattaatcaacgtgtct
gtttctgtaccaatgccccatgcagtttctatcactattgctctcttgta
cagtttgagatcagggatagtaattcttcctgaagtttgtttattgttta
ggattggtttggccatcctggttttattagttttccatataaagttgaga
attgctcgttcaagttctattaaaaaaaacaaaacaaaacaaaaaaaaaa
ccctgtgttggaattttgatggcgattgcattgaatctgaggattgcttt
tggtaagatggcaatttcactatgttaatcctactatctatgagatggaa
gatatctcatctctgataccttcttcagtgtctttcttcagcatctgaag
ttctgtttacaatgtttcatttgggtgaatagacttaagcagacatttaa
tattttcatgggtatttgaaggttgctatttcctaatttctttcgtgtgc
cagttaatggttttaaggagacaactgaattctttgattaatttggtcca
actcttgcgaacttggcttaccgctggggagattctgaaaatgtcggggt
cgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6307152_6308165
seq2: B6Ng01-110J12.b_50_1047 (reverse)

seq1  AAAATGGAGAGCTTTGTAGCCTGAAAGTAAATGAAAATTTTAAAAAAAAA  50
      ||||| |||||| |||||| ||| |||| |||||||| |||||||||| |
seq2  AAAAT-GAGAGC-TTGTAG-CTG-AAGT-AATGAAAA-TTTAAAAAAAGA  44

seq1  GAGGAAGAAGAGCATGGTAGATTTCTTAGTAATGATGTGAGAGAAGTTTG  100
      |||     ||||||| ||||||||| |||| |||||||||||||||||||
seq2  GAG-----AGAGCAT-GTAGATTTC-TAGT-ATGATGTGAGAGAAGTTTG  86

seq1  TGTGGGTAGGAAGAGATAGGAATCAGCTAACAATAGTAAAAGATTAAGTG  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTA-GAAGAGATAGGAATCAGCTAACAATAGTAAAAGATTAAGTG  135

seq1  TAATCATTTGGATAGCTTTGGGCATCATATATTAGTTTCTCCATATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAATCATTTGGATAGCTTTGGGCATCATATATTAGTTTCTCCATATA-TT  184

seq1  GAAATAAGCAGAATAAACATAACTCATAGCAAGCATGTTATGCTCCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGCAGAATAAACATAACTCATAGCAAGCATGTTATGCTCCTATT  234

seq1  ACTTTAATATGAACAGTGTTGATAAGATATATGAGCTGTGTTTTGTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATATGAACAGTGTTGATAAGATATATGAGCTGTGTTTTGTATTC  284

seq1  ATTGTTGTATTACCTTTTCCACCATGGGGACATGAAAAAATGTAGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTATTACCTTTTCCACCATGGGGACATGAAAAAATGTAGTTTCA  334

seq1  TATTAAGATATAGAATAAAAGAAAAAAAGCATACACATGCACTTATATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGATATAGAATAAAAGAAAAAAAGCATACACATGCACTTATATAC  384

seq1  AAACATGTACCTCCACATACCAATTAAGCTACTCTTGCCAGGTTAGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTACCTCCACATACCAATTAAGCTACTCTTGCCAGGTTAGTACA  434

seq1  TTTTTTGTTTCTATGTTACAAGGAAGTCTATAGCTGTATAAAATGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTCTATGTTACAAGGAAGTCTATAGCTGTATAAAATGCCTGT  484

seq1  GAAAATTTATGTTCTGTTCACATTTATTATGGTATCTTCCTGTGAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTATGTTCTGTTCACATTTATTATGGTATCTTCCTGTGAAATTT  534

seq1  TCATGAATGTGGTATTCAATAGATCACCATAGAAATATGATTAGCTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATGTGGTATTCAATAGATCACCATAGAAATATGATTAGCTCATA  584

seq1  TTATTCATTCTTAAATATCACATACTCAAACTATTTTAATCTACATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTCTTAAATATCACATACTCAAACTATTTTAATCTACATTAAT  634

seq1  CTCTTTCTTTCCCACAACGATTGATCATACAATCCTTCATAAAATTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTTCCCACAACGATTGATCATACAATCCTTCATAAAATTATTT  684

seq1  TTGCAGCAATGAGTGCTAATGGAGAAAATTCAGCTTATTCATTGTTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCAATGAGTGCTAATGGAGAAAATTCAGCTTATTCATTGTTTATC  734

seq1  TTTACCTAAACAAAAATATAAGTTTTCTGTCATTTGTATTCCTTGCGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTAAACAAAAATATAAGTTTTCTGTCATTTGTATTCCTTGCGTTT  784

seq1  GTTTCTGTTTGTTTTTTTTTTGTTGTTTTTTTGTTTTTGTTTTGTTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTTTGTTTTTTTTTTGTTGTTTTTTTGTTTTTGTTTTGTTTTGT  834

seq1  TTTTTTGGTTTTTTTTTTTTTTTTTTTGTTTTTGAGCCAAAGTTTCTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTTTTTTTTTTTTTTTTTTTGTTTTTGAGCCAAAGTTTCTCTG  884

seq1  TATAGCCCTGGATTTCCTGGAACTCACTCTGTAAACCAGGCTGGCCTCGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCCTGGATTTCCTGGAACTCACTCTGTAAACCAGGCTGGCCTCGA  934

seq1  ACTCAGAAACCCGCTTGCCTCTGCCTCCCAAGTGCCACCACTGCCCAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAACCCGCTTGCCTCTGCCTCCCAAGTGCCACCACTGCCCAGCA  984

seq1  TGTCATTTGAATTC  1014
      ||||||||||||||
seq2  TGTCATTTGAATTC  998