BAC Information

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BAC

Clone NameB6Ng01-111C10
Chromosome5 (Build37)
Map Location 81,791,776 - 81,942,666
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111C10.bB6Ng01-111C10.g
ACCDH917577DH917578
length1,1241,084
definitionDH917577|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C10, 5' end.DH917578|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,791,776 - 81,792,897)(81,941,566 - 81,942,666)
sequence
gaattctgtgtgcttagcttaataatgcagcaagcaacgtactgattgag
acagctgtgtgtttagagcatagcaaaggtcattgctaaagtgtcacagg
ttttgaggttagtaaaatatatatatatatttcatattttcttggatgtg
tagggttcatcaaacatgagatttttatttttctttgacattcttatgta
catatgttgacttatcttcccccatatagtagcccagattccttactgta
aaatttgataacattctctcaaatggaggttcaatggaatactactttaa
aaacatttgccagctaaatagctgggcagtggtggtgcatgcctttaatc
ccagcactcaggaggcagaagcaggcagatctctgagtgcaaggctgcct
tgtctatagagtgacaataagggttacccagaaaaaccctatcttaaaac
aacagagaaacaaacaaaataaattgcccagccgctttcttcattggaat
ttttctactgtgcgttttaggagtaagaaaaaaaatgacacttgaaattg
ctatttggtaaaacactaatgtataattgtttttgcctttgagccccctg
tcttttactaaagagataaagtttaagagattgtttcccatttttagaga
gctacctacttcttaccctagttcactgtttcttatcatctaacttctcc
tatctggctatacttatccatttctcatttatctatcatctttctatcta
tccatctatctatctatcatctatctctctatccatctatctatctatct
atctatctatctatctatctatctatctatctatctatctatctatcatc
tatgtatctttgtatctatgtatctatctttgtatctatgtatctatgta
tctatgtatctatctaactatctatctatctatctatctatctatctatc
tatctatctatctatctatcatatcatttatctacattcatatttcctgt
ctttaattagctgggcacatattcctggagattactcagttgtttttctc
agaatcctcttgaggattcctacatgggccactttactttaaagaaggtt
ctttattaggcattcttggcagaa
gaattcaacattactcagcctggccttgaactcttggcaatcatcttgtc
tcagcctcccatgagccgagtttacaggcatgagccaccatgcccaacaa
aacctaataatagtaaaaatgaaaagcatgaaggattctttttatattca
tcgctatataatattaaaagtcaatagtatgttcccgcagggggaagtat
tcaaaaaaaattgaacttaaagattatttcagcttaatcatgacagtgtt
ttcaagtatttacatttattcaaagatttgaatgattgtatttatgagtt
attaagtaggtttgctgagacacacgtacttctgaagcatccatacttgc
cccaggataggttttatgtatcattctttgtggggtagagttgttcttgt
tcagctccagtagcattctggggagctaacctttttatatgatccgaatg
gagaataaaacactcttgagaagattccacagttaatgtgacaggacaga
tgcaatcttagcagaagctgtatataattcattacacacagtaataacta
tgcgataaaggcaagtatacctcacagagcagcttgagttaggagagaag
ccatgcaaaggacagagtcccttctcatggctccacattcttagagagca
aataattgcaaccaaccttttgaaaatgaaaagaaaatgaatattctttt
ttagatttccccagccagaaaactgaataaaatattaaaattcatattac
tgagaaaaacaacaacaacaaagaaccaaaaaagaaaacccggtagcttt
ctcagaaattacaatagaaaaaaataaaaaaaaaaaaaatcaacttacct
gatctactatcagaggcccgaagtccaaagagtatttcacacggtggtag
ttatccacacatagagcagattgtccctgggattgtaatccacagctgct
atgtactggtaagagtgggaaagggtacatccacaagctatcctgctttg
tcagtgttgtaaatgtagtcaacctattaccggggcctcgtgtcatcatc
ctctattacagaattggaccaccatacaaatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81791776_81792897
seq2: B6Ng01-111C10.b_46_1169

seq1  GAATTCTGTGTGCTTAGCTTAATAATGCAGCAAGCAACGTACTGATTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGCTTAGCTTAATAATGCAGCAAGCAACGTACTGATTGAG  50

seq1  ACAGCTGTGTGTTTAGAGCATAGCAAAGGTCATTGCTAAAGTGTCACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTGTGTTTAGAGCATAGCAAAGGTCATTGCTAAAGTGTCACAGG  100

seq1  TTTTGAGGTTAGTAAAATATATATATATATTTCATATTTTCTTGGATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGTTAGTAAAATATATATATATATTTCATATTTTCTTGGATGTG  150

seq1  TAGGGTTCATCAAACATGAGATTTTTATTTTTCTTTGACATTCTTATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTCATCAAACATGAGATTTTTATTTTTCTTTGACATTCTTATGTA  200

seq1  CATATGTTGACTTATCTTCCCCCATATAGTAGCCCAGATTCCTTACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTGACTTATCTTCCCCCATATAGTAGCCCAGATTCCTTACTGTA  250

seq1  AAATTTGATAACATTCTCTCAAATGGAGGTTCAATGGAATACTACTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATAACATTCTCTCAAATGGAGGTTCAATGGAATACTACTTTAA  300

seq1  AAACATTTGCCAGCTAAATAGCTGGGCAGTGGTGGTGCATGCCTTTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGCCAGCTAAATAGCTGGGCAGTGGTGGTGCATGCCTTTAATC  350

seq1  CCAGCACTCAGGAGGCAGAAGCAGGCAGATCTCTGAGTGCAAGGCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCAGGAGGCAGAAGCAGGCAGATCTCTGAGTGCAAGGCTGCCT  400

seq1  TGTCTATAGAGTGACAATAAGGGTTACCCAGAAAAACCCTATCTTAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATAGAGTGACAATAAGGGTTACCCAGAAAAACCCTATCTTAAAAC  450

seq1  AACAGAGAAACAAACAAAATAAATTGCCCAGCCGCTTTCTTCATTGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAACAAACAAAATAAATTGCCCAGCCGCTTTCTTCATTGGAAT  500

seq1  TTTTCTACTGTGCGTTTTAGGAGTAAGAAAAAAAATGACACTTGAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTGTGCGTTTTAGGAGTAAGAAAAAAAATGACACTTGAAATTG  550

seq1  CTATTTGGTAAAACACTAATGTATAATTGTTTTTGCCTTTGAGCCCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGTAAAACACTAATGTATAATTGTTTTTGCCTTTGAGCCCCCTG  600

seq1  TCTTTTACTAAAGAGATAAAGTTTAAGAGATTGTTTCCCATTTTTAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACTAAAGAGATAAAGTTTAAGAGATTGTTTCCCATTTTTAGAGA  650

seq1  GCTACCTACTTCTTACCCTAGTTCACTGTTTCTTATCATCTAACTTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTACTTCTTACCCTAGTTCACTGTTTCTTATCATCTAACTTCTCC  700

seq1  TATCTGGCTATACTTATCCATTTCTCATTTATCTATCATCTTTCTATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGCTATACTTATCCATTTCTCATTTATCTATCATCTTTCTATCTA  750

seq1  TCCATCTATCTATCTATCATCTATCTCTCTATCCATCTATCTATCTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTATCTATCTATCATCTATCTCTCTATCCATCTATCTATCTATCT  800

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATC  850

seq1  TATGTATCTTTGTATCTATGTATCTATCTTTGTATCTATGTATCTATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCTTTGTATCTATGTATCTATCTTTGTATCTATGTATCTATGTA  900

seq1  TCTATGTATCTATCTAACTATCTATCTATCTATCTATCTATCTATCTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTATCTATCTAACTATCTATCTATCTATCTATCTATCTATCTATC  950

seq1  TATCTATCTATCTATCTATCATTATCATTTATCTACATTCATATTTCCTG  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCA-TATCATTTATCTACATTCATATTTCCTG  999

seq1  TCTTTAAATTAGCTGGGCACATA-TCCTGGAGATTACTCAGTTGTTTTTC  1049
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTTT-AATTAGCTGGGCACATATTCCTGGAGATTACTCAGTTGTTTTTC  1048

seq1  TCAGAAT-CTC-TGAGGATTCCTACAATGGGCCCACTTTACTTTAAAGAA  1097
      ||||||| ||| ||||||||||||| ||||| ||||||||||||||||||
seq2  TCAGAATCCTCTTGAGGATTCCTAC-ATGGG-CCACTTTACTTTAAAGAA  1096

seq1  GGTTC-TTATTAAGCAT--CTGGCAGAA  1122
      ||||| |||||| ||||   ||||||||
seq2  GGTTCTTTATTAGGCATTCTTGGCAGAA  1124

seq1: chr5_81941566_81942666
seq2: B6Ng01-111C10.g_67_1150 (reverse)

seq1  GGGATTCTGTAT-GTGGT-CAAATCTGTATATGAGGATGATGACAACGAG  48
      |||||| ||||| ||||| ||| ||||||   |||||||||||| |||||
seq2  GGGATT-TGTATGGTGGTCCAATTCTGTAATAGAGGATGATGAC-ACGAG  48

seq1  GCCACCGGTAATAAGATTGACTACATTTACAACACTGACCAAAGCAAGGA  98
      ||| |||||||| || |||||||||||||||||||||| |||||| ||||
seq2  GCC-CCGGTAAT-AGGTTGACTACATTTACAACACTGA-CAAAGC-AGGA  94

seq1  TAGCTTGGTGGATGTACCCTTTCCCAACTCTTACCAGTACATAGCAGCTG  148
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGCTT-GTGGATGTACCCTTTCCC-ACTCTTACCAGTACATAGCAGCTG  142

seq1  TGGATTACAATCCCAGGGACAATCTGCTCTATGTGTGGAATAACTACCAC  198
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGATTACAATCCCAGGGACAATCTGCTCTATGTGTGG-ATAACTACCAC  191

seq1  GTTGTGAAATACTCTTTGGACTTCGGGCCTCTGGATAGTAGATCAGGTAA  248
        |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CGTGTGAAATACTCTTTGGACTTCGGGCCTCT-GATAGTAGATCAGGTAA  240

seq1  GTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATTTTCT  298
      | ||||       |||||||||||||| ||||||| | |||||| |||||
seq2  G-TTGA-------TTTTTTTTTTTTTTATTTTTTTCTATTGTAA-TTTCT  281

seq1  GAGAAAGCTACCGGGTTTTCTTTTTTGGTTCTTTGTTGTTGTTGTTTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCTACCGGGTTTTCTTTTTTGGTTCTTTGTTGTTGTTGTTTTTC  331

seq1  TCAGTAATATGAATTTTAATATTTTATTCAGTTTTCTGGCTGGGGAAATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATATGAATTTTAATATTTTATTCAGTTTTCTGGCTGGGGAAATC  381

seq1  TAAAAAAGAATATTCATTTTCTTTTCATTTTCAAAAGGTTGGTTGCAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAATATTCATTTTCTTTTCATTTTCAAAAGGTTGGTTGCAATT  431

seq1  ATTTGCTCTCTAAGAATGTGGAGCCATGAGAAGGGACTCTGTCCTTTGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCTCTAAGAATGTGGAGCCATGAGAAGGGACTCTGTCCTTTGCA  481

seq1  TGGCTTCTCTCCTAACTCAAGCTGCTCTGTGAGGTATACTTGCCTTTATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTCTCCTAACTCAAGCTGCTCTGTGAGGTATACTTGCCTTTATC  531

seq1  GCATAGTTATTACTGTGTGTAATGAATTATATACAGCTTCTGCTAAGATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTTATTACTGTGTGTAATGAATTATATACAGCTTCTGCTAAGATT  581

seq1  GCATCTGTCCTGTCACATTAACTGTGGAATCTTCTCAAGAGTGTTTTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTCCTGTCACATTAACTGTGGAATCTTCTCAAGAGTGTTTTATT  631

seq1  CTCCATTCGGATCATATAAAAAGGTTAGCTCCCCAGAATGCTACTGGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCGGATCATATAAAAAGGTTAGCTCCCCAGAATGCTACTGGAGC  681

seq1  TGAACAAGAACAACTCTACCCCACAAAGAATGATACATAAAACCTATCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGAACAACTCTACCCCACAAAGAATGATACATAAAACCTATCCT  731

seq1  GGGGCAAGTATGGATGCTTCAGAAGTACGTGTGTCTCAGCAAACCTACTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGTATGGATGCTTCAGAAGTACGTGTGTCTCAGCAAACCTACTT  781

seq1  AATAACTCATAAATACAATCATTCAAATCTTTGAATAAATGTAAATACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCATAAATACAATCATTCAAATCTTTGAATAAATGTAAATACTT  831

seq1  GAAAACACTGTCATGATTAAGCTGAAATAATCTTTAAGTTCAATTTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACTGTCATGATTAAGCTGAAATAATCTTTAAGTTCAATTTTTTT  881

seq1  TGAATACTTCCCCCTGCGGGAACATACTATTGACTTTTAATATTATATAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTTCCCCCTGCGGGAACATACTATTGACTTTTAATATTATATAG  931

seq1  CGATGAATATAAAAAGAATCCTTCATGCTTTTCATTTTTACTATTATTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAATATAAAAAGAATCCTTCATGCTTTTCATTTTTACTATTATTAG  981

seq1  GTTTTGTTGGGCATGGTGGCTCATGCCTGTAAACTCGGCTCATGGGAGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTGGGCATGGTGGCTCATGCCTGTAAACTCGGCTCATGGGAGGC  1031

seq1  TGAGACAAGATGATTGCCAAGAGTTCAAGGCCAGGCTGAGTAATGTTGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAGATGATTGCCAAGAGTTCAAGGCCAGGCTGAGTAATGTTGAA  1081

seq1  TTC  1101
      |||
seq2  TTC  1084