BAC Information

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BAC

Clone NameB6Ng01-111J02
Chromosome5 (Build37)
Map Location 15,417,428 - 15,543,655
singlet/doubletdoublet
Overlap geneLOC100041781, Cacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik
Downstream geneLOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111J02.bB6Ng01-111J02.g
ACCDH917878DH917879
length1,1741,163
definitionDH917878|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J02, 5' end.DH917879|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,417,428 - 15,418,629)(15,542,472 - 15,543,655)
sequence
gaattctctggagaatgacaggaaggcaatgtctagacagggagaccaag
ggtaaggggggagcagccagaagagtagatatctataagccttttatgtg
gaatacatggagtgaagaatttagagtgtcatcgggatgtcacaaaggac
cttccctatctcttctgagtagaagctttatgagaggaatcaaaacaaga
tggaatccgcaagaatccagagaatagactctattgttgtcaaaatatct
tcttccaaaatttcagttttgaatttgagcaagcatattcaatggcccac
ccaacatttctactggatgacaaattaaaaagtcaaaattaacctatttc
tccaaactatcacactgacatcagacatattaatctcttgcttacttcaa
gcctgttcctgcaatttcatgtatatgtttataatataattgcatcattt
ccccatttcagtgctgtggattcaaccatggcattcctgatacatgctaa
ttaaatgttctagtgctcttcctctgagcagtccagtattcttgcatttt
ctatcttaataaatattcacttcactcacttgttcagctcaaagtctttg
ctatcaatctaactaagtcttagcctagtagtttgtcccagcaaatttca
atgtctttaaatttaaaatatactcaaaatgattgttatccatcttttgc
tgttactgctgtgaaaaccattcttgtctttgcttggatgactgtacagt
ccttatctgttctccataattttccatttggcacatacatatgtattaat
aggttttacaagaattgtattgtgtccttttgcagcttaagctgacagtg
actgaacaatgcactcatagaattatctgagactctcgatctcatttcta
agtgtgtctctgaggtatcaccatttatttgacttgctcattcttttaaa
tacagtgattctctctgtccaacagtacagatgcgtaaagcccagaatct
catgaccagtttgcattttatgtctgtctctcacttcactatatttatgg
tcttatcagagctttcaacattcagctctttgtacgacagctgtcagtag
tttccttactatgccacaagcctgaaccttggtgtttcaaaagaatgctg
ctaactaggctacatgtttcaagt
gaattcacatcttaacttctcgttccataaacgatttggtgaaacctata
atctgtttttctttgacacaatgccctgtgaaaaattaatgagttgatct
tatgagaggtaaactggtgaaggggcacataaggaaacaccaagatctca
gggggatgcacagctgggtttgagtggttttctaactcaataatgacgca
gagttacagattgctctgaaatgcccctgtctcatctcaaaggaggagac
aagtggactgagtctacagtggagaaaccatgttaggactgtcaaaggag
cctagggacagctgtggaccaaaacgctcgctactcagtaagtactagtt
gttacctcccttcctttcattaaaatgaactttccctagaattatttccc
taaaactcacattaaatctatagaaaaatttaatcaatatagtttcaaga
gaataggagatacacacgcacacacatatatatataactaaatactccag
aaaggcactggtcccattgaacattacaatatatgtgcaaaacacacaca
tatacacacaagagaaagagagagagagaaagagagagagagagtcaaag
atctcttagacaaacagaacaccagaggaagagtaacttctgaaaatctc
ttcttgcatgatgaaaataaacctgcttaaattatcttttccttagcctg
tttacgaactgtatttgactaggataacatctcagaggtttcataactta
cactcactatataaaaatgtttcactcccaaaaagtttcactaattcaat
taaaatatgcaatcttggcttaagatcagaagccaaaactgatctaaatt
ccctgacggtaggcacagtggtcctgaagtcctaggcactttggaaacag
agcgggagaattacaacagtctgggagtcagagccaccttaaaagatggt
gagcttccatctctcacatcgtaaacagcaaatgaatattcttttaatac
tgatagcactcagtgctgttttcagagagaagcatagacagaagtgcggc
gacgtcattcagatcaccctcagaatgtcttcccagcctcactctgaggt
gacctccagctcatggagagaagcttcagcactgtcatggaaaactcggc
atgtaggtttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15417428_15418629
seq2: B6Ng01-111J02.b_48_1221

seq1  GAATTCTCTGGAGAATGACAGGAAGGCAATGTCTAGACAGGGAGACCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAGAATGACAGGAAGGCAATGTCTAGACAGGGAGACCAAG  50

seq1  GGTAAGGGGGGAGCAGCCAGAAGAGTAGATATCTATAAGCCTTTTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGGGGGAGCAGCCAGAAGAGTAGATATCTATAAGCCTTTTATGTG  100

seq1  GAATACATGGAGTGAAGAATTTAGAGTGTCATCGGGATGTCACAAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATGGAGTGAAGAATTTAGAGTGTCATCGGGATGTCACAAAGGAC  150

seq1  CTTCCCTATCTCTTCTGAGTAGAAGCTTTATGAGAGGAATCAAAACAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTATCTCTTCTGAGTAGAAGCTTTATGAGAGGAATCAAAACAAGA  200

seq1  TGGAATCCGCAAGAATCCAGAGAATAGACTCTATTGTTGTCAAAATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCGCAAGAATCCAGAGAATAGACTCTATTGTTGTCAAAATATCT  250

seq1  TCTTCCAAAATTTCAGTTTTGAATTTGAGCAAGCATATTCAATGGCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAAATTTCAGTTTTGAATTTGAGCAAGCATATTCAATGGCCCAC  300

seq1  CCAACATTTCTACTGGATGACAAATTAAAAAGTCAAAATTAACCTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATTTCTACTGGATGACAAATTAAAAAGTCAAAATTAACCTATTTC  350

seq1  TCCAAACTATCACACTGACATCAGACATATTAATCTCTTGCTTACTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTATCACACTGACATCAGACATATTAATCTCTTGCTTACTTCAA  400

seq1  GCCTGTTCCTGCAATTTCATGTATATGTTTATAATATAATTGCATCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTCCTGCAATTTCATGTATATGTTTATAATATAATTGCATCATTT  450

seq1  CCCCATTTCAGTGCTGTGGATTCAACCATGGCATTCCTGATACATGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTCAGTGCTGTGGATTCAACCATGGCATTCCTGATACATGCTAA  500

seq1  TTAAATGTTCTAGTGCTCTTCCTCTGAGCAGTCCAGTATTCTTGCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTCTAGTGCTCTTCCTCTGAGCAGTCCAGTATTCTTGCATTTT  550

seq1  CTATCTTAATAAATATTCACTTCACTCACTTGTTCAGCTCAAAGTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTAATAAATATTCACTTCACTCACTTGTTCAGCTCAAAGTCTTTG  600

seq1  CTATCAATCTAACTAAGTCTTAGCCTAGTAGTTTGTCCCAGCAAATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAATCTAACTAAGTCTTAGCCTAGTAGTTTGTCCCAGCAAATTTCA  650

seq1  ATGTCTTTAAATTTAAAATATACTCAAAATGATTGTTATCCATCTTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTAAATTTAAAATATACTCAAAATGATTGTTATCCATCTTTTGC  700

seq1  TGTTACTGCTGTGAAAACCATTCTTGTCTTTGCTTGGATGACTGTACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGCTGTGAAAACCATTCTTGTCTTTGCTTGGATGACTGTACAGT  750

seq1  CCTTATCTGTTCTCCATAATTTTCCATTTGGCACATACATATGTATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTGTTCTCCATAATTTTCCATTTGGCACATACATATGTATTAAT  800

seq1  AGGTTTTACAAGAATTGTATTGTGTCCTTTTGCAGCTTAAAGCTGACAGT  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGTTTTACAAGAATTGTATTGTGTCCTTTTGCAGCTT-AAGCTGACAGT  849

seq1  GACTGAACAATGCACTCATAGAATTATCTGAGACTCTCGATCTCATTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACAATGCACTCATAGAATTATCTGAGACTCTCGATCTCATTTCT  899

seq1  AAGTGTGTCTCTGAGGTATTCACCATTTATTTGACTTGCTCATTCTTTTA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGTGTGTCTCTGAGGTA-TCACCATTTATTTGACTTGCTCATTCTTTTA  948

seq1  AAATTACAGTGATTCTTCTTCTGTCCAAACAAGTACAGGATGCGTTAAAG  1000
      ||  ||||||||||||   |||||||||   |||||| |||||| |||||
seq2  AA--TACAGTGATTCT--CTCTGTCCAA--CAGTACA-GATGCG-TAAAG  990

seq1  CCCAAGAATTCCTCCAATGGACCAGTTTTGCATTTTATGTCTGTCTCCTT  1050
      ||| |||||  |||  || |||||| |||||||||||||||||||||  |
seq2  CCC-AGAAT--CTC--AT-GACCAG-TTTGCATTTTATGTCTGTCTC--T  1031

seq1  CACTTTCACTATA-TTATGGTCTTTAATTCAAGAGCTTTCCACCATCCAG  1099
      ||| ||||||||| ||||||||||  ||   |||||||| || ||| |||
seq2  CAC-TTCACTATATTTATGGTCTT--AT--CAGAGCTTT-CAACATTCAG  1075

seq1  CTC-TTGTACGACAGCTGTCAGTAGTTATCTTTACTATCCCAC-AGCCTG  1147
      ||| ||||||||||||||||||||||| || ||||||| |||| ||||||
seq2  CTCTTTGTACGACAGCTGTCAGTAGTT-TCCTTACTATGCCACAAGCCTG  1124

seq1  ACCTTTGGTGTTTCAAAAAAGATAGCTGCTAAACTCAGGCTACCATGTAT  1197
      | | ||||||||||  ||||||  |||||| |||| |||||| ||||| |
seq2  AACCTTGGTGTTTC--AAAAGAATGCTGCT-AACT-AGGCTA-CATGTTT  1169

seq1  CAAGT  1202
      |||||
seq2  CAAGT  1174

seq1: chr5_15542472_15543655
seq2: B6Ng01-111J02.g_65_1227 (reverse)

seq1  AAAAAACCTACAATGGCCAGATTTCTCACAGTGACAGTGCTGAAACGTCT  50
      ||||||||||| ||| | || ||||   || ||||||||||||| | |||
seq2  AAAAAACCTAC-ATGCCGAGTTTTC---CA-TGACAGTGCTGAAGCTTCT  45

seq1  CTCCATGAGCTGGAAAGTCAACTCAGGATGA-GCTGGGAAGACATTCTGA  99
      ||||||||||||| | |||| |||||  ||| ||||||||||||||||||
seq2  CTCCATGAGCTGG-AGGTCACCTCAGAGTGAGGCTGGGAAGACATTCTGA  94

seq1  GGGTGAATCTGAATGAACGTCCGCCGCACTTCCTGTCTATTGCTTCTCTC  149
      ||||| ||||||||| |||| |||||||||| ||||||| ||||||||||
seq2  GGGTG-ATCTGAATG-ACGT-CGCCGCACTT-CTGTCTA-TGCTTCTCTC  139

seq1  TTGAAAACAGCACTGAGGTGGCTATCAGTTATTAAAAGAATATTCATTTG  199
       ||||||||||||||||   |||||||| |||||||||||||||||||||
seq2  -TGAAAACAGCACTGAG--TGCTATCAG-TATTAAAAGAATATTCATTTG  185

seq1  CTTGTTTACGATGTTGAGAGATGGAAGCTCACCATTCTTTTAAGGTGGCT  249
      | ||||||||||| |||||||||||||||||||| |||||||||||||| 
seq2  C-TGTTTACGATG-TGAGAGATGGAAGCTCACCA-TCTTTTAAGGTGGC-  231

seq1  TCTGAACTCCCAGACTTGTGTAATTCTCCCGCTTCTGTTTCCAAAGTGCC  299
      |||| |||||||||||  |||||||||||||| |||||||||||||||||
seq2  TCTG-ACTCCCAGACTGTTGTAATTCTCCCGC-TCTGTTTCCAAAGTGCC  279

seq1  TAGGACTTCAGGACCACTGTGCCTACCGTCAGGGAATTTTAGATCAGTTT  349
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGGACTTCAGGACCACTGTGCCTACCGTCAGGGAA-TTTAGATCAGTTT  328

seq1  TGGCTTCTGATCTTAAGCCAAGATTGCATATTTTAATTGAATTAGTGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGATCTTAAGCCAAGATTGCATATTTTAATTGAATTAGTGAAA  378

seq1  CTTTTTGGGAGTGAAACATTTTTATATAGTGAGTGTAAGTTATGAAACCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGGAGTGAAACATTTTTATATAGTGAGTGTAAGTTATGAAACCT  428

seq1  CTGAGATGTTATCCTAGTCAAATACAGTTCGTAAACAGGCTAAGGAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGTTATCCTAGTCAAATACAGTTCGTAAACAGGCTAAGGAAAAG  478

seq1  ATAATTTAAGCAGGTTTATTTTCATCATGCAAGAAGAGATTTTCAGAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAAGCAGGTTTATTTTCATCATGCAAGAAGAGATTTTCAGAAGT  528

seq1  TACTCTTCCTCTGGTGTTCTGTTTGTCTAAGAGATCTTTGACTCTCTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCCTCTGGTGTTCTGTTTGTCTAAGAGATCTTTGACTCTCTCTC  578

seq1  TCTCTTTCTCTCTCTCTCTTTCTCTTGTGTGTATATGTGTGTGTTTTGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCTCTCTCTCTTTCTCTTGTGTGTATATGTGTGTGTTTTGCA  628

seq1  CATATATTGTAATGTTCAATGGGACCAGTGCCTTTCTGGAGTATTTAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTGTAATGTTCAATGGGACCAGTGCCTTTCTGGAGTATTTAGTT  678

seq1  ATATATATATGTGTGTGCGTGTGTATCTCCTATTCTCTTGAAACTATATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATGTGTGTGCGTGTGTATCTCCTATTCTCTTGAAACTATATT  728

seq1  GATTAAATTTTTCTATAGATTTAATGTGAGTTTTAGGGAAATAATTCTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATTTTTCTATAGATTTAATGTGAGTTTTAGGGAAATAATTCTAG  778

seq1  GGAAAGTTCATTTTAATGAAAGGAAGGGAGGTAACAACTAGTACTTACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTCATTTTAATGAAAGGAAGGGAGGTAACAACTAGTACTTACTG  828

seq1  AGTAGCGAGCGTTTTGGTCCACAGCTGTCCCTAGGCTCCTTTGACAGTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCGAGCGTTTTGGTCCACAGCTGTCCCTAGGCTCCTTTGACAGTCC  878

seq1  TAACATGGTTTCTCCACTGTAGACTCAGTCCACTTGTCTCCTCCTTTGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGTTTCTCCACTGTAGACTCAGTCCACTTGTCTCCTCCTTTGAG  928

seq1  ATGAGACAGGGGCATTTCAGAGCAATCTGTAACTCTGCGTCATTATTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACAGGGGCATTTCAGAGCAATCTGTAACTCTGCGTCATTATTGAG  978

seq1  TTAGAAAACCACTCAAACCCAGCTGTGCATCCCCCTGAGATCTTGGTGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAACCACTCAAACCCAGCTGTGCATCCCCCTGAGATCTTGGTGTT  1028

seq1  TCCTTATGTGCCCCTTCACCAGTTTACCTCTCATAAGATCAACTCATTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGTGCCCCTTCACCAGTTTACCTCTCATAAGATCAACTCATTAA  1078

seq1  TTTTTCACAGGGCATTGTGTCAAAGAAAAACAGATTATAGGTTTCACCAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACAGGGCATTGTGTCAAAGAAAAACAGATTATAGGTTTCACCAA  1128

seq1  ATCGTTTATGGAACGAGAAGTTAAGATGTGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  ATCGTTTATGGAACGAGAAGTTAAGATGTGAATTC  1163