BAC Information

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BAC

Clone NameB6Ng01-111N03
Chromosome5 (Build37)
Map Location 58,294,823 - 58,462,828
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111N03.bB6Ng01-111N03.g
ACCDH918060DH918061
length1,1081,109
definitionDH918060|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N03, 5' end.DH918061|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,461,695 - 58,462,828)(58,294,823 - 58,295,963)
sequence
gaattctgtaacaatacaacctgcaaaaactatttttaaaggcactattg
tgactgtgactattggcatatatagacgttgagaaaataataaaactcat
taacagtttgtttgaaaaatttataatgattttgttagcacaggggcaca
aacactgatttagatgtgggactgggataaaaagcttcagaacaagcaat
caattttggacagtaaaactctttatgttaatggcttctttatatttcca
gaacataagctgaaagaactttctatttattaagattttcctttaagagt
ccttggaatgaaaaaataaaatttaaagatatttttcttttcatacttac
aggctacaaagaacaacagaataaaatatgagtaaaatcatcatgttttt
aaatagacctactgagagagggttatcatgtaatagcctgactgtagctt
agccagtgaaaaatgatatgtgctaagggagtttgaaacataaacttgct
gatcagtgtgcctcaaagctaaaccctcagaaatggtgacaacacagaca
aacgtgacacagctatgaaacttcagattacatcagacacatcccgtgac
ttgtttcattcagataagatacatgtcaaataacatatgcatatcacttg
accttaaggacactgtagagatataaatagtcctatgagataatttccat
tgccccaagacctggtattgtgtctccataaagtctgtcagagcttgctg
gagtatttcacattgctatagatttaaagatgcttaaactctgcctgtgg
aatatatggacataaattaaagaagcagcagatgaagcgatttttaaaat
aacataacgtacagcacagtggtggcatggcagtaagcagcgctgacttc
aaagtgatgaaaagaaagaacgagaagggagaacggggagagaaaacaga
aaataattcagctatacacatgtatgacaatcaactctcactgaatcagt
gcatcaatagatgcagtacctgatatctgtatatttaacaaacacatatc
tagaacaagagatcgatcttctgtgtgttataacatatttcattgaagaa
ttacagac
gaattctcatgcattgagcatgaaaggaaggcttcctggggcctatggca
tctgcaagtgaaggtcttgaatgttctcttgaactacaggctgtcctgtg
gatctaatagattacaaaccactgcaggggataaagggaaggttcaaatg
tcaaatcatggataagaggagtttgttagagaaggtgcagaaattacaaa
ttagcccaggttttttattttttaactaaaatttcatataatatattctg
attataggttgccaaaacctactcccagactctcccaatccatccaactc
cgtgccctccctctctctgtcttgggaaaacatcaatttaaaatcataca
aaacaaaataaaaaacaaagtacaagaaacacacacacacaaatgctaca
cacatgtgtgagcaaacacacacacacacacacacacacacacacacaca
cacacacacaaacaccccaagccccataaagacaaaaataaaaaatcata
ataaacaagcaaaataccaggaatataggaatataaaacctgcctccaaa
agcaatatacaaaaagaatcgataaagaatgccactgaattcgtttcaca
ctggacaaggactttttttgtacttagctgtgatgcgaataaatttggca
aagaggagctcgtggtaatccacatctctcaaaatatacacaccaaagat
caatgaatgttatcctgcaacatcgtttggatgtacacattttattttat
gtatttttgtgttttactcacattcatgtatgtgtagtatgctcctggca
gctctaaatgtcagaagagggcatcagatgcaatgggattggacttttgg
atgggtttgtgccattctggctgtgctggtatcccaagcaagatcttttg
agagagtatagtgctctcattgctgaactatctctgagcccaggtactta
cactttaggcaagaaatgaaacaaaagataacagcacttatgtaaacatg
atgatgtgcactatctgtttgtataagtatagtctaaggagcatgatctt
tgtcattaacgcgttgcctactagttcttcctagaactaggactccagct
aggtgttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58461695_58462828
seq2: B6Ng01-111N03.b_48_1155 (reverse)

seq1  GTCTGTAATATCTTCCAATGAAAATATG-TATAACACACAGAAGAATCTG  49
      ||||||||| |||| ||||| ||||||| ||||||||||||||| ||| |
seq2  GTCTGTAAT-TCTT-CAATG-AAATATGTTATAACACACAGAAG-ATC-G  45

seq1  ATTCTCTTTGTCTAGAATATGTGTTTGTTTAAAATAATTACAGATATCAG  99
      | ||||||  ||||| |||||||||||||  |||||  ||||||||||||
seq2  A-TCTCTTGTTCTAG-ATATGTGTTTGTT--AAATA--TACAGATATCAG  89

seq1  GGTTACTGCATCTTATTGGATGCACTGAATTCAGTGAGGAAGTTGATTTG  149
      |  ||||||||| |||| ||||||||| ||||||||||  |||||| |||
seq2  G--TACTGCATC-TATT-GATGCACTG-ATTCAGTGAG--AGTTGA-TTG  131

seq1  TCAATACATGTGTTATAGCTTGAATTTATTTTTCTGTTTTCTCCTCCCCG  199
      || ||||||||| |||||| ||||||   ||||||||||||| |||||||
seq2  TC-ATACATGTG-TATAGC-TGAATT--ATTTTCTGTTTTCT-CTCCCCG  175

seq1  TTCTTCCCTTCTTCCTTCTTTCTTTTCATCACTTTGAAGTCAGCGCTGCT  249
      ||| ||||||| || |||||||||||||||||||||||||||||||||||
seq2  TTC-TCCCTTC-TCGTTCTTTCTTTTCATCACTTTGAAGTCAGCGCTGCT  223

seq1  TACTGCCATGCCACCACTGTGCTGTACCTTATGTTATTTTAAAAATCGCT  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACTGCCATGCCACCACTGTGCTGTACGTTATGTTATTTTAAAAATCGCT  273

seq1  TCATCTGCTGCTTCTTTAATTTATGTCCATATATTCCACAGGCAGAGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCTGCTTCTTTAATTTATGTCCATATATTCCACAGGCAGAGTTT  323

seq1  AAGCATCTTTAAATCTATAGCAATGTGAAATACTCCAGCAAGCTCTGACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTTAAATCTATAGCAATGTGAAATACTCCAGCAAGCTCTGACA  373

seq1  GACTTTATGGAGACACAATACCAGGTCTTGGGGCAATGGAAATTATCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATGGAGACACAATACCAGGTCTTGGGGCAATGGAAATTATCTCA  423

seq1  TAGGACTATTTATATCTCTACAGTGTCCTTAAGGTCAAGTGATATGCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTATTTATATCTCTACAGTGTCCTTAAGGTCAAGTGATATGCATA  473

seq1  TGTTATTTGACATGTATCTTATCTGAATGAAACAAGTCACGGGATGTGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTGACATGTATCTTATCTGAATGAAACAAGTCACGGGATGTGTC  523

seq1  TGATGTAATCTGAAGTTTCATAGCTGTGTCACGTTTGTCTGTGTTGTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAATCTGAAGTTTCATAGCTGTGTCACGTTTGTCTGTGTTGTCAC  573

seq1  CATTTCTGAGGGTTTAGCTTTGAGGCACACTGATCAGCAAGTTTATGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGAGGGTTTAGCTTTGAGGCACACTGATCAGCAAGTTTATGTTT  623

seq1  CAAACTCCCTTAGCACATATCATTTTTCACTGGCTAAGCTACAGTCAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCCTTAGCACATATCATTTTTCACTGGCTAAGCTACAGTCAGGC  673

seq1  TATTACATGATAACCCTCTCTCAGTAGGTCTATTTAAAAACATGATGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATGATAACCCTCTCTCAGTAGGTCTATTTAAAAACATGATGATT  723

seq1  TTACTCATATTTTATTCTGTTGTTCTTTGTAGCCTGTAAGTATGAAAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCATATTTTATTCTGTTGTTCTTTGTAGCCTGTAAGTATGAAAAGA  773

seq1  AAAATATCTTTAAATTTTATTTTTTCATTCCAAGGACTCTTAAAGGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTTTAAATTTTATTTTTTCATTCCAAGGACTCTTAAAGGAAAA  823

seq1  TCTTAATAAATAGAAAGTTCTTTCAGCTTATGTTCTGGAAATATAAAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATAAATAGAAAGTTCTTTCAGCTTATGTTCTGGAAATATAAAGAA  873

seq1  GCCATTAACATAAAGAGTTTTACTGTCCAAAATTGATTGCTTGTTCTGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAACATAAAGAGTTTTACTGTCCAAAATTGATTGCTTGTTCTGAA  923

seq1  GCTTTTTATCCCAGTCCCACATCTAAATCAGTGTTTGTGCCCCTGTGCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTATCCCAGTCCCACATCTAAATCAGTGTTTGTGCCCCTGTGCTA  973

seq1  ACAAAATCATTATAAATTTTTCAAACAAACTGTTAATGAGTTTTATTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCATTATAAATTTTTCAAACAAACTGTTAATGAGTTTTATTATT  1023

seq1  TTCTCAACGTCTATATATGCCAATAGTCACAGTCACAATAGTGCCTTTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACGTCTATATATGCCAATAGTCACAGTCACAATAGTGCCTTTAA  1073

seq1  AAATAGTTTTTGCAGGTTGTATTGTTACAGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  AAATAGTTTTTGCAGGTTGTATTGTTACAGAATTC  1108

seq1: chr5_58294823_58295963
seq2: B6Ng01-111N03.g_67_1175

seq1  GAATTCTCATGCATTGAGCATGAAAGGAAGGCTTCCTGGGGCCTATGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGCATTGAGCATGAAAGGAAGGCTTCCTGGGGCCTATGGCA  50

seq1  TCTGCAAGTGAAGGTCTTGAATGTTCTCTTGAACTACAGGCTGTCCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGTGAAGGTCTTGAATGTTCTCTTGAACTACAGGCTGTCCTGTG  100

seq1  GATCTAATAGATTACAAACCACTGCAGGGGATAAAGGGAAGGTTCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAATAGATTACAAACCACTGCAGGGGATAAAGGGAAGGTTCAAATG  150

seq1  TCAAATCATGGATAAGAGGAGTTTGTTAGAGAAGGTGCAGAAATTACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCATGGATAAGAGGAGTTTGTTAGAGAAGGTGCAGAAATTACAAA  200

seq1  TTAGCCCAGGTTTTTTATTTTTTAACTAAAATTTCATATAATATATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCAGGTTTTTTATTTTTTAACTAAAATTTCATATAATATATTCTG  250

seq1  ATTATAGGTTGCCAAAACCTACTCCCAGACTCTCCCAATCCATCCAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGTTGCCAAAACCTACTCCCAGACTCTCCCAATCCATCCAACTC  300

seq1  CGTGCCCTCCCTCTCTCTGTCTTGGGAAAACATCAATTTAAAATCATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCCTCCCTCTCTCTGTCTTGGGAAAACATCAATTTAAAATCATACA  350

seq1  AAACAAAATAAAAAACAAAGTACAAGAAACACACACACACAAATGCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATAAAAAACAAAGTACAAGAAACACACACACACAAATGCTACA  400

seq1  CACATGTGTGAGCAAACACACACACACACACACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTGAGCAAACACACACACACACACACACACACACACACACACA  450

seq1  CACACACACAAACACCCCAAGCCCCATAAAGACAAAAATAAAAAATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAAACACCCCAAGCCCCATAAAGACAAAAATAAAAAATCATA  500

seq1  ATAAACAAGCAAAATACCAGGAATATAGGAATATAAAACCTGCCTCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGCAAAATACCAGGAATATAGGAATATAAAACCTGCCTCCAAA  550

seq1  AGCAATATACAAAAAGAATCGATAAAGAATGCCACTGAATTCGTTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATACAAAAAGAATCGATAAAGAATGCCACTGAATTCGTTTCACA  600

seq1  CTGGACAAGGACTTTTTTTGTACTTAGCTGTGATGCGAATAAATTTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAAGGACTTTTTTTGTACTTAGCTGTGATGCGAATAAATTTGGCA  650

seq1  AAGAGGAGCTCGTGGTAATCCACATCTCTCAAAATATACACACCAAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGCTCGTGGTAATCCACATCTCTCAAAATATACACACCAAAGAT  700

seq1  CAATGAATGTTATCCTGCAACATCGTTTGGATGTACACATTTTATTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATGTTATCCTGCAACATCGTTTGGATGTACACATTTTATTTTAT  750

seq1  GTATTTTTGTGTTTTACTCACATTCATGTATGTGTAGTATGCTCCTGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTGTGTTTTACTCACATTCATGTATGTGTAGTATGCTCCTGGCA  800

seq1  GCTCTAAATGTCAGAAGAGGGCATCAGATGCAATGGAATTGGACTTTTGG  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTCTAAATGTCAGAAGAGGGCATCAGATGCAATGGGATTGGACTTTTGG  850

seq1  ATGGGTTTGTGCCATTCTGGCTGTGCTGGTATCCCAAGCAAGATCTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTGTGCCATTCTGGCTGTGCTGGTATCCCAAGCAAGATCTTTTG  900

seq1  AGAGAGTAATAGTGCTCTCAATTGCTGAACTATCTCTGAAGCCCCAGGTA  950
      ||||||| ||||||||||| |||||||||||||||||||   ||||||| 
seq2  AGAGAGT-ATAGTGCTCTC-ATTGCTGAACTATCTCTGA--GCCCAGGT-  945

seq1  ACTTACACTTTAAGGCAAGAAAATGAAACAAAAGATAAACAGCAACTTAT  1000
      ||||||||||| ||||||| |||||||||||||||| |||||| ||||||
seq2  ACTTACACTTT-AGGCAAG-AAATGAAACAAAAGAT-AACAGC-ACTTAT  991

seq1  GTAAAACAGGGATGATTGTTGCACTAATCTGTTTGTATAAAGGTAATAGT  1050
      || |||||  ||||||   |||||| ||||||||||||||  || |||||
seq2  GT-AAACA-TGATGAT--GTGCACT-ATCTGTTTGTATAA--GT-ATAGT  1033

seq1  CTAGGGAGCAATTTGATACTATGTCCATTTAACAGCGTTGTCATACTAAG  1100
      ||| ||||||   |||| || ||||   ||||| |||||| | |||| ||
seq2  CTAAGGAGCA---TGAT-CTTTGTC--ATTAAC-GCGTTG-CCTACT-AG  1074

seq1  TTCTTCCCTAGGACCTAGGACCTCCCCAGCTAGGTTGTTCT  1141
      ||||| |||| || ||||||   | ||||||||| ||||||
seq2  TTCTT-CCTA-GAACTAGGA---CTCCAGCTAGG-TGTTCT  1109