BAC Information

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BAC

Clone NameB6Ng01-111O05
Chromosome5 (Build37)
Map Location 148,508,607 - 148,528,106
singlet/doubletdoublet
Overlap geneFlt1
Upstream geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O05.bB6Ng01-111O05.g
ACCDH918104DH918105
length8541,163
definitionDH918104|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O05, 5' end.DH918105|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,527,526 - 148,528,106)(148,508,607 - 148,509,784)
sequence
gaattcctacatcacgttgccacattcttttgctccaagctagacctggc
ccaggttcctggactgcggaggcggcttcttctgaggggaggggcaacac
catttgacacttccactttgcttttccgtcttggctagcgtttggcccag
aaaattatagtagctgataaataataatgagtgctaaaaaaatgtcttgg
cccttacaacggggcttgggcaagaaagactcgattctgacctatgggac
ggggttcccattcataaagcttgttcgtcacacacaggccagggttagcc
tggcatgcagagttggcagagcagcctcttaggatgattgtgattccagt
aagggagccagctggtcctggaggctgagtgttagcagctctgtggcggc
ggcggcagcggaggcagcagcagcagcagcagcagcagcagtggctgctg
ctcctcctcctcctctttctccttccctgccttcctcctccctctctccc
ttccttcttctccttctcttcttcctcctcactcctccctttctccctcc
tcctcctcttcctgctcttcttcctcctcttcctgctcctcttcctcctc
ctcctcttcctcctcttcctcctcctccgcctctttacctggcctcactg
tatcgccctagctgtcctggaactccatgctgtagaccaggctggcttta
aaatcagagagatctgcctgcctctgcctttcaagtgctgggattaagag
cagttaccaccatgccctgcagctttgtagcttcttgcagtcttagccca
tggaacccttggccctcttctgtagagacagagaagctgtgggtagggtg
tgtg
gaattccttaaacctatcagttctctccttccgggtcacttctaggccgc
taggcacacaccaaaccttaactggcttccctgcctcagtctggacccac
ctgtctcctcccaccactgagactgaggcgggttaagactgccctcttaa
tcctgcaacagcaggtgccccattgctttctgaaaagcctgcggtgaggg
gcattcccttgctagagaagagtggagtaactaggttaggggtggggata
aatggtaccctataaacacaaccatttgctccgcaaaagggaaatttaac
aggtgtgagaagtcaaattagtggaacttttcagccagccaaccaactta
gtagtcagctgaagtagttaaccacgatcatttgaatacttaaattactc
taaggctggcttcccgtggaggcttggtgggcaggtgtaaactgcagtgt
cagagtggagacaactagtgttctgtatgctatcagaggctctgcccaca
tcagaactcagctggcaactgcctgcgaaacaggggccctccactatgtc
ctaaacactctctgctcgtccacgggttgcatttggtagtaagtagaagc
tatacgtgcctggttctttctttctcaacccccggaagctctacagctgc
cttccaaaataaacttatacaaggtctcttgtcgttataagccactaaaa
atcaagagagaatctgcgctattatcagagagagaggcaaggtttgtgtc
ttacaacggaagcaaaccgccgtgggagtagtcaggaaaaaaatggggga
agcagccccgatttcctcagaagagaataaataaagtaacaaaacaaaaa
tataggaagttttggcaactcgggagagttcctgctggtccagcgtcttg
gctttaagaagctctggggaggctaatcaggacctccagagaaagacagt
aggtaggggcagatccctgacaggtggctactggtccccacggattccat
ggcagcatcagtatcagtcttggcacactgtcgactaagccgacattaat
ccgcagatcggtttaacatgggggtgctaggtctgtcttgcttggacgct
gaactctcgctgtctcagacttcaagggcgacggcactcggggagagcct
gtcctaaatcgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148527526_148528106
seq2: B6Ng01-111O05.b_320_901 (reverse)

seq1  CACACACCCTA-CCACAGCTTCTCTGTCTCTACAGAAGAGGGCCAAGGGT  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACACACCCTACCCACAGCTTCTCTGTCTCTACAGAAGAGGGCCAAGGGT  50

seq1  TCCATGGGCTAAGACTGCAAGAAGCTACAAAGCTGCAGGGCATGGTGGTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGCTAAGACTGCAAGAAGCTACAAAGCTGCAGGGCATGGTGGTA  100

seq1  ACTGCTCTTAATCCCAGCACTTGAAAGGCAGAGGCAGGCAGATCTCTCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTAATCCCAGCACTTGAAAGGCAGAGGCAGGCAGATCTCTCTG  150

seq1  ATTTTAAAGCCAGCCTGGTCTACAGCATGGAGTTCCAGGACAGCTAGGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGCCAGCCTGGTCTACAGCATGGAGTTCCAGGACAGCTAGGGC  200

seq1  GATACAGTGAGGCCAGGTAAAGAGGCGGAGGAGGAGGAAGAGGAGGAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTGAGGCCAGGTAAAGAGGCGGAGGAGGAGGAAGAGGAGGAAGA  250

seq1  GGAGGAGGAGGAAGAGGAGCAGGAAGAGGAGGAAGAAGAGCAGGAAGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAAGAGGAGCAGGAAGAGGAGGAAGAAGAGCAGGAAGAGG  300

seq1  AGGAGGAGGGAGAAAGGGAGGAGTGAGGAGGAAGAAGAGAAGGAGAAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGGAGAAAGGGAGGAGTGAGGAGGAAGAAGAGAAGGAGAAGAA  350

seq1  GGAAGGGAGAGAGGGAGGAGGAAGGCAGGGAAGGAGAAAGAGGAGGAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAGAGAGGGAGGAGGAAGGCAGGGAAGGAGAAAGAGGAGGAGGA  400

seq1  GGAGCAGCAGCCACTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCCGCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGCAGCCACTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCCGCTGC  450

seq1  CGCCGCCGCCACAGAGCTGCTAACACTCAGCCTCCAGGACCAGCTGGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCCGCCACAGAGCTGCTAACACTCAGCCTCCAGGACCAGCTGGCTC  500

seq1  CCTTACTGGAATCACAATCATCCTAAGAGGCTGCTCTGCCAACTCTGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTGGAATCACAATCATCCTAAGAGGCTGCTCTGCCAACTCTGCAT  550

seq1  GCCAGGCTAACCCTGGCCTGTGTGTGACGAAC  581
      ||||||||||||||||||||||||||||||||
seq2  GCCAGGCTAACCCTGGCCTGTGTGTGACGAAC  582

seq1: chr5_148508607_148509784
seq2: B6Ng01-111O05.g_67_1229

seq1  GAATTCCTTAAACCTATCAGTTCTCTCCTTCCGGGTCACTTCTAGGCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAACCTATCAGTTCTCTCCTTCCGGGTCACTTCTAGGCCGC  50

seq1  TAGGCACACACCAAACCTTAACTGGCTTCCCTGCCTCAGTCTGGACCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACACACCAAACCTTAACTGGCTTCCCTGCCTCAGTCTGGACCCAC  100

seq1  CTGTCTCCTCCCACCACTGAGACTGAGGCGGGTTAAGACTGCCCTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTCCCACCACTGAGACTGAGGCGGGTTAAGACTGCCCTCTTAA  150

seq1  TCCTGCAACAGCAGGTGCCCCATTGCTTTCTGAAAAGCCTGCGGTGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAACAGCAGGTGCCCCATTGCTTTCTGAAAAGCCTGCGGTGAGGG  200

seq1  GCATTCCCTTGCTAGAGAAGAGTGGAGTAACTAGGTTAGGGGTGGGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCTTGCTAGAGAAGAGTGGAGTAACTAGGTTAGGGGTGGGGATA  250

seq1  AATGGTACCCTATAAACACAACCATTTGCTCCGCAAAAGGGAAATTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACCCTATAAACACAACCATTTGCTCCGCAAAAGGGAAATTTAAC  300

seq1  AGGTGTGAGAAGTCAAATTAGTGGAACTTTTCAGCCAGCCAACCAACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGAGAAGTCAAATTAGTGGAACTTTTCAGCCAGCCAACCAACTTA  350

seq1  GTAGTCAGCTGAAGTAGTTAACCACGATCATTTGAATACTTAAATTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCAGCTGAAGTAGTTAACCACGATCATTTGAATACTTAAATTACTC  400

seq1  TAAGGCTGGCTTCCCGTGGAGGCTTGGTGGGCAGGTGTAAACTGCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTGGCTTCCCGTGGAGGCTTGGTGGGCAGGTGTAAACTGCAGTGT  450

seq1  CAGAGTGGAGACAACTAGTGTTCTGTATGCTATCAGAGGCTCTGCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGAGACAACTAGTGTTCTGTATGCTATCAGAGGCTCTGCCCACA  500

seq1  TCAGAACTCAGCTGGCAACTGCCTGCGAAACAGGGGCCCTCCACTATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTCAGCTGGCAACTGCCTGCGAAACAGGGGCCCTCCACTATGTC  550

seq1  CTAAACACTCTCTGCTCGTCCACGGGTTGCATTTGGTAGTAAGTAGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACACTCTCTGCTCGTCCACGGGTTGCATTTGGTAGTAAGTAGAAGC  600

seq1  TATACGTGCCTGGTTCTTTCTTTCTCAACCCCCGGAAGCTCTACAGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTGCCTGGTTCTTTCTTTCTCAACCCCCGGAAGCTCTACAGCTGC  650

seq1  CTTCCAAAATAAACTTATACAAGGTCTCTTGTCGTTATAAGCCACT-AAA  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTCCAAAATAAACTTATACAAGGTCTCTTGTCGTTATAAGCCACTAAAA  700

seq1  ATCAAGAGAGAATCTGCGCTATTATCAGAGAGAGAGGCAAGGTTTGTGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGAGAATCTGCGCTATTATCAGAGAGAGAGGCAAGGTTTGTGTC  750

seq1  TTACAACGGAAGCAAACCGCCGTGGGAGTAGTCAGGAAAAAAATGGGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACGGAAGCAAACCGCCGTGGGAGTAGTCAGGAAAAAAATGGGGGA  800

seq1  AGCAGCCCCGATTTCCTCAGAAGAGAATAAATAAAAGTAACAAAAACAAA  849
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  AGCAGCCCCGATTTCCTCAGAAGAGAATAAAT-AAAGTAAC-AAAACAAA  848

seq1  AATATAGGAAAGTTTTGGCAACTCGGGAGAGTTCCTGCTGTTCCAGCGTC  899
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  AATATAGG-AAGTTTTGGCAACTCGGGAGAGTTCCTGCTGGTCCAGCGTC  897

seq1  TTGGCTTTAAGAAGCTCT-GTGAGGCTAATCAGAACCTCCAGAGAAAGAC  948
      |||||||||||||||||| | |||||||||||| ||||||||||||||||
seq2  TTGGCTTTAAGAAGCTCTGGGGAGGCTAATCAGGACCTCCAGAGAAAGAC  947

seq1  AGTAAGGTAGGTGCAGATCCCTGACAAGGTGGCTACTGTTCCCCACGAAT  998
      ||| ||||||| ||||||||||||| |||||||||||| |||||||| ||
seq2  AGT-AGGTAGGGGCAGATCCCTGAC-AGGTGGCTACTGGTCCCCACGGAT  995

seq1  CCCATGGCAGCATCAGTTATCAGTCTTGGCACACTGTCCGACTAAGCCGA  1048
       ||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TCCATGGCAGCATCAG-TATCAGTCTTGGCACACTGT-CGACTAAGCCGA  1043

seq1  CATTTATCCGCAGTATCGGTTATAACAT-TGGGTGCTAAGTTCCTGTCTT  1097
      |||| |||||||| ||||||| ||||||  |||||||| ||  |||||||
seq2  CATTAATCCGCAG-ATCGGTT-TAACATGGGGGTGCTAGGT--CTGTCTT  1089

seq1  GCTTGGACAGCTG-ACTCTCGCTGTCTCAGGACTTCAAGGGCAGACAGGC  1146
      |||||||| |||| ||||||||||||||| |||||||||||| ||| |||
seq2  GCTTGGAC-GCTGAACTCTCGCTGTCTCA-GACTTCAAGGGC-GAC-GGC  1135

seq1  AACTCGGTGAGAGCCTGTCCCTTAAATACGAA  1178
       |||||| ||||||||||||  ||||| ||||
seq2  -ACTCGGGGAGAGCCTGTCC--TAAAT-CGAA  1163