BAC Information

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BAC

Clone NameB6Ng01-111O20
Chromosome5 (Build37)
Map Location 84,893,221 - 85,025,736
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O20.bB6Ng01-111O20.g
ACCDH918134DH918135
length9071,072
definitionDH918134|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O20, 5' end.DH918135|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,024,831 - 85,025,736)(84,893,221 - 84,894,303)
sequence
gaattcaattgaatatttatactaatgtgtaagtctttccatcttattac
gaagttctaagagctggacaatctgatcaaatgattttttttttcctgta
gctctcagctgacaattatttgtggctgttcttccagtcatgttctgcaa
ttgacgctgtgcccttactgtttcttaatttaattccacatttgctcaag
aattgctttacttatttgctggctaagaataggagttttgtgctaaatct
ccagtcatttcactgtaagttttaatctaaatccacttgaggttgtcaat
cactgtaacacgagaagtagtacagtgaagcctgaaatatggtcaacatc
tgacttttccacccttctttgcatactagcaattgaaccatcaatcatat
actatatttaaactgacatatgaaaaattggtcattttgactgaaggctt
tatgattattcaaaaactggcaagaaaaataaacaaatattaagtgaaaa
agtcctacaaacagaaggattatgaaaataacttctatcaagtcatcttt
agactattctccatacctaattttttttgctctctgtatagagagttggg
tttttaatagcaaaatctgaaaagcagtctggttgatggaaactgtacca
tctctcttgacgagttgattataaatgtatttctacttgattgaagctac
ttcactttagtttcatgaaagttattttagttagataaaataaatgtttt
aatttttcagtagtaaacaatggaaagttttttttttcccagactcaaaa
aagtaaaagaaataaaatactacatggaattggaatttaaatctttatta
ggttgtgaaaacttaacaaaaagtttttgttagacaaataatctcagtgt
gttgtgt
gaattccaagcccatggtcttgctcaaggatgttctaggactgttggaac
actgggggaaggctttagccatgtcggaattcaattttaaaaggcactta
taataggaaaatactgaaagagagcacgtggatctatatactagactaac
gtggaaatggaacgcgggaatgaaaaattaatgtatgggtagagaacgct
agactccaggaggagagcttccttgaaactcttttgcctcatgagtgact
tttaagcctttcggcttgtccagctgactcgaccagagagcctaacactc
ataacgataattgtttctgaaattgacaataagtgagattccaacgggtt
caaagaatacccagaatgacccaatgggcttataccttcataggaatggt
attgagttgtgcaaactcataaatcaaaattaagttgttaatatctgtat
ttccacctatacatttttccctagaaaattgactgggaaaagactgaatg
gaaatataaactctaagaggatattctcatgaacatggcttcttttttga
gcaggaccatggaagcctaaaacttgattttatccatgtttactttgtac
atgacttaaattttccatgctaaactttttgaaaagactaaagcatgtaa
ttttgacagtggagggcacacaagtttgtcagactagtcagcagtgataa
ttattgcagaaaatcaaggccatagaaaggtacttttatggagaataaaa
ctgaagcctcagataaaaagccatgcaaaatgattagctattattttaac
actatcaagaaatcaaggaaagcatcagtgtgtgagtaggagtcaggaag
gtttatatatagagagacaaaggttgcatttttgttctttatagctttgt
taacattgtgtaatgctataaccttttgagcttcagtttattcaactcta
aatgagcttaattatctctgcctcaagtagcagacaatttgggcagtctt
aaatagtataacccataacatatcatatgtatttagtacacatttaggag
tttgtcatcctcttttcttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85024831_85025736
seq2: B6Ng01-111O20.b_48_954 (reverse)

seq1  ACACAAACACACTGAGATTATTTGTCTAACAAAAACTTTTTGTTAAGTTT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAC-AACACACTGAGATTATTTGTCTAACAAAAACTTTTTGTTAAGTTT  49

seq1  TCACAACCTAATAAAGATTT-AATTCCAATTCCATGTAGTATTTTATTTC  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCACAACCTAATAAAGATTTAAATTCCAATTCCATGTAGTATTTTATTTC  99

seq1  TTTTACTTTTTTGAGTCTGGG-AAAAAAAAACTTTCCATTGTTTACTACT  148
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTACTTTTTTGAGTCTGGGAAAAAAAAAACTTTCCATTGTTTACTACT  149

seq1  GAAAAATTAAAACATTTATTTTATCTAACTAAAATAACTTTCATGAAACT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAAAACATTTATTTTATCTAACTAAAATAACTTTCATGAAACT  199

seq1  AAAGTGAAGTAGCTTCAATCAAGTAGAAATACATTTATAATCAACTCGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAGTAGCTTCAATCAAGTAGAAATACATTTATAATCAACTCGTC  249

seq1  AAGAGAGATGGTACAGTTTCCATCAACCAGACTGCTTTTCAGATTTTGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGATGGTACAGTTTCCATCAACCAGACTGCTTTTCAGATTTTGCT  299

seq1  ATTAAAAACCCAACTCTCTATACAGAGAGCAAAAAAAATTAGGTATGGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACCCAACTCTCTATACAGAGAGCAAAAAAAATTAGGTATGGAG  349

seq1  AATAGTCTAAAGATGACTTGATAGAAGTTATTTTCATAATCCTTCTGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCTAAAGATGACTTGATAGAAGTTATTTTCATAATCCTTCTGTTT  399

seq1  GTAGGACTTTTTCACTTAATATTTGTTTATTTTTCTTGCCAGTTTTTGAA  448
      |||||||||||||||||||                 ||||||||||||||
seq2  GTAGGACTTTTTCACTTAANNNNNNNNNNNNNNNNNTGCCAGTTTTTGAA  449

seq1  TAATCATAAAGCCTTCAGTCAAAATGACCAATTTTTCATATGTCAGTTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATAAAGCCTTCAGTCAAAATGACCAATTTTTCATATGTCAGTTTA  499

seq1  AATATAGTATATGATTGATGGTTCAATTGCTAGTATGCAAAGAAGGGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTATATGATTGATGGTTCAATTGCTAGTATGCAAAGAAGGGTGG  549

seq1  AAAAGTCAGATGTTGACCATATTTCAGGCTTCACTGTACTACTTCTCGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAGATGTTGACCATATTTCAGGCTTCACTGTACTACTTCTCGTG  599

seq1  TTACAGTGATTGACAACCTCAAGTGGATTTAGATTAAAACTTACAGTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGATTGACAACCTCAAGTGGATTTAGATTAAAACTTACAGTGAA  649

seq1  ATGACTGGAGATTTAGCACAAAACTCCTATTCTTAGCCAGCAAATAAGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGAGATTTAGCACAAAACTCCTATTCTTAGCCAGCAAATAAGTA  699

seq1  AAGCAATTCTTGAGCAAATGTGGAATTAAATTAAGAAACAGTAAGGGCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTCTTGAGCAAATGTGGAATTAAATTAAGAAACAGTAAGGGCAC  749

seq1  AGCGTCAATTGCAGAACATGACTGGAAGAACAGCCACAAATAATTGTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAATTGCAGAACATGACTGGAAGAACAGCCACAAATAATTGTCAG  799

seq1  CTGAGAGCTACAGGAAAAAAAAAATCATTTGATCAGATTGTCCAGCTCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCTACAGGAAAAAAAAAATCATTTGATCAGATTGTCCAGCTCTT  849

seq1  AGAACTTCGTAATAAGATGGAAAGACTTACACATTAGTATAAATATTCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCGTAATAAGATGGAAAGACTTACACATTAGTATAAATATTCAA  899

seq1  TTGAATTC  906
      ||||||||
seq2  TTGAATTC  907

seq1: chr5_84893221_84894303
seq2: B6Ng01-111O20.g_69_1140

seq1  GAATTCCAAGCCCATGGTCTTGCTCAAGGATGTTCTAGGACTGTTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCATGGTCTTGCTCAAGGATGTTCTAGGACTGTTGGAAC  50

seq1  ACTGGGGGAAGGCTTTAGCCATGTCGGAATTCAATTTTAAAAGGCACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGGAAGGCTTTAGCCATGTCGGAATTCAATTTTAAAAGGCACTTA  100

seq1  TAATAGGAAAATACTGAAAGAGAGCACGTGGATCTATATACTAGACTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGAAAATACTGAAAGAGAGCACGTGGATCTATATACTAGACTAAC  150

seq1  GTGGAAATGGAACGCGGGAATGAAAAATTAATGTATGGGTAGAGAACGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATGGAACGCGGGAATGAAAAATTAATGTATGGGTAGAGAACGCT  200

seq1  AGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACT  250

seq1  TTTAAGCCTTTCGGCTTGTCCAGCTGACTCGACCAGAGAGCCTAACACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCTTTCGGCTTGTCCAGCTGACTCGACCAGAGAGCCTAACACTC  300

seq1  ATAACGATAATTGTTTCTGAAATTGACAATAAGTGAGATTCCAACGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGATAATTGTTTCTGAAATTGACAATAAGTGAGATTCCAACGGGTT  350

seq1  CAAAGAATACCCAGAATGACCCAATGGGCTTATACCTTCATAGGAATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATACCCAGAATGACCCAATGGGCTTATACCTTCATAGGAATGGT  400

seq1  ATTGAGTTGTGCAAACTCATAAATCAAAATTAAGTTGTTAATATCTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTGTGCAAACTCATAAATCAAAATTAAGTTGTTAATATCTGTAT  450

seq1  TTCCACCTATACATTTTTCCCTAGAAAATTGACTGGGAAAAGACTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTATACATTTTTCCCTAGAAAATTGACTGGGAAAAGACTGAATG  500

seq1  GAAATATAAACTCTAAGAGGATATTCTCATGAACATGGCTTCTTTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAAACTCTAAGAGGATATTCTCATGAACATGGCTTCTTTTTTGA  550

seq1  GCAGGACCATGGAAGCCTAAAACTTGATTTTATCCATGTTTACTTTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACCATGGAAGCCTAAAACTTGATTTTATCCATGTTTACTTTGTAC  600

seq1  ATGACTTAAATTTTCCATGCTAAACTTTTTGAAAAGACTAAAGCATGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTAAATTTTCCATGCTAAACTTTTTGAAAAGACTAAAGCATGTAA  650

seq1  TTTTGACAGTGGAGGGCACACAAGTTTGTCAGACTAGTCAGCAGTGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAGTGGAGGGCACACAAGTTTGTCAGACTAGTCAGCAGTGATAA  700

seq1  TTATTGCAGAAAATCAAGGCCATAGAAAGGTACTTTTATGGAGAATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCAGAAAATCAAGGCCATAGAAAGGTACTTTTATGGAGAATAAAA  750

seq1  CTGAAGCCTCAGATAAAAAGCCATGCAAAATGATTAGCTATTA-TTTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGAAGCCTCAGATAAAAAGCCATGCAAAATGATTAGCTATTATTTTAAC  800

seq1  ACTATCAAGAAATCAAGGAAAGCATCAGTGTGTGAGGTAGGAGTCAGGAA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTATCAAGAAATCAAGGAAAGCATCAGTGTGTGA-GTAGGAGTCAGGAA  849

seq1  GGTTTATATATTAGAGAGACAAAGGTTGCATTTTTGTTCTTTATTAGCTT  899
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  GGTTTATATA-TAGAGAGACAAAGGTTGCATTTTTGTTCTTTA-TAGCTT  897

seq1  TGTT-ACATTGTGTAATGCTATTAACCTTTTGAGCTTCAGTTTATTCAAC  948
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTAACATTGTGTAATGCTA-TAACCTTTTGAGCTTCAGTTTATTCAAC  946

seq1  TCTAAAATGAGCTTAATTATCTCTGCCTCAAAAGGTAGCAAGACAAATTT  998
      ||| |||||||||||||||||||||||||||   ||||| |||||| || 
seq2  TCT-AAATGAGCTTAATTATCTCTGCCTCAA---GTAGC-AGACAATTTG  991

seq1  GGCAGTCTTAACATAGTATAACCAATTAACATATCATATGTAATTAGTAC  1048
      ||||||||||| ||||||||||| | |||||||||||||||| |||||||
seq2  GGCAGTCTTAA-ATAGTATAACCCA-TAACATATCATATGTATTTAGTAC  1039

seq1  ACATTTAGGAAGTTTTGTCATCCTCTTTTCCTAAC  1083
      ||||||||||   ||||||||||||||||| ||||
seq2  ACATTTAGGA--GTTTGTCATCCTCTTTTCTTAAC  1072