BAC Information

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BAC

Clone NameB6Ng01-112H20
Chromosome5 (Build37)
Map Location 72,582,516 - 72,718,786
singlet/doubletdoublet
Overlap geneAtp10d, Corin
Upstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8
Downstream geneNfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112H20.bB6Ng01-112H20.g
ACCDH918540DH918541
length1,1231,136
definitionDH918540|Mus musculus domesticus DNA, BAC clone: B6Ng01-112H20, 5' end.DH918541|Mus musculus domesticus DNA, BAC clone: B6Ng01-112H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,582,516 - 72,583,485)(72,717,620 - 72,718,786)
sequence
gaattcctagctatctctccagcatcatgtctgcctgaatgctaccgggc
ttcttgccatgatgataatggactaattcccggaactataagccagtccc
aattaaatgttttctttctggtcatggtgtctcttcacagcaataaaact
gtaactaagatgttgtgggaaatatttaaagtgagccagcacgttcctgt
gctagtgcctgctcttaccagcttacccctgctgtgtccaatcgctgtgt
tcccagctcttcttagattgtccctggaaccgcttgttccctctctgcca
ttggctctgttccacattctagtaaccaaatggaactgctaacgtcatga
ttgcataccacaatacccagtaaacgggtaaaatcaagactcttaaagct
tgtagttatggttaaccaatcagatttaagtatcaataaaatcacaattt
acaagataccaacacagtaatttcagagccaattgatagtgataaaagct
ttatcccaattgtgctaactttatgacatcatcatgttgccctccatttt
cctctcccactttctcctgctctctgtcactcttagctctgcctcccttt
tcttcaatcacatgcctcctctgcactaatgtaattggacagggaaaatt
ctgcaaccctaagatacatagatactttggtattcttccaatatatcagg
tgtgatggctatccctggttgtcaacttgactatatgtggagtgaagtac
aattcagaaatggagggcacacctgtgatccagatcttgaggctggaaga
caaacacctttgatccacctcttgagacaaagtggccatgaacagcctag
cccttaggcaagacggtacacaccctttaatcccaggagtcacacaagca
gatctcgagttcaaggacagccaggaaaagagcaaggttcaagtcagaaa
gcttgggtctaagttgtgctggtacacacctttatctgagcgacacttct
gctggagcctacagaaagatacaggaaaatggaagggcttttctttcttt
acagcttgcacttaatggccagacatgactatttagtcaggattccggat
ttatacagaagaacagcaaaacg
gaattcttggataaatgagtaataaaatcaggtcatttgagattggcttc
aggtatacttgtcaacttattttggtggctcataggctgagagacacaca
gagagcagaacagggaaagagtgaagctaatgatcaggtgaggcctaatc
tctggtatgaggatgctctgcttggaaagcttttgtttcctgggtttcta
gagactagctgtgttgtagaaactcaaacttctgctactgatgccccaaa
caagctctacacaacctttgaatcttcgagccaaagtcctagattgcaga
atctttctgaccatgattggtctacactccaggtaggaggggaaagagac
tggctttctttcttggttttcagaatggagtgccccttatagtggtcagc
ctttcggttccaaacacaatctacttcaaaagttgaaccttaggaaccaa
cccttagctggttctgcttaccttccatgctctatttcactttgtggagt
atgtgcttatgagtggtgatctaaactagacattgtgcagaggatgcata
gggggacaccattactgggcttgatggtatagtgggagagacacaaagga
cataggtttcatttcattacttgacaatgacatagacttagagcagagct
taaggaattcctatttaaagtatgtaagagaaatagattcagctttactc
cttgggaggattcattctgtacacacagactgaataaagcaccaatattt
agtatctgaaagtaactcacccttcctcttaaaggggcattcattgaatt
cagtgggtagtttataaactagtttgtaaacaacaaacaacaaacaaata
caaaacaaaaaaacaaacaaacaaaaaaactcctgcctatgctaaattgt
gtgttttctgggattgtacagcaatattttctggtagaggcagcttatta
aaacatggtcatgggctctgtttccatgtttagagcaaatggcggaccca
tattaagtgtttgtcttgtaaaagattgatgtttttgttaaagtgagact
gctttccatctgtagtgttcagtgtcaccccagcttgaagcacatgcttg
ctgctagacaagcacaattcaggtcctgagtctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72582516_72583485
seq2: B6Ng01-112H20.b_202_1167

seq1  AGATGTTGTGGGAAATATTTAAAGTGAGCCAGCACGTTCCTGTGCTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTGTGGGAAATATTTAAAGTGAGCCAGCACGTTCCTGTGCTAGTG  50

seq1  CCTGCTCTTACCAGCTTACCCCTGCTGTGTCCAATCGCTGTGTTCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTTACCAGCTTACCCCTGCTGTGTCCAATCGCTGTGTTCCCAGC  100

seq1  TCTTCTTAGATTGTCCCTGGAACCGCTTGTTCCCTCTCTGCCATTGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTAGATTGTCCCTGGAACCGCTTGTTCCCTCTCTGCCATTGGCTC  150

seq1  TGTTCCACATTCTAGTAACCAAATGGAACTGCTAACGTCATGATTGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACATTCTAGTAACCAAATGGAACTGCTAACGTCATGATTGCATA  200

seq1  CCACAATACCCAGTAAACGGGTAAAATCAAGACTCTTAAAGCTTGTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATACCCAGTAAACGGGTAAAATCAAGACTCTTAAAGCTTGTAGTT  250

seq1  ATGGTTAACCAATCAGATTTAAGTATCAATAAAATCACAATTTACAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAACCAATCAGATTTAAGTATCAATAAAATCACAATTTACAAGAT  300

seq1  ACCAACACAGTAATTTCAGAGCCAATTGATAGTGATAAAAGCTTTATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACAGTAATTTCAGAGCCAATTGATAGTGATAAAAGCTTTATCCC  350

seq1  AATTGTGCTAACTTTATGACATCATCATGTTGCCCTCCATTTTCCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGCTAACTTTATGACATCATCATGTTGCCCTCCATTTTCCTCTCC  400

seq1  CACTTTCTCCTGCTCTCTGTCACTCTTAGCTCTGCCTCCCTTTTCTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTCCTGCTCTCTGTCACTCTTAGCTCTGCCTCCCTTTTCTTCAA  450

seq1  TCACATGCCTCCTCTGCACTAATGTAATTGGACAGGGAAAATTCTGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGCCTCCTCTGCACTAATGTAATTGGACAGGGAAAATTCTGCAAC  500

seq1  CCTAAGATACATAGATACTTTGGTATTCTTCCAATATATCAGGTGTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATACATAGATACTTTGGTATTCTTCCAATATATCAGGTGTGATG  550

seq1  GCTATCCCTGGTTGTCAACTTGACTATATGTGGAGTGAAGTACAATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCCTGGTTGTCAACTTGACTATATGTGGAGTGAAGTACAATTCAG  600

seq1  AAATGGAGGGCACACCTGTGATCCAGATCTTGAGGCTGGAAGACAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGGGCACACCTGTGATCCAGATCTTGAGGCTGGAAGACAAACAC  650

seq1  CTTTGATCCACCTCTTGAGACAAAGTGGCCATGAACAGCCTAGCCC-TAG  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTTGATCCACCTCTTGAGACAAAGTGGCCATGAACAGCCTAGCCCTTAG  700

seq1  GCAAGACGGTACACA-CCTTTAATCCCAGGAGTCACACAAGCAGATCTCC  748
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  GCAAGACGGTACACACCCTTTAATCCCAGGAGTCACACAAGCAGATCT-C  749

seq1  GAGTTCAAGGACAGCCAGGAAAAGAGCAAGGTTCAAGTCAAGAAAAGCTT  798
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  GAGTTCAAGGACAGCCAGGAAAAGAGCAAGGTTCAAGTCA--GAAAGCTT  797

seq1  GGGTCTAAG-TGTGCTGGTACACACCTTTAATCTGAGCGACACTTCTGCT  847
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  GGGTCTAAGTTGTGCTGGTACACACCTTT-ATCTGAGCGACACTTCTGCT  846

seq1  GGAAGCCTACAGAAAGATAACAGAAAAAGGAAGGGTTTGTTCTTCTTTAC  897
      || ||||||||||||||||   ||||| ||||||| || |  ||||||| 
seq2  GG-AGCCTACAGAAAGATACAGGAAAATGGAAGGGCTTTTCTTTCTTTA-  894

seq1  CAGCTTGCACTTAATTGCCAGCACATGACTATTTAGTCAGGATTCCAGA-  946
      ||||||||||||||| ||||| |||||||||||||||||||||||| || 
seq2  CAGCTTGCACTTAATGGCCAG-ACATGACTATTTAGTCAGGATTCCGGAT  943

seq1  TTATACAGAAGACCAGCAGAAACG  970
      |||||||||||| ||||| |||||
seq2  TTATACAGAAGAACAGCA-AAACG  966

seq1: chr5_72717620_72718786
seq2: B6Ng01-112H20.g_67_1202 (reverse)

seq1  AAAAGAACTCAGGAACTTGATTTGTGCCTTTGTCTAGCCAGCAAAGCATT  50
      ||||| ||||||| || ||| ||||||  |||||||| |||| ||||| |
seq2  AAAAG-ACTCAGG-ACCTGAATTGTGC--TTGTCTAG-CAGC-AAGCA-T  43

seq1  GTGCTTCCAGGCTGGGGTGAACACTGGAACAACCTACAGATGGAAAGCAG  100
      |||||| || ||||||||| ||||| |||||  |||||||||||||||||
seq2  GTGCTT-CAAGCTGGGGTG-ACACT-GAACA--CTACAGATGGAAAGCAG  88

seq1  TCTTCACTTTTTAACAAAAACATCAAATCTTTTTACCAGGACAAACACTT  150
      || ||||  ||||||||||||||| ||||||||   || |||||||||||
seq2  TC-TCAC--TTTAACAAAAACATC-AATCTTTT--ACAAGACAAACACTT  132

seq1  AATTATGGGTCTGCCATTTTGCTCTAAAACATGGAAAACAGAGCCCATGA  200
      || |||||||| |||| |||||||| |||||||| |||||||||||||||
seq2  AA-TATGGGTCCGCCA-TTTGCTCT-AAACATGG-AAACAGAGCCCATGA  178

seq1  CCATGTTTTTAATAAGCTGCCTCTACCAG-AAATATTGCTGTACAATCCC  249
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCATG-TTTTAATAAGCTGCCTCTACCAGAAAATATTGCTGTACAATCCC  227

seq1  AGAAAACACACAATTTAGCATAGGCAGGAGTTTTTTTTGTTTTGTTTTGT  299
      |||||||||||||||||||||||||||||||||||||        |||||
seq2  AGAAAACACACAATTTAGCATAGGCAGGAGTTTTTTT-------GTTTGT  270

seq1  TTTTTTTGTTTTTGTTTTTTGTTTGTTTGTTTGTTTGT--TTTACAAACT  347
      || ||   |||||||||| | |||||||| ||||||||  ||||||||||
seq2  TTGTT---TTTTTGTTTTGTATTTGTTTG-TTGTTTGTTGTTTACAAACT  316

seq1  AGTTTATAAACTACCCACTGAATTCAATGAATGCCCCTTTAAGAGGAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAAACTACCCACTGAATTCAATGAATGCCCCTTTAAGAGGAAGG  366

seq1  GTGAGTTACTTTCAGATACTAAATATTGGTGCTTTATTCAGTCTGTGTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTACTTTCAGATACTAAATATTGGTGCTTTATTCAGTCTGTGTGT  416

seq1  ACAGAATGAATCCTCCCAAGGAGTAAAGCTGAATCTATTTCTCTTACATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGAATCCTCCCAAGGAGTAAAGCTGAATCTATTTCTCTTACATA  466

seq1  CTTTAAATAGGAATTCCTTAAGCTCTGCTCTAAGTCTATGTCATTGTCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATAGGAATTCCTTAAGCTCTGCTCTAAGTCTATGTCATTGTCAA  516

seq1  GTAATGAAATGAAACCTATGTCCTTTGTGTCTCTCCCACTATACCATCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAAATGAAACCTATGTCCTTTGTGTCTCTCCCACTATACCATCAA  566

seq1  GCCCAGTAATGGTGTCCCCCTATGCATCCTCTGCACAATGTCTAGTTTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTAATGGTGTCCCCCTATGCATCCTCTGCACAATGTCTAGTTTAG  616

seq1  ATCACCACTCATAAGCACATACTCCACAAAGTGAAATAGAGCATGGAAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCACTCATAAGCACATACTCCACAAAGTGAAATAGAGCATGGAAGG  666

seq1  TAAGCAGAACCAGCTAAGGGTTGGTTCCTAAGGTTCAACTTTTGAAGTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGAACCAGCTAAGGGTTGGTTCCTAAGGTTCAACTTTTGAAGTAG  716

seq1  ATTGTGTTTGGAACCGAAAGGCTGACCACTATAAGGGGCACTCCATTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTTGGAACCGAAAGGCTGACCACTATAAGGGGCACTCCATTCTG  766

seq1  AAAACCAAGAAAGAAAGCCAGTCTCTTTCCCCTCCTACCTGGAGTGTAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGAAAGAAAGCCAGTCTCTTTCCCCTCCTACCTGGAGTGTAGA  816

seq1  CCAATCATGGTCAGAAAGATTCTGCAATCTAGGACTTTGGCTCGAAGATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATGGTCAGAAAGATTCTGCAATCTAGGACTTTGGCTCGAAGATT  866

seq1  CAAAGGTTGTGTAGAGCTTGTTTGGGGCATCAGTAGCAGAAGTTTGAGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTGTGTAGAGCTTGTTTGGGGCATCAGTAGCAGAAGTTTGAGTT  916

seq1  TCTACAACACAGCTAGTCTCTAGAAACCCAGGAAACAAAAGCTTTCCAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACACAGCTAGTCTCTAGAAACCCAGGAAACAAAAGCTTTCCAAG  966

seq1  CAGAGCATCCTCATACCAGAGATTAGGCCTCACCTGATCATTAGCTTCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATCCTCATACCAGAGATTAGGCCTCACCTGATCATTAGCTTCAC  1016

seq1  TCTTTCCCTGTTCTGCTCTCTGTGTGTCTCTCAGCCTATGAGCCACCAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCTGTTCTGCTCTCTGTGTGTCTCTCAGCCTATGAGCCACCAAA  1066

seq1  ATAAGTTGACAAGTATACCTGAAGCCAATCTCAAATGACCTGATTTTATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTGACAAGTATACCTGAAGCCAATCTCAAATGACCTGATTTTATT  1116

seq1  ACTCATTTATCCAAGAATTC  1167
      ||||||||||||||||||||
seq2  ACTCATTTATCCAAGAATTC  1136