BAC Information

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BAC

Clone NameB6Ng01-112J12
Chromosome5 (Build37)
Map Location 31,954,083 - 32,161,669
singlet/doubletdoublet
Overlap geneRbks, Bre
Upstream gene4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, LOC100040000
Downstream geneFosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112J12.bB6Ng01-112J12.g
ACCDH918618DH918619
length1,0101,159
definitionDH918618|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J12, 5' end.DH918619|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,954,083 - 31,955,091)(32,160,512 - 32,161,669)
sequence
gaattcacatatactcaactgctatagctcatcctgcctgtctattttat
ccagttgcctgcaagtccctcatagaagaagcaagtgagttgtatgtacc
tcgctctcgttgcagcagaaaatactggagagggtatagaactgggggtc
caggtcagccatggctggagctgggttgaacaaggttttcactgcaaagg
aatggaaaaggagctcaatggtcatcattttaaaatattgatttagttct
tttacttctcttttaggctagatgtaaagtaatggggttggtgtgcgtac
agactctaagggagagagagctgaggaccgtcattttcacactcaccaga
taaaaatcatttattaaaccacagatacagaaaggcttgggatgtcagtc
ttcatgacagcctggtatcaatcctttcgtttatccatttcctctatttt
tttaccttctcacttcagcttcaagggcaagcatcatatttacaactaac
atgagtctacaggtcaggtgaggacaacaagaacattaaagcaaaagtgt
ggtgtggaagaacatgtatgagtttggatggaacagtgaacacttctaga
ggccaatttaagtgcttatctgtggggtgggttcagagaagaaaaaagcg
acaggaaagaaacagcaaagaatcgagacttttctgatagtaacagtatg
taggaaaactgaggtaaatatgtgtattagatagacccaggtatgcctcc
caaaatagatacaaattactcatgccaacacacacacacacacacacaca
cacacacacacacacacacacactctcctgcccgcgcattcttggttctg
gattgagaaaaggggggcatctcgttcagagtcttagtgcgaactcagac
tatacactacagagaaggatgggtgtggggctgcagagcaagagccagac
actgtcactgcctttattacactgactgaagagaaaagtaaaagataaac
aaggccgagt
gaattcccaccacattcccctgcctcctgtcccctgctataggaatccta
cttcacaggctcattactgcctctccaactgcagggaaagtgtgacgagc
gggtgtggcagcagtcccaagatggtgcccgggactgcagctaagtctta
tgacttgcacctgacttccttatacacctgaaaataagccatggccatct
tgagagctccgcaggtgcaccatgatgctggtggtgtaaacaagtccata
tttggtggagacatgcccctgccgccctgattggctgaagctgcgtgcct
ggtgaggtggcgtggcctgccgtgagtggatgggggctgagagtatgtaa
gcagacctccctgggtgcccggggtccccgtagcagcattgaggcattac
tgcaataaaggctgttgagaagaatccgaagtgttgtatcgttcttgctg
gtcgagagcggacccgacaggaaggaaatatttctatgcaataaaaatta
ttttggtgttttttactccctcctcatccatgcaaaacaggaaagcatga
cacattgccttttatggttataaaagatccagatgaaggttctccgtgtt
ctcagacaattgtgctcacaatattaacacaacactttcctcactgaaca
ctgtttaaaagaggaaaatgccttatatgctctcagcttatatctccagg
gaagacagagcttgacgaatgtttactggaccaggtcactggataatcaa
acagggaggtcatagaaatcataaaattaatatgcttgcagatggctgct
taaaatgagaatgagaaggtactttttaattggttttaaaaaaaacaatt
ttattttctcttccaaatacttgaaccacacccttaacagtgtggtccac
agagtactaaaaacctagagcacgaattgcttatcttacaacatggtaac
tcagtgaatttgctgtttcaagaccaactccacaaaagccatcatctgct
gggttacttttatcgagggtgggacttttcacttgtcttattatctttga
agatcttttccatctagactaataatgttcctacttcaggaagaagtctt
acctagtttatccttaaggaatacgaaggctcctatctttctggctatgg
gtgagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31954083_31955091
seq2: B6Ng01-112J12.b_45_1054

seq1  GAATTCACATATACTCAACTGCTATAGCTCATCCTGCCTGTCTATTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATATACTCAACTGCTATAGCTCATCCTGCCTGTCTATTTTAT  50

seq1  CCAGTTGCCTGCAAGTCCCTCATAGAAGAAGCAAGTGAGTTGTATGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGCCTGCAAGTCCCTCATAGAAGAAGCAAGTGAGTTGTATGTACC  100

seq1  TCGCTCTCGTTGCAGCAGAAAATACTGGAGAGGGTATAGAACTGGGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCTCGTTGCAGCAGAAAATACTGGAGAGGGTATAGAACTGGGGGTC  150

seq1  CAGGTCAGCCATGGCTGGAGCTGGGTTGAACAAGGTTTTCACTGCAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGCCATGGCTGGAGCTGGGTTGAACAAGGTTTTCACTGCAAAGG  200

seq1  AATGGAAAAGGAGCTCAATGGTCATCATTTTAAAATATTGATTTAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAGGAGCTCAATGGTCATCATTTTAAAATATTGATTTAGTTCT  250

seq1  TTTACTTCTCTTTTAGGCTAGATGTAAAGTAATGGGGTTGGTGTGCGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTCTTTTAGGCTAGATGTAAAGTAATGGGGTTGGTGTGCGTAC  300

seq1  AGACTCTAAGGGAGAGAGAGCTGAGGACCGTCATTTTCACACTCACCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTAAGGGAGAGAGAGCTGAGGACCGTCATTTTCACACTCACCAGA  350

seq1  TAAAAATCATTTATTAAACCACAGATACAGAAAGGCTTGGGATGTCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCATTTATTAAACCACAGATACAGAAAGGCTTGGGATGTCAGTC  400

seq1  TTCATGACAGCCTGGTATCAATCCTTTCGTTTATCCATTTCCTCTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACAGCCTGGTATCAATCCTTTCGTTTATCCATTTCCTCTATTTT  450

seq1  TTTACCTTCTCACTTCAGCTTCAAGGGCAAGCATCATATTTACAACTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTCTCACTTCAGCTTCAAGGGCAAGCATCATATTTACAACTAAC  500

seq1  ATGAGTCTACAGGTCAGGTGAGGACAACAAGAACATTAAAGCAAAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCTACAGGTCAGGTGAGGACAACAAGAACATTAAAGCAAAAGTGT  550

seq1  GGTGTGGAAGAACATGTATGAGTTTGGATGGAACAGTGAACACTTCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGAAGAACATGTATGAGTTTGGATGGAACAGTGAACACTTCTAGA  600

seq1  GGCCAATTTAAGTGCTTATCTGTGGGGTGGGTTCAGAGAAGAAAAAAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATTTAAGTGCTTATCTGTGGGGTGGGTTCAGAGAAGAAAAAAGCG  650

seq1  ACAGGAAAGAAACAGCAAAGAATCGAGACTTTTCTGATAGTAACAGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAGAAACAGCAAAGAATCGAGACTTTTCTGATAGTAACAGTATG  700

seq1  TAGG-AAACTGAGGTAAATATGTGTATTAGATAGACCCAGGTATGCCT-C  748
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGGAAAACTGAGGTAAATATGTGTATTAGATAGACCCAGGTATGCCTCC  750

seq1  CAAAATAGATACAAATTACTCATGCCAACACACACACACACACACACACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGATACAAATTACTCATGCCAACACACACACACACACACACACA  800

seq1  CACACACACACACACACACACACTCTCCTGCCCGCGCATTCTTGGTTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACTCTCCTGCCCGCGCATTCTTGGTTCTG  850

seq1  GATTGAGAAAGGGGGGCAATCTCGTTCAGAGTCTTAGGTGCGAGCTCAGA  898
      |||||||||| |||||  |||||||||||||||||| |||||| ||||||
seq2  GATTGAGAAAAGGGGGGCATCTCGTTCAGAGTCTTA-GTGCGAACTCAGA  899

seq1  CTAGACAACTACAGAGAAGGATGGGTG-GGGGCAGCAGAGCAAGAGCAGG  947
      ||| || |||||||||||||||||||| ||||| |||||||||||||  |
seq2  CTATAC-ACTACAGAGAAGGATGGGTGTGGGGCTGCAGAGCAAGAGCCAG  948

seq1  ACACTGTCACTGCCATTATTACACTGACAGAGGAGAAAAGTAAAAGAGAG  997
      |||||||||||||| ||||||||||||| || ||||||||||||||| | 
seq2  ACACTGTCACTGCCTTTATTACACTGACTGAAGAGAAAAGTAAAAGATAA  998

seq1  ACAAGGCCGAGT  1009
      ||||||||||||
seq2  ACAAGGCCGAGT  1010

seq1: chr5_32160512_32161669
seq2: B6Ng01-112J12.g_66_1224 (reverse)

seq1  CCCA-TCACCCATTAGCCAGAAAGAATTAAGAGCCTCTGTATCCTTAAAG  49
      |||| ||||||| ||||||||||||  || ||||||  |||| | | |||
seq2  CCCACTCACCCA-TAGCCAGAAAGA--TAGGAGCCTTCGTATTCCTTAAG  47

seq1  GATAACACTAGGT-AGAC-TCTTCCTGAAGTGGGAAACATTATAGGCCTT  97
      ||||| ||||||| |||| |||||||||||| || ||||||||  | || 
seq2  GATAA-ACTAGGTAAGACTTCTTCCTGAAGTAGG-AACATTATTAGTCT-  94

seq1  AGGATGGAAAAGATC-TCAGAGATAATAAGACAAGTGAAAAGTCCCACCC  146
        ||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  -AGATGGAAAAGATCTTCAAAGATAATAAGACAAGTGAAAAGTCCCACCC  143

seq1  TCGAT-AAAGT-ACCCAGCAGATGATGGCTTTTGTGGAGTTGGTCTTTGA  194
      ||||| ||||| |||||||||||||||||||||||||||||||||||  |
seq2  TCGATAAAAGTAACCCAGCAGATGATGGCTTTTGTGGAGTTGGTCTTGAA  193

seq1  ACAGCAAATTCACTGAGTTACCATGTTGTAAGAT-AGCAATTCGTGCTCT  243
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGCAAATTCACTGAGTTACCATGTTGTAAGATAAGCAATTCGTGCTCT  243

seq1  AGGTTTTTAGTACTCTGTGGACCACACTGTTAAGGGTGTGGTTCAAGTAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTAGTACTCTGTGGACCACACTGTTAAGGGTGTGGTTCAAGTAT  293

seq1  TTGGAAGAGAAAATAAAATTGTTTTTTTTAAAACCAATT-AAAAGTACCT  342
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGGAAGAGAAAATAAAATTGTTTTTTTTAAAACCAATTAAAAAGTACCT  343

seq1  TCTCATTCTCATTTTAAGCAGCCATCTGCAAGCATATTAATTTTATGATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTCATTTTAAGCAGCCATCTGCAAGCATATTAATTTTATGATT  393

seq1  TCTATGACCTCCCTGTTTGATTATCCAGTGACCTGGTCCAGTAAACATTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACCTCCCTGTTTGATTATCCAGTGACCTGGTCCAGTAAACATTC  443

seq1  GTCAAGCTCTGTCTTCCCTGGAGATATAAGCTGAGAGCATATAAGGCATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTCTGTCTTCCCTGGAGATATAAGCTGAGAGCATATAAGGCATT  493

seq1  TTCCTCTTTTAAACAGTGTTCAGTGAGGAAAGTGTTGTGTTAATATTGTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTTAAACAGTGTTCAGTGAGGAAAGTGTTGTGTTAATATTGTG  543

seq1  AGCACAATTGTCTGAGAACACGGAGAACCTTCATCTGGATCTTTTATAAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATTGTCTGAGAACACGGAGAACCTTCATCTGGATCTTTTATAAC  593

seq1  CATAAAAGGCAATGTGTCATGCTTTCCTGTTTTGCATGGATGAGGAGGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGGCAATGTGTCATGCTTTCCTGTTTTGCATGGATGAGGAGGGA  643

seq1  GTAAAAAACACCAAAATAATTTTTATTGCATAGAAATATTTCCTTCCTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAACACCAAAATAATTTTTATTGCATAGAAATATTTCCTTCCTGT  693

seq1  CGGGTCCGCTCTCGACCAGCAAGAACGATACAACACTTCGGATTCTTCTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCCGCTCTCGACCAGCAAGAACGATACAACACTTCGGATTCTTCTC  743

seq1  AACAGCCTTTATTGCAGTAATGCCTCAATGCTGCTACGGGGACCCCGGGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTTTATTGCAGTAATGCCTCAATGCTGCTACGGGGACCCCGGGC  793

seq1  ACCCAGGGAGGTCTGCTTACATACTCTCAGCCCCCATCCACTCACGGCAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGAGGTCTGCTTACATACTCTCAGCCCCCATCCACTCACGGCAG  843

seq1  GCCACGCCACCTCACCAGGCACGCAGCTTCAGCCAATCAGGGCGGCAGGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGCCACCTCACCAGGCACGCAGCTTCAGCCAATCAGGGCGGCAGGG  893

seq1  GCATGTCTCCACCAAATATGGACTTGTTTACACCACCAGCATCATGGTGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTCCACCAAATATGGACTTGTTTACACCACCAGCATCATGGTGC  943

seq1  ACCTGCGGAGCTCTCAAGATGGCCATGGCTTATTTTCAGGTGTATAAGGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCGGAGCTCTCAAGATGGCCATGGCTTATTTTCAGGTGTATAAGGA  993

seq1  AGTCAGGTGCAAGTCATAAGACTTAGCTGCAGTCCCGGGCACCATCTTGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTGCAAGTCATAAGACTTAGCTGCAGTCCCGGGCACCATCTTGG  1043

seq1  GACTGCTGCCACACCCGCTCGTCACACTTTCCCTGCAGTTGGAGAGGCAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGCCACACCCGCTCGTCACACTTTCCCTGCAGTTGGAGAGGCAG  1093

seq1  TAATGAGCCTGTGAAGTAGGATTCCTATAGCAGGGGACAGGAGGCAGGGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGCCTGTGAAGTAGGATTCCTATAGCAGGGGACAGGAGGCAGGGG  1143

seq1  AATGTGGTGGGAATTC  1158
      ||||||||||||||||
seq2  AATGTGGTGGGAATTC  1159