BAC Information

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BAC

Clone NameB6Ng01-112J21
Chromosome5 (Build37)10 (Build37)
Map Location 15,112,619 - 15,113,38643,957,571 - 43,958,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112J21.bB6Ng01-112J21.g
ACCDH918635DH918636
length7161,132
definitionDH918635|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J21, 5' end.DH918636|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,112,619 - 15,113,386)(43,957,571 - 43,958,737)
sequence
gaattcctcttctcagttacaactgggtctttgtcaagttgataagattg
caaaaacatatcgtgcaagtgaaacggaagcagcattgaaagtctgagta
gctggtgggcatcccggcacatgtgcctgtgggtagctgacagatcagct
ggtttaaaagcaaggctggtggtctagtcaatcatggtcgctgttctggt
gctaaaccagattatggagaaagctctattgttgttaagacttgagagga
gcttggtggctgattatgggatggatccccgggtggggtagtctctggat
ggtccatcctttcgtcttagctttgtctctgtaactccttccatgggtat
tttgttccctattctgacactactgcatatgccagcaagattttgctgaa
aggaccttgatatagctgtcttgtgaggctatgccagtatggcaaacaga
agtggatgctcacagtcatttataggatggagcacagggcctccaatgga
gaagctagagaaagcacccaaggagctgaagggatctgcaaccctatagg
tggaacaacaatatgaactaaccagtacccccagagcttgtgtctctagc
tgcatatgtagcagaagatggcctagtcagctatcattgggaagagaggc
ccctaggtcttgcaaactttatatgccgcagtacagggccaagaaatggg
agtgggtgggtggggg
gaattcacatggattctaaaactattttaccctcatttgagcatatgttg
ttgctgttgtatttacataactctttgcaacaaccacacaagatgtgccc
tggcaagccgtcaacctggtaactctctttctgaatttggaggacttgga
attctcaagttactaaaatttactttaatgcttaggaacgtgcccactta
ataatcattttatttatttgtgtttattggacaatgtttacataattgtg
atcatttcctcatttatgtaactaacattttttttagatttttcaaattt
ttcattttattaaaaaagagagaatcattgtctacaaattcttttatgtc
caactatgcaaatacaacagcaagcactctggaaattctatgatggttct
aacaatttcaggaatttccaacaggacacataacaagaaaaatccatata
gtacaagtcttaggtgttagctgaattttcaaatcagaaagcaaagagaa
gaatttacattttcagtaactttaggatctgtgagtgttgttaatttaaa
taccgttatgaggagtccaggtacagcaggatattaggccatgcaattgt
atagggagatacagaagctacatagtacttcaagtgttgctatcatatat
gtctaagtgacattttacagattaatgccaagtaaaatcaaaatatagtc
tcctacccattacatcttaaaacacaatgatctatcaacagttgccattt
cacagcaaaaagaaagcagtaggtataaattgaacacagaactgcttctc
ttgtaagaaatgaacacagatatatagatacatgtatacttatacagtct
ctttgaaattcaaggtggttaatttgctttactaccatataaaaacaatc
tcgctgtggtcaggaaaaaagctcattttccacatttaaaagtacattgg
ccaggcatggtggcgcatgcctttaatcccagctctggggagcagaggca
agcagatttctgagttgagccagctggtctacaaagtgacttccagggca
gtcagggctattatacagaaatccttgtctagaaaaacccaaaaaaagca
cacattgtctctgcagaatcacatcatagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15112619_15113386
seq2: B6Ng01-112J21.b_1_764

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA  50
                                                      ||
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA  50

seq1  ATTCCTCTTCTCAGGTACAACTGGGTCTTTGTCAAGTTGATAA-AATGCA  99
      |||||||||||||| |||||||||||||||||||||||||||| | ||||
seq2  ATTCCTCTTCTCAGTTACAACTGGGTCTTTGTCAAGTTGATAAGATTGCA  100

seq1  AGAAACATATCGTGCAAATGAAACGGAAGCAGCATTGAAAGTCTGAGTAG  149
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  A-AAACATATCGTGCAAGTGAAACGGAAGCAGCATTGAAAGTCTGAGTAG  149

seq1  CCGGTGGGCATCCCTGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTG  199
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGCATCCCGGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTG  199

seq1  GTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTAGTG  249
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTGGTG  249

seq1  CTAAACCAGATTCTGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAG  299
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAGATTATGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAG  299

seq1  CTTGGTGGCTGATTATGGGATGGATCATCGGGTGGGGTAGTCTCTGGATG  349
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  CTTGGTGGCTGATTATGGGATGGATCCCCGGGTGGGGTAGTCTCTGGATG  349

seq1  GTCCATCCTTTCTTCTTAGCTTTGTCTCCGTAACTCCTTCCATGGCTTTT  399
      |||||||||||| ||||||||||||||| |||||||||||||||| | ||
seq2  GTCCATCCTTTCGTCTTAGCTTTGTCTCTGTAACTCCTTCCATGGGTATT  399

seq1  TTGTTCCCTATTCTGACACTACTGCATATGCCAGCAAGATTTTGCTGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCTATTCTGACACTACTGCATATGCCAGCAAGATTTTGCTGAAA  449

seq1  GGACCTTGATATAGCTGTCTTGTGAGGCTATGCCAGTGCCTGGCAAACAC  499
      |||||||||||||||||||||||||||||||||||||   ||||||  ||
seq2  GGACCTTGATATAGCTGTCTTGTGAGGCTATGCCAGT--ATGGCAA--AC  495

seq1  AGAAGTGGATGCTCACAGTCATCTATAGGATGGAGCACAGGGCCTCCAAT  549
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAAGTGGATGCTCACAGTCATTTATAGGATGGAGCACAGGGCCTCCAAT  545

seq1  GGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTAT  595

seq1  AAGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCT  649
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCT  645

seq1  AGCTGCATATGTAGCAGAAGATGGCCTAGTCAGCCAGCATTGGGAAGAGA  699
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  AGCTGCATATGTAGCAGAAGATGGCCTAGTCAGCTATCATTGGGAAGAGA  695

seq1  GGCCCCTAGGTCTTGCAAACTTTATATGCCGCAGTACAGGGCCAAGAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTAGGTCTTGCAAACTTTATATGCCGCAGTACAGGGCCAAGAAAT  745

seq1  AGGAGTGGGTGGGTGGGGG  768
       ||||||||||||||||||
seq2  GGGAGTGGGTGGGTGGGGG  764

seq1: chr10_43957571_43958737
seq2: B6Ng01-112J21.g_69_1199 (reverse)

seq1  GGTCTATGGATGTGATTCCTTGCCAAGAGACAATGTGTACTTTTTAAAAA  50
      ||||||| ||||||||||  |||  ||||||||||||| |||        
seq2  GGTCTAT-GATGTGATTC--TGC--AGAGACAATGTGTGCTT--------  37

seq1  ATTTTTTGGTTTTTCGAGAC-AGGGTTTCTCTGT-ATAGCCCTGGCTGTC  98
       ||||| |||||||| |||| ||| ||||| | | ||||||||| ||| |
seq2  -TTTTTGGGTTTTTCTAGACAAGGATTTCTGTATAATAGCCCTGACTGCC  86

seq1  CTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCTG  148
      |||||| |||||||||||||||                        ||||
seq2  CTGGAAGTCACTTTGTAGACCA------------------------GCTG  112

seq1  GCCTCGAACTCAGAAATCTGCCTGCCTCTGCCACCCGAGTGCTGGGATTA  198
      | ||| ||||||||||||||| |||||||| | ||| || ||||||||||
seq2  G-CTC-AACTCAGAAATCTGCTTGCCTCTG-CTCCCCAGAGCTGGGATTA  159

seq1  AAGGTGTGCGCCACCACACCCGGCCAATGTGTACTTTTTAAACATGGCAA  248
      ||||  ||||||||||  || ||||||  ||||| |||||||  ||| ||
seq2  AAGGCATGCGCCACCATGCCTGGCCAA--TGTAC-TTTTAAATGTGGAAA  206

seq1  ATGAGATTTTTTCCCTGACCACAGTGAGCTTGTTTTTAATATGCTGGTAA  298
      ||||| |||||| ||||||||||| ||| |||||||| ||||| | ||||
seq2  ATGAGCTTTTTT-CCTGACCACAGCGAGATTGTTTTT-ATATGGTAGTAA  254

seq1  ATCAAATTAACCACCTTGAATTTCAAAGAGAATGTATAAGTATACATATA  348
      | ||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  AGCAAATTAACCACCTTGAATTTCAAAGAGACTGTATAAGTATACATGTA  304

seq1  TCTATATATCTGTGTTCATTTCTTACAAGAGAAGTAGTTCTGTGTTCAAT  398
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTATATATCTGTGTTCATTTCTTACAAGAGAAGCAGTTCTGTGTTCAAT  354

seq1  TTATACGTACTGATTGCTTTCTGCTATGAAATGGCAACTGTTGATAGATC  448
      |||||| ||||| || |||| |||| ||||||||||||||||||||||||
seq2  TTATACCTACTGCTTTCTTTTTGCTGTGAAATGGCAACTGTTGATAGATC  404

seq1  ATTGTGTTTTAAGATGTAATGGGTAGGGGACTATATTTTGATTTTACCTG  498
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  ATTGTGTTTTAAGATGTAATGGGTAGGAGACTATATTTTGATTTTACTTG  454

seq1  GCTTTAATCTGTAAAATGTCACTTAGATATATAGTATAGCAACACTTGAA  548
      || |||||||||||||||||||||||| |||||  |||||||||||||||
seq2  GCATTAATCTGTAAAATGTCACTTAGACATATATGATAGCAACACTTGAA  504

seq1  GTACTATGTAGCTTCTGTATCTCCCTATACAATTGCATGGTCTAATATCC  598
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTACTATGTAGCTTCTGTATCTCCCTATACAATTGCATGGCCTAATATCC  554

seq1  TGCTGTACCTGAACTCCTCATAACTGTATTTAAATTAACAACACTCACAG  648
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  TGCTGTACCTGGACTCCTCATAACGGTATTTAAATTAACAACACTCACAG  604

seq1  ATCCTAAAGTTACTGAAAATTTAAATTCTTAGCTTTACTTTCTGATTTGA  698
      |||||||||||||||||||| |||||||||  |||| |||||||||||||
seq2  ATCCTAAAGTTACTGAAAATGTAAATTCTTCTCTTTGCTTTCTGATTTGA  654

seq1  AAATTCAGTTAACACCTAAGATTTGTTCTATATTAATTTTTCTTGTTATG  748
      |||||||| |||||||||||| |||| ||||||  |||||||||||||||
seq2  AAATTCAGCTAACACCTAAGACTTGTACTATATGGATTTTTCTTGTTATG  704

seq1  TGTCCTGTTGGAAATTCCTGAAATTGTGAGCACCATCATAGAACTTCCCA  798
      ||||||||||||||||||||||||||| || |||||||||||| || |||
seq2  TGTCCTGTTGGAAATTCCTGAAATTGTTAGAACCATCATAGAA-TTTCCA  753

seq1  GAGTACTTGGTGCTGTATTTGCATAGTTGGACATAAAAGAATTTGTAGAC  848
      |||| |||| || |||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTTGCTGTTGTATTTGCATAGTTGGACATAAAAGAATTTGTAGAC  803

seq1  AATGATTCTCTCTTTTTTAATAAAA---------TGAAAAATCTGAAAAA  889
      |||||||||||||||||||||||||         |||||||||| |||||
seq2  AATGATTCTCTCTTTTTTAATAAAATGAAAAATTTGAAAAATCTAAAAAA  853

seq1  AATGTTAGTTACATAAATGAGGAAATGATCACAATTATGTAAACATTATC  939
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATGTTAGTTACATAAATGAGGAAATGATCACAATTATGTAAACATTGTC  903

seq1  CAATAAACACAAATAAATAAAATGATTAATAAGTGGGCACATTCCCAAGC  989
      |||||||||||||||||||||||||||| ||||||||||| |||| ||||
seq2  CAATAAACACAAATAAATAAAATGATTATTAAGTGGGCACGTTCCTAAGC  953

seq1  ATTCAAGTACATTTTAGCAACTTGAGAATTCCAAGTCCTCCAAATGCAGA  1039
      ||| ||||| ||||||| ||||||||||||||||||||||||||| ||||
seq2  ATTAAAGTAAATTTTAGTAACTTGAGAATTCCAAGTCCTCCAAATTCAGA  1003

seq1  AAGAGAGTTACCAGGTTGACGGCTTGCCAGGACACATCTTGTGTGGTTGC  1089
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  AAGAGAGTTACCAGGTTGACGGCTTGCCAGGGCACATCTTGTGTGGTTGT  1053

seq1  TGCAAAGAGTCATGCAAATGCAACAGCAACAACATATGCTCAAATGAGGG  1139
      |||||||||| ||| |||| ||||||||||||||||||||||||||||||
seq2  TGCAAAGAGTTATGTAAATACAACAGCAACAACATATGCTCAAATGAGGG  1103

seq1  TAAAATAGTTTTAGAATCTATGTGAATT  1167
      |||||||||||||||||| |||||||||
seq2  TAAAATAGTTTTAGAATCCATGTGAATT  1131