BAC Information

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BAC

Clone NameB6Ng01-112M02
Chromosome5 (Build37)
Map Location 93,373,835 - 93,516,712
singlet/doubletdoublet
Overlap geneShroom3, LOC623798, Ankrd56
Upstream geneRchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik
Downstream geneSept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112M02.bB6Ng01-112M02.g
ACCDH918736DH918737
length9551,161
definitionDH918736|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M02, 5' end.DH918737|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,515,752 - 93,516,712)(93,373,835 - 93,374,994)
sequence
gaattctgtatgtgtgctgtggtacacacacacacacacacacacacaca
aattaattaattaattaattaattaaatgtaaaaattaagtctgtatttt
ttgttgttattttgtatataatacaaggtaagaatgggtttggcatttgc
atttctttcttcatcatatgtaggaaagtctccccctgccctgcccctgt
cccccatctcccaccactgaattccttttgtacctttgtcaaaaattcat
tcatcagaggcaataataataatgacaccttagtgattaacttgctctca
cacattaggatgagtgtgggcctctggccttgtttcactgatttacattc
ttttcattctgtcaaggcgagcctacctcaatcatggtagccttaggtgt
taaacacaggacaaaatgacttctccaactctctaatgtcttttctatgt
tgcttgactaccctagttcccttgcctttctttctaaacacatcctgcag
caagctactgaaattctgcccccaaaatgttgaggttctccctgaaattg
catgaaattgatagcataaggagaattggcttttagcactatcaaatatt
ccagtcataatatatgctggctgttactttaaaaattaagtaagtgttga
gaggctgtggagatggcccagagggtaactaactgcttcccatggagctc
gtaccctcaacacctttgtaagcactgaccatgacagcatacacctgcaa
tagtgatgcttagaagtgaagacaggctgggcgtggtggcgcacaccttt
gatcccagcactcgggaggcagaggcaggcagatttctgagttcaaggcc
acctggtctataaaatgagttccaggacagccaaagctatacagagaaac
cctgtctcgaaaaccaggagagagagagaagaagagatgaggaggaggag
gagta
gaattctcctgttacctgcggtctttgttaaggtttagttaataaagagt
ttttctcgtagcttcagtggactcaaacaaggtaagtaaccttgtacagg
ctgagttaaaaccgaaattcctcagagtttatttctggcactgtggggag
tgcactgctctgtgagcatccttctcaaaatgctgtcagttgggtacttt
ccctcaaacaagtcatcccgagaatcacaaataatggttggtaatttgga
ggcctgaagcaataactgcacgagaccaggatgttgagctatgaatggcc
tgaaagtgactccaaagcttgataaggcggggcttctccctggctacctt
tgtattctctctgaaacacgcagcaccctgcacccccttctcttcattta
aagagtacagttccagaacaaagggatgttgggtagggatggagcccttg
ggctcattatgttccactcaccatcagctagaccaagcatcttaaagtgc
tgcactccccccagctaccccccccctgaaaagctgcaaaaaagcaccca
gatgtttctgcctttgagatagaatgagatacgtcttcattacttaggtt
aaatgtctagggtctgcagaggcagtggctaggtggttaagagcacaggc
tgctcttgcagaggttggaagcttcaggtcccacacccgtatggcagttg
gtaagtagctgaggatcaaaagtgtttggatgtaggctttgattctgtgg
gtacagccagtaagctgttggtagcacccgagactaaacaatatttaagc
cccagggtaattgacagagctgacattctgtgaattgtgaagttacaaat
agccaacactaatcaagcttttactgtatgccagtcactgacttggcctt
catctgtgcagtgaggttggtactgtaacttgttatgttacagaggggca
cctagaaagggtaggaaccagcccaaggtagtcgaaggatatgtttgaga
cactctgccttcctcgaggcttaagtggtttaaccatgctgtttccttga
aaggcagagctggcatggggagaagggagtgagacttaatttctcatatc
tgagaaaatcaagtggcaatggaattccattttagttctattcaggaata
tacttatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_93515752_93516712
seq2: B6Ng01-112M02.b_46_1000 (reverse)

seq1  TCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTGGTTT  50
      | |||||||||||||    || || |||||||||   |||  | ||| ||
seq2  TACTCCTCCTCCTCC----TCATC-TCTTCTTCTCTCTCTCTCCTGG-TT  44

seq1  TTCGAGACAGGGTTTCTCTGTATAGCTTTGGCTGTCCTGGAACTCATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGACAGGGTTTCTCTGTATAGCTTTGGCTGTCCTGGAACTCATTTT  94

seq1  ATAGACCAGGTTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCG  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCAGG-TGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCG  143

seq1  AGTGCTGGGATCAAAGGTGTGCGCCACCACGCCCAGCCTGTCTTCACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATCAAAGGTGTGCGCCACCACGCCCAGCCTGTCTTCACTTC  193

seq1  TAAGCATCACTATTGCAGGTGTATGCTGTCATGGTCAGTGCTTAC-AAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAGCATCACTATTGCAGGTGTATGCTGTCATGGTCAGTGCTTACAAAGG  243

seq1  TGTTGAGGGTACGAGCTCCATGGGAAGCAGTTAGTTACCCTCTGGGCCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGGTACGAGCTCCATGGGAAGCAGTTAGTTACCCTCTGGGCCAT  293

seq1  CTCCACAGCCTCTCAACACTTACTTAATTTTTAAAGTAACAGCCAGCATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGCCTCTCAACACTTACTTAATTTTTAAAGTAACAGCCAGCATA  343

seq1  TATTATGACTGGAATATTTGATAGTGCTAAAAGCCAATTCTCCTTATGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGACTGGAATATTTGATAGTGCTAAAAGCCAATTCTCCTTATGCT  393

seq1  ATCAATTTCATGCAATTTCAGGGAGAACCTCAACATTTTGGGGGCAGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTCATGCAATTTCAGGGAGAACCTCAACATTTTGGGGGCAGAAT  443

seq1  TTCAGTAGCTTGCTGCAGGATGTGTTTAGAAAGAAAGGCAAGGGAACTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGCTTGCTGCAGGATGTGTTTAGAAAGAAAGGCAAGGGAACTAG  493

seq1  GGTAGTCAAGCAACATAGAAAAGACATTAGAGAGTTGGAGAAGTCATTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCAAGCAACATAGAAAAGACATTAGAGAGTTGGAGAAGTCATTTT  543

seq1  GTCCTGTGTTTAACACCTAAGGCTACCATGATTGAGGTAGGCTCGCCTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGTTTAACACCTAAGGCTACCATGATTGAGGTAGGCTCGCCTTG  593

seq1  ACAGAATGAAAAGAATGTAAATCAGTGAAACAAGGCCAGAGGCCCACACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGAAAAGAATGTAAATCAGTGAAACAAGGCCAGAGGCCCACACT  643

seq1  CATCCTAATGTGTGAGAGCAAGTTAATCACTAAGGTGTCATTATTATTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAATGTGTGAGAGCAAGTTAATCACTAAGGTGTCATTATTATTAT  693

seq1  TGCCTCTGATGAATGAATTTTTGACAAAGGTACAAAAGGAATTCAGTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGATGAATGAATTTTTGACAAAGGTACAAAAGGAATTCAGTGGT  743

seq1  GGGAGATGGGGGACAGGGGCAGGGCAGGGGGAGACTTTCCTACATATGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGGGGGACAGGGGCAGGGCAGGGGGAGACTTTCCTACATATGAT  793

seq1  GAAGAAAGAAATGCAAATGCCAAACCCATTCTTACCTTGTATTATATACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAAATGCAAATGCCAAACCCATTCTTACCTTGTATTATATACA  843

seq1  AAATAACAACAAAAAATACAGACTTAATTTTTACATTTAATTAATTAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAACAAAAAATACAGACTTAATTTTTACATTTAATTAATTAATT  893

seq1  AATTAATTAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTACCACAGCACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTACCACAGCACA  943

seq1  CATACAGAATTC  961
      ||||||||||||
seq2  CATACAGAATTC  955

seq1: chr5_93373835_93374994
seq2: B6Ng01-112M02.g_68_1228

seq1  GAATTCTCCTGTTACCTGCGGTCTTTGTTAAGGTTTAGTTAATAAAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTTACCTGCGGTCTTTGTTAAGGTTTAGTTAATAAAGAGT  50

seq1  TTTTCTCGTAGCTTCAGTGGACTCAAACAAGGTAAGTAACCTTGTACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCGTAGCTTCAGTGGACTCAAACAAGGTAAGTAACCTTGTACAGG  100

seq1  CTGAGTTAAAACCGAAATTCCTCAGAGTTTATTTCTGGCACTGTGGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTAAAACCGAAATTCCTCAGAGTTTATTTCTGGCACTGTGGGGAG  150

seq1  TGCACTGCTCTGTGAGCATCCTTCTCAAAATGCTGTCAGTTGGGTACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCTCTGTGAGCATCCTTCTCAAAATGCTGTCAGTTGGGTACTTT  200

seq1  CCCTCAAACAAGTCATCCCGAGAATCACAAATAATGGTTGGTAATTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAACAAGTCATCCCGAGAATCACAAATAATGGTTGGTAATTTGGA  250

seq1  GGCCTGAAGCAATAACTGCACGAGACCAGGATGTTGAGCTATGAATGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAAGCAATAACTGCACGAGACCAGGATGTTGAGCTATGAATGGCC  300

seq1  TGAAAGTGACTCCAAAGCTTGATAAGGCGGGGCTTCTCCCTGGCTACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGACTCCAAAGCTTGATAAGGCGGGGCTTCTCCCTGGCTACCTT  350

seq1  TGTATTCTCTCTGAAACACGCAGCACCCTGCACCCCCTTCTCTTCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTCTCTGAAACACGCAGCACCCTGCACCCCCTTCTCTTCATTTA  400

seq1  AAGAGTACAGTTCCAGAACAAAGGGATGTTGGGTAGGGATGGAGCCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACAGTTCCAGAACAAAGGGATGTTGGGTAGGGATGGAGCCCTTG  450

seq1  GGCTCATTATGTTCCACTCACCATCAGCTAGACCAAGCATCTTAAAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTATGTTCCACTCACCATCAGCTAGACCAAGCATCTTAAAGTGC  500

seq1  TGCACTCCCCCCAGCTACCCCCCCCCTGAAAAGCTGCAAAAAAGCACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCCCCCCAGCTACCCCCCCCCTGAAAAGCTGCAAAAAAGCACCCA  550

seq1  GATGTTTCTGCCTTTGAGATAGAATGAGATACGTCTTCATTACTTAGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCTGCCTTTGAGATAGAATGAGATACGTCTTCATTACTTAGGTT  600

seq1  AAATGTCTAGGGTCTGCAGAGGCAGTGGCTAGGTGGTTAAGAGCACAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTAGGGTCTGCAGAGGCAGTGGCTAGGTGGTTAAGAGCACAGGC  650

seq1  TGCTCTTGCAGAGGTTGGAAGCTTCAGGTCCCACACCCGTATGGCAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGCAGAGGTTGGAAGCTTCAGGTCCCACACCCGTATGGCAGTTG  700

seq1  GTAAGTAGCTGAGGATCAAAAGTG-TTGGATGTAGGC-TTGATTCTGTGG  748
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAAGTAGCTGAGGATCAAAAGTGTTTGGATGTAGGCTTTGATTCTGTGG  750

seq1  GTACAGCCAGTAAGCTGTTGGTAGCACCCGAGACTAAACAATATTTAAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCCAGTAAGCTGTTGGTAGCACCCGAGACTAAACAATATTTAAGC  800

seq1  CCCAGGGTAATTGACAGAGCTGACATTCTGTGAATTGTGAAGTTACAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTAATTGACAGAGCTGACATTCTGTGAATTGTGAAGTTACAAAT  850

seq1  AGCCAACACTAATCAAGCTTTTACTGTATGCCAGTCACTGACTTGGCCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACACTAATCAAGCTTTTACTGTATGCCAGTCACTGACTTGGCCTT  900

seq1  CATCTGTGCAGTGAGGTTGGTACTGTAAC-TGTTATGTTACAGAGGGGCA  947
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATCTGTGCAGTGAGGTTGGTACTGTAACTTGTTATGTTACAGAGGGGCA  950

seq1  CCTAGAAAGGGTAGGAAACCAGCCCAAGGTAGTCG-AGGATAATGTTTGA  996
      ||||||||||||||| ||||||||||||||||||| ||||| ||||||||
seq2  CCTAGAAAGGGTAGG-AACCAGCCCAAGGTAGTCGAAGGAT-ATGTTTGA  998

seq1  GACACTCTGCCTTCCTCGAGGCTTAAGTGGTTAAACCATGCTGTTTCCTT  1046
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GACACTCTGCCTTCCTCGAGGCTTAAGTGGTTTAACCATGCTGTTTCCTT  1048

seq1  GAAAGGCAGAGGCTGGCATGGGGAGAAGGTAGTGAGACCTAAATGTCTCA  1096
      |||||||||| |||||||||||||||||| ||||||| || ||| |||||
seq2  GAAAGGCAGA-GCTGGCATGGGGAGAAGGGAGTGAGA-CTTAATTTCTCA  1096

seq1  TATCTGAGAATATCAAGTGGTAAATGGATTTCATTTTAGTTCTTATCAGG  1146
      |||||||||| ||||||||| ||  | ||| ||||||||||||  |||||
seq2  TATCTGAGAAAATCAAGTGGCAATGGAATTCCATTTTAGTTCTATTCAGG  1146

seq1  TAT-TACTTATATTT  1160
       || |||||||||||
seq2  AATATACTTATATTT  1161