BAC Information

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BAC

Clone NameB6Ng01-113C01
Chromosome5 (Build37)
Map Location 14,958,871 - 15,019,566
singlet/doubletdoublet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113C01.bB6Ng01-113C01.g
ACCDH919002DH919003
length9771,116
definitionDH919002|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C01, 5' end.DH919003|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,018,586 - 15,019,566)(14,958,871 - 14,959,986)
sequence
gaattcaatgaacatttatcatgatttcaattttattgttcagaattaat
gttcaaaaattaagtgattatctgatgttatttttatgaaacatgttggc
atttgttgacaatgatgaattgaaccatctctcttattaaatttcaacaa
ttcaaatgcaagttttatcacttattaacttatttgtctagtagcactaa
ccagctaaaattaattttagaaatctttttaacataaaataataaataaa
ttgataacaagcttcataccacatttttgtttgcctttaatgaaactctt
ctgaacacactctgacatttcctatctaattctcatcccacaggtattca
tttatcactctattaatatgcacatcagtaatggtgtcctaatctatctc
accgtgctatcaattaggagaatatccttgaacatagggtggggagattt
gctaatacacaattttttgaaccttgagacctctagtagtcctttgagta
atgtaatttctaacaatttttctatttaaaatgcaccttctgaaaataaa
actctgaaagattaagtataatattaacattaaactcataggtcactatg
ttggttcatactatgacataaggcttacaaatgcttctgtatgtatgtac
ttattcatttacttacttgtttattttctctaacatcctgctgcactggg
attcctgatgattggatttcagttaccagcatgcagagatcctaaagtta
atgacatattaaacatttagctttactttctattctgaaaattcagttaa
tgctattatttgaactttattgatctttgagacaaatctcattatgtttc
tcagctggtctcaaatttgtatatttcctgcctcagggtgctggctcctg
gaattataggcaagcagtagtgtggtggctgatatgcttgacccagattg
cactgttaggaggtattgagtaggtat
gaattctgcactaaacccatctgttcctgggatttgtttggttgggagac
tattaatgactgcttctaattctttaagggttatgggacagccttagctc
aggggcatagatagagacccaaccttaccagttctcctgtctggtggcac
agtccaatttgccccacaatgaaatgtgtatgttgtagattaaagaatat
attgaaattatgagcagtaaaatgaaaatcattcattgagagaaaaaaaa
attgtcttcaagtggtcattcttaatccaacctttttacaaaaccttaat
aaatattcttacaaaataagcatgaaattaattgtaaaagaagaaagaaa
tgtttctggcctcttgccataattgattttcaaattttttcttattaatc
ttaattagaaattcagagaaagtagacttgagaaacagtttctagttgat
atgtaaatggtacttaacaggtcacagagatggctgaaggagcaaggacc
tagaggatattcaaagaatggttcattattggccaagtggtgcttaacac
tctcataagtaacttctctcacctctaatcatgtaactatggttctatac
tatatgtaatccatatctgtttctttttatcaatatcctttaagactacc
cagcactatatattttcaatgtaataattgagcaatatgctcaagtgtcc
tgttgcattatgtgtaaaaatttgcaataatctttgagaataaaaaaatt
ttattttttgcccagatataatatgtcttagttagggttttgctgctgta
aacagacactatgaccatggcaactcttaaaaggagaccatttaattggg
cctgtcctacagttcagaggttcagtccattatcatcaaggcaggagcat
ggcagtgccagggcaagcatgttcaagaggagctgagagttctacatctt
catctgaaggcagtggagaagactggcttccagaagctaggagggaggtc
tcaaagcatgacgactttcttcctccaacaaggccataacctactccaat
actcctacagggtcatcctgggcctagcgattattcacgctccacaccta
ctacttgttctataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15018586_15019566
seq2: B6Ng01-113C01.b_47_1023 (reverse)

seq1  ATACCTACTCCATACCTCCTAACAGTGCCATCCTGGGCCAAGCATATTCA  50
      |||||||||| ||||||||||||||||| || ||||| |||||||||   
seq2  ATACCTACTCAATACCTCCTAACAGTGCAAT-CTGGGTCAAGCATAT--C  47

seq1  AGCCACCACACTACTACTTGTCTATAATCCCAGGAGCCAGCACCCTGAGC  100
      ||||||||||||||| |||| ||||||| |||||||||||||||||||| 
seq2  AGCCACCACACTACTGCTTGCCTATAATTCCAGGAGCCAGCACCCTGAGG  97

seq1  CAGGAATATTACAAATTTGAGACCAGCCTGAGAAACATAATGAGATTTGT  150
      ||||||   ||||||||||||||||| |||||||||||||||||||||||
seq2  CAGGAAATATACAAATTTGAGACCAG-CTGAGAAACATAATGAGATTTGT  146

seq1  CTCAAAGATCAATAAAGTTCAAATAATAGCATTAACTGAATTTTCAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGATCAATAAAGTTCAAATAATAGCATTAACTGAATTTTCAGAAT  196

seq1  AGAAAGTAAAGCTAAATGTTTAATATGTCATTAACTTTAGGATCTCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAAAGCTAAATGTTTAATATGTCATTAACTTTAGGATCTCTGCA  246

seq1  TGCTGGTAACTGAAATCCAATCATCAGGAATCCCAGTGCAGCAGGATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTAACTGAAATCCAATCATCAGGAATCCCAGTGCAGCAGGATGTT  296

seq1  AGAGAAAATAAACAAGTAAGTAAATGAATAAGTACATACATACAGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATAAACAAGTAAGTAAATGAATAAGTACATACATACAGAAGCA  346

seq1  TTTGTAAGCCTTATGTCATAGTATGAACCACCGTCGTGACCTATGAGTTT  400
      |||||||||||||||||||||||||||||| | | |||||||||||||||
seq2  TTTGTAAGCCTTATGTCATAGTATGAACCAACATAGTGACCTATGAGTTT  396

seq1  AATGTTAATATTATACTTAATCTTTCAGAGTTTTATTTTCAGAAGGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAATATTATACTTAATCTTTCAGAGTTTTATTTTCAGAAGGTGCA  446

seq1  TTTTAAATAGAAAAATTGTTAGAAATTACATTACTCAAAGGACTATTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTAAATAGAAAAATTGTTAGAAATTACATTACTCAAAGGACTACTAGA  496

seq1  GATCTCAAGTTACAAAAAATTGTGTATTAGCAAATCTCCCCACCCTATGT  550
      | ||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAAGGTTCAAAAAATTGTGTATTAGCAAATCTCCCCACCCTATGT  546

seq1  TCAAGGATATTCTCCTAATTGATAGCACGGTGAGATAGATTAAGATACCA  600
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  TCAAGGATATTCTCCTAATTGATAGCACGGTGAGATAGATTAGGACACCA  596

seq1  TCACTGATGTGCATGTTAATAGAGTGATAAATGAATACCTGTGGGATGAG  650
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTACTGATGTGCATATTAATAGAGTGATAAATGAATACCTGTGGGATGAG  646

seq1  AATTAGATAGGAAATGTCAGAGTGTGTTCAGAAGAGTTTCATTAAAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATAGGAAATGTCAGAGTGTGTTCAGAAGAGTTTCATTAAAGGCA  696

seq1  AACAAAAATGTGCTATGAAGCTTGTTATCAATTTATTTATTATTTCATGT  750
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  AACAAAAATGTGGTATGAAGCTTGTTATCAATTTATTTATTATTTTATGT  746

seq1  AAAAAAGATTTCTAAAATTAATTTTAGCTGGTTAGTGCTACTAGACAAAT  800
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGATTTCTAAAATTAATTTTAGCTGGTTAGTGCTACTAGACAAAT  796

seq1  AAGTTAATAAGTGATAAAACTTGCATTTGAATTGTTGAAATTTAATAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATAAGTGATAAAACTTGCATTTGAATTGTTGAAATTTAATAAGA  846

seq1  GAGATGGTTCAATTCATCATTGTCAACAAATGCCAACATGTTTCATAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTTCAATTCATCATTGTCAACAAATGCCAACATGTTTCATAAAA  896

seq1  ATAACATCAGATAATCACTTAATTTTTGAACATTAATTCTGAACAATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATCAGATAATCACTTAATTTTTGAACATTAATTCTGAACAATAAA  946

seq1  ATTGAAATCATGATAAATGTTCATTGAATTC  981
      |||||||||||||||||||||||||||||||
seq2  ATTGAAATCATGATAAATGTTCATTGAATTC  977

seq1: chr5_14958871_14959986
seq2: B6Ng01-113C01.g_70_1185

seq1  GAATTCAGCACTAAACCCATCTGTTCCTGGGATTTGTTCGGTTGGGTGAC  50
      |||||| ||||||||||||||||||||||||||||||| ||||||| |||
seq2  GAATTCTGCACTAAACCCATCTGTTCCTGGGATTTGTTTGGTTGGGAGAC  50

seq1  TATTAATGACTGCTTCTAATTCTTTAAGGGTTATGGGACAGCCTTAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGACTGCTTCTAATTCTTTAAGGGTTATGGGACAGCCTTAGCTC  100

seq1  AGGGGCATAGATAGAGACCCAACCTTACCAGTTCTCCTGTCTGGTGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATAGATAGAGACCCAACCTTACCAGTTCTCCTGTCTGGTGGCAC  150

seq1  AGTCCACTTTGCCCCACAATGAAATGTGGATGTTGTAGATTAAAGAATAT  200
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTCCAATTTGCCCCACAATGAAATGTGTATGTTGTAGATTAAAGAATAT  200

seq1  ATTGAAA-TATGAGCAGTAAAATGAAAATCATTCATTGAGAG--AAAAAA  247
      ||||||| ||||||||||||||||||||||||||||||||||  ||||||
seq2  ATTGAAATTATGAGCAGTAAAATGAAAATCATTCATTGAGAGAAAAAAAA  250

seq1  ATTGTCTCCAAGTGGTCATTCTTAATCCAACCTTTTTACAAAACCTTAAT  297
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTCAAGTGGTCATTCTTAATCCAACCTTTTTACAAAACCTTAAT  300

seq1  AAATATTCTTACAAAATAAGCATGAAATTAATTGTAAAAGAAGAAAGAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTTACAAAATAAGCATGAAATTAATTGTAAAAGAAGAAAGAAA  350

seq1  TGTTTCTGGCCTCTTGCCATAATTGATTTTCAATTTTTTTCTTATTAATT  397
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  TGTTTCTGGCCTCTTGCCATAATTGATTTTCAAATTTTTTCTTATTAATC  400

seq1  TTAATTAGACATTCAGAGAAAGTAGACTTGAGAAACAGTTTCTAGTTGAT  447
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGAAATTCAGAGAAAGTAGACTTGAGAAACAGTTTCTAGTTGAT  450

seq1  ATGTAAATGGTACTTAACAGGTCACAGAGATGACTGAAGGAGCAAGGACC  497
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGTAAATGGTACTTAACAGGTCACAGAGATGGCTGAAGGAGCAAGGACC  500

seq1  TAGAGGATATTCAAAGAATGGTTCATTATTGGCCAAGTGGTGCTTAACAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGATATTCAAAGAATGGTTCATTATTGGCCAAGTGGTGCTTAACAC  550

seq1  TCTCATAAGTAACTTCTCTCACCTCTAATCATGTAACTATGGTTCTATAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAAGTAACTTCTCTCACCTCTAATCATGTAACTATGGTTCTATAC  600

seq1  TATATGTAATCCATATCTGTTTCTTTTTATCAATATCCTTTAAGACTACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTAATCCATATCTGTTTCTTTTTATCAATATCCTTTAAGACTACC  650

seq1  CAGCACTATATATTTTCAATGTAATAATTGAGCAATATGCTCAAGTGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGCACTATATATTTTCAATGTAATAATTGAGCAATATGCTCAAGTGTCC  700

seq1  TGTTGCATTATGTGTAAAAATTTGCAATAATCTTTGAGAATAAGAAAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTTGCATTATGTGTAAAAATTTGCAATAATCTTTGAGAATAA-AAAAAT  749

seq1  TTTA-TTTTTGCCCAGATATAATATGTCTTAGTTAGGGTTTTGCTGCTGT  796
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTGCCCAGATATAATATGTCTTAGTTAGGGTTTTGCTGCTGT  799

seq1  AAACAGACACTATGACCATGGCAACTCTTAAAAGGAGACCATTTAATTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACACTATGACCATGGCAACTCTTAAAAGGAGACCATTTAATTGG  849

seq1  GCCTGTCCTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGC  896
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCTACA-GTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGC  898

seq1  ATGGCAGTGCCAGGGCAGGCATGGTTCAGGAGGAGCTGAGAGTTCTACAT  946
      ||||||||||||||||| |||| ||||| |||||||||||||||||||||
seq2  ATGGCAGTGCCAGGGCAAGCAT-GTTCAAGAGGAGCTGAGAGTTCTACAT  947

seq1  CTTCATCTGAAGGCCAGTTGGAGAAGACTGGCATCCAGGAAGCTAGGAGG  996
      ||||||||||||| ||| |||||||||||||| |||| ||||||||||||
seq2  CTTCATCTGAAGG-CAG-TGGAGAAGACTGGCTTCCA-GAAGCTAGGAGG  994

seq1  GAGGTCTCAAAGCATGACAGACTTCCTTCCTCCAACAAGGCCAT-ACCTA  1045
      |||||||||||||||||| ||||| ||||||||||||||||||| |||||
seq2  GAGGTCTCAAAGCATGAC-GACTTTCTTCCTCCAACAAGGCCATAACCTA  1043

seq1  CTCCATACCTCCTAACAGTGCCATCCTGGGCCAAGC--ATATTCAAGCCA  1093
      |||||   ||||| |||| | ||||||||||| |||   |||||| | | 
seq2  CTCCAATACTCCT-ACAGGGTCATCCTGGGCCTAGCGATTATTCACG-CT  1091

seq1  CCACA-CTACTACTTG-TCTATAAT  1116
      ||||| |||||||||| ||||||||
seq2  CCACACCTACTACTTGTTCTATAAT  1116