BAC Information

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BAC

Clone NameB6Ng01-113H09
Chromosome5 (Build37)
Map Location 12,675,496 - 12,843,635
singlet/doubletdoublet
Overlap geneLOC668069
Upstream geneLOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d, LOC668015, LOC100042917
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113H09.bB6Ng01-113H09.g
ACCDH919250DH919251
length1,084898
definitionDH919250|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H09, 5' end.DH919251|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,675,496 - 12,676,592)(12,842,738 - 12,843,635)
sequence
gaattctctttaagatgtcactatgcgcatggcattgggggcacatgtag
gaaggaaaggcaaatattgagtctaaagaggagaatttcggactagtata
tcaatggtatttcaacaacaggcaccgtactttacttatcaaattttagg
aggaatattatatgtagaaacacaaaacaggcattaactcttccacccag
tgaacaaattgaaagaacaaaacaacatgataaatgccctaatgcattaa
attaagagaaaaaagaaaacagagcatggcacaaatggtaaacaaagccc
gaagtagaagccaagggtgacagtgatgcttctctgtgtgttgctgctca
gatatttccagtgagtaaactaggatggcttgtttaagttacatcgtcag
aatataatttacttttgcttgttctatgcatgtacatcagttcaaatgat
ttccatattggaataaatgacttggccatagatacaggtggaagaaatct
tcctctggtagttttcctattaattcaaaacagaaagaatctgtctccat
gcaccttttcttcttggggttctttaataattctctccagattcagttgc
cttggagcagctacagctgcaaaacacatccacagggaaaatgagaataa
aggcagaggagtgttcattcagacacttgaacatcttggatatctgtttt
tcttttttttgtttttgttttgttttttttaagtacctgaggaacataat
ctaatagtcagagtgctactcctataagtgagcatgcatatttgcctatg
tgcatgtttgtctgtgtggatgatcatttatgcacatgcagttgtgcatc
catgagtatgtatgtgtgtacattcacagttatatgagtgtgcttatttt
tattctccactgtcattgaagcattgtattgaggagcattggaaacaccc
acataactcataatatttcagaaggaaataatttgaggagagatttgttt
aacaataaaatagttgtataattctatcatatgttcactctggtagagtt
taaagttcaaggggtccctgtgagcttacatttt
gaattcacttttcagctttactacatggtaactatcacaaatgcacatta
gcatccttgtgatatttcatcgagggctcaagtagaatgaattgttttta
ggtgtattaatatttaatcctaattgaattaatgaaaacaaaatttcagg
cacttagggatattgaaatcaattaatatatcagttgttcataaaatttt
acaacatccagatgatgaatgtagaatagcctaaactacaactatgtaac
ccaaatccttaaaatatcttatttcatcacacacacacacatatatatat
atatatatatatatatatatatatatataacatattcttaaatatataga
tacaacctactcagtctcttaggttttattgctatgtatattatataatt
tatttatatccaggatttgccaagagaacaaatatatctagagatatgag
gtagatattaataaatgaaaagtgtctcttccactgaacatggatcaaca
gtcttcagtaaaataactataaataaaatttaccttcaaacaaattcaac
ataaaattacagtaaaataattattttatttataaacaattgggtaattt
tatgtacaattttcaactttcacaattttcttttagaaatattttcttgt
tcttttacatgggggaatggagaatcagggaaattacatcactttcaaaa
ttattaagatactgtttctacactggatcacttcatttgttctgactaaa
tattttgcagttacatgttcttttatttttaatcaaatctcctaaaaatg
agtgtgagataattttgctactgcaaattgatgaaatatatgctcatagc
ttacattcagcacacaaacatctttgtagactttttatttcttcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12675496_12676592
seq2: B6Ng01-113H09.b_50_1133

seq1  GAATTCTCTTTAAGATGTCACTATGCGCATGGCATTGGGGGCACATGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAAGATGTCACTATGCGCATGGCATTGGGGGCACATGTAG  50

seq1  GAAGGAAAGGCAAATATTGAGTCTAAAGAGGAGAATTTCGGACTAGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGGCAAATATTGAGTCTAAAGAGGAGAATTTCGGACTAGTATA  100

seq1  TCAATGGTATTTCAACAACAGGCACCGTACTTTACTTATCAAATTTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGTATTTCAACAACAGGCACCGTACTTTACTTATCAAATTTTAGG  150

seq1  AGGAATATTATATGTAGAAACACAAAACAGGCATTAACTCTTCCACCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATTATATGTAGAAACACAAAACAGGCATTAACTCTTCCACCCAG  200

seq1  TGAACAAATTGAAAGAACAAAACAACATGATAAATGCCCTAATGCATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAATTGAAAGAACAAAACAACATGATAAATGCCCTAATGCATTAA  250

seq1  ATTAAGAGAAAAAAGAAAACAGAGCATGGCACAAATGGTAAACAAAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGAAAAAAGAAAACAGAGCATGGCACAAATGGTAAACAAAGCCC  300

seq1  GAAGTAGAAGCCAAGGGTGACAGTGATGCTTCTCTGTGTGTTGCTGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAGCCAAGGGTGACAGTGATGCTTCTCTGTGTGTTGCTGCTCA  350

seq1  GATATTTCCAGTGAGTAAACTAGGATGGCTTGTTTAAGTTACATCGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCCAGTGAGTAAACTAGGATGGCTTGTTTAAGTTACATCGTCAG  400

seq1  AATATAATTTACTTTTGCTTGTTCTATGCATGTACATCAGTTCAAATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTTACTTTTGCTTGTTCTATGCATGTACATCAGTTCAAATGAT  450

seq1  TTCCATATTGGAATAAATGACTTGGCCATAGATACAGGTGGAAGAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATTGGAATAAATGACTTGGCCATAGATACAGGTGGAAGAAATCT  500

seq1  TCCTCTGGTAGTTTTCCTATTAATTCAAAACAGAAAGAATCTGTCTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGTAGTTTTCCTATTAATTCAAAACAGAAAGAATCTGTCTCCAT  550

seq1  GCACCTTTTCTTCTTGGGGTTCTTTAATAATTCTCTCCAGATTCAGTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTTTCTTCTTGGGGTTCTTTAATAATTCTCTCCAGATTCAGTTGC  600

seq1  CTTGGAGCAGCTACAGCTGCAAAACACATCCACAGGGAAAATGAGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCAGCTACAGCTGCAAAACACATCCACAGGGAAAATGAGAATAA  650

seq1  AGGCAGAGGAGTGTTCATTCAGACACTTGAACATCTTGGATATCTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGAGTGTTCATTCAGACACTTGAACATCTTGGATATCTGTTTT  700

seq1  TCTTTTTTTTGTTTTTGTTTTGTTTTTTTTAAGTACCTGAGGAACATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTGTTTTTGTTTTGTTTTTTTTAAGTACCTGAGGAACATAAT  750

seq1  CTAATAGTCAGAGTGCTACTCCTATAAGTGAGCATGCATATTTGCCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGTCAGAGTGCTACTCCTATAAGTGAGCATGCATATTTGCCTATG  800

seq1  TGCATGTTTGTCTGTGTGGATGATCATTTATGCACATGCAGTTGTGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTTGTCTGTGTGGATGATCATTTATGCACATGCAGTTGTGCATC  850

seq1  CATGAGTATGTATGTGTGTACATTCACAGTTATATGAGTGTGCTTATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTATGTATGTGTGTACATTCACAGTTATATGAGTGTGCTTATTTT  900

seq1  TAATTCTCCACTGTCATTGAAGCATTGTATTGAGGAGCATTGGAAACACC  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ATTCTCCACTGTCATTGAAGCATTGTATTGAGGAGCATTGGAAACACC  949

seq1  CACATAACTCATAAATATTTCAGGAAGGAAATTAATTTGAGGAGAGATTT  1000
      |||||||||||| ||||||||| |||||||| ||||||||||||||| ||
seq2  CACATAACTCAT-AATATTTCA-GAAGGAAA-TAATTTGAGGAGAGA-TT  995

seq1  TGTTTAACAAATAAAAATAGTTGTAATAATTCTATCATATGTTTCACTCT  1050
      ||||||||||   ||||||||||| |||||||||||||||| ||||||||
seq2  TGTTTAACAA--TAAAATAGTTGT-ATAATTCTATCATATG-TTCACTCT  1041

seq1  GGTTAGAGTTTAAAGTTCAAAGTGGTCCCTGTATAATCTTACATTTT  1097
      || ||||||||||||||| ||| ||||||||  | | ||||||||||
seq2  GG-TAGAGTTTAAAGTTC-AAGGGGTCCCTG--TGAGCTTACATTTT  1084

seq1: chr5_12842738_12843635
seq2: B6Ng01-113H09.g_70_967 (reverse)

seq1  AATTGAAGAAATAAAAAGTCTACAAAGATGTTTGTGTTGCTGAATGTTAG  50
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  AATTGAAGAAATAAAAAGTCTACAAAGATGTTTGTG-TGCTGAATGTAAG  49

seq1  CTATGAGCATATATTTCATCAATTTGCAGTAGCAAAATTATCTCACACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGCATATATTTCATCAATTTGCAGTAGCAAAATTATCTCACACTC  99

seq1  A-TTTTAGGAGATTTGATTAAAAATAAAAGAACATGTAACTGCAAAATAT  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGGAGATTTGATTAAAAATAAAAGAACATGTAACTGCAAAATAT  149

seq1  TTAGTCAGAACAAATGAAGTGATCCAGTGTAGAAACAGTATCTTAATAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGAACAAATGAAGTGATCCAGTGTAGAAACAGTATCTTAATAAT  199

seq1  TTTGAAAGTGATGTAATTTCCCTGATTCTCCATTCCCCCATGTAAAAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGTGATGTAATTTCCCTGATTCTCCATTCCCCCATGTAAAAGAA  249

seq1  CAAGAAAATATTTCTAAAAGAAAATTGTGAAAGTTGAAAATTGTACATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATATTTCTAAAAGAAAATTGTGAAAGTTGAAAATTGTACATAA  299

seq1  AATTACCCAATTGTTTATAAATAAAATAATTATTTTACTGTAATTTTATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCAATTGTTTATAAATAAAATAATTATTTTACTGTAATTTTATG  349

seq1  TTGAATTTGTTTGAAGGTAAATTTTATTTATAGTTATTTTACTGAAGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTGTTTGAAGGTAAATTTTATTTATAGTTATTTTACTGAAGACT  399

seq1  GTTGATCCATGTTCAGTGGAAGAGACACTTTTCATTTATTAATATCTACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCCATGTTCAGTGGAAGAGACACTTTTCATTTATTAATATCTACC  449

seq1  TCATATCTCTAGATATATTTGTTCTCTTGGCAAATCCTGGATATAAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTCTAGATATATTTGTTCTCTTGGCAAATCCTGGATATAAATAA  499

seq1  ATTATATAATATACATAGCAATAAAACCTAAGAGACTGAGTAGGTTGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAATATACATAGCAATAAAACCTAAGAGACTGAGTAGGTTGTAT  549

seq1  CTATATATTTAAGAATATGTTATATATATATATATATATATATATATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATTTAAGAATATGTTATATATATATATATATATATATATATATA  599

seq1  TATATATATGTGTGTGTGTGTGATGAAATAAGATATTTTAAGGATTTGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGTGTGTGTGTGTGATGAAATAAGATATTTTAAGGATTTGGG  649

seq1  TTACATAGTTGTAGTTTAGGCTATTCTACATTCATCATCTGGATGTTGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGTTGTAGTTTAGGCTATTCTACATTCATCATCTGGATGTTGTA  699

seq1  AAATTTTATGAACAACTGATATATTAATTGATTTCAATATCCCTAAGTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATGAACAACTGATATATTAATTGATTTCAATATCCCTAAGTGC  749

seq1  CTGAAATTTTGTTTTCATTAATTCAATTAGGATTAAATATTAATACACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTTTGTTTTCATTAATTCAATTAGGATTAAATATTAATACACCT  799

seq1  AAAAACAATTCATTCTACTTGAGCCCTCGATGAAATATCACAAGGATGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATTCATTCTACTTGAGCCCTCGATGAAATATCACAAGGATGCT  849

seq1  AATGTGCATTTGTGATAGTTACCATGTAGTAAAGCTGAAAAGTGAATTC  898
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCATTTGTGATAGTTACCATGTAGTAAAGCTGAAAAGTGAATTC  898