BAC Information

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BAC

Clone NameB6Ng01-113H10
Chromosome5 (Build37)
Map Location 51,609,881 - 51,610,426
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113H10.bB6Ng01-113H10.g
ACCDH919252DH919253
length1,1651,005
definitionDH919252|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H10, 5' end.DH919253|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagt
agatgcttgcaagtatgtggagaaagaggaacactcctccatttttggtg
ggattgcaagcttgtacagccactctggaaatcagtctggcagttcctca
gaaaattggacatagtcctactggaggatcctgcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgttccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcctctcaacagaggaatggatacaaaaaatgttgtacatatacacaatg
gagtactattctgctattaaaaagaatgaatttataaaattcctaagcaa
atgaatggacctgcacggcatcatcctgagtgagataacaaaaatcacaa
aagaactcaaatgatatgtactcactgataagtggatattagcccagaaa
cttagaatacccaagataaaagatacaatttatgaaacacatgaaactca
agaagaacgaagagcaaatggtggacactttgcccctttttacaattggg
aacaaaacacccatggatcgagttacagagacaaagtttggagctgagac
aaaaggatggaccatctagagactgccatgtccagggatccatcccaaaa
tcagcctccaaatgttgacaccattgaatacactagcaagatttgctgat
taggaccctgatatagctgtctcttgtgagactatgccagggcctagcaa
acacagaagtgatgctcacagtcagctattagattgattacagggctccc
atggaggagctagagaagtacccaggagctaatgatctgcaaccctatag
gtggaacacatatgactaatcagtacccggagcttcttgtctctagctgc
atattattcaaagatggcctattgcgatcagtgaagaaaggccattgcat
acaacttttatatgctcagtacaggtacgccagggctaatgtggaaatgg
ctgggggaggcttgg
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagggaagttggtctgaagttctctatctttgttggac
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatttcgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgacagaactctgcacgaaacctgtctt
gtcctgggcttttttttggctgggagactattaataactgcttctatttc
tttaggggatatgggactgtttagatggtcaacttgatcctgattcaact
ttggtacctggtatcagtctagaaatttgtccatttcgtccaggttttcc
agttttgttgagtatagccttttgtagaaggatttgatggtgttttggat
ttcttcaggatctgttgttatgtcttccttttcatttctgatttttgtta
attaggattttgtccctgtgccctctagtgagtctagctaagggttatct
atcttgttgatttctcaaagaaccaactcctcgtttggtaattctttgaa
tagtcttcttgtttccactaggttgatttcacccctgaggtttgattatt
tcctgccatctactcctcctgggtgaatttgcttcctttttttctagagc
tttagatgtgtgtcaagctgcagtatggtgctcttctctcattctcttgg
agcactcagaactatgagtttcctcttagaaatgcttccatggggtccat
aggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51609881_51610426
seq2: B6Ng01-113H10.g_535_1072 (reverse)

seq1  AACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCT  50
      ||||||| |||| | ||| |||||||||||||| |||||||||||| |||
seq2  AACCTAT-GGACCCCATGGAAGCATTTCTAAGA-GGAAACTCATAGTTCT  48

seq1  GAGTGCCTCCAAGAAGAAACCGGAGAGAACA----CATACTAGCAGCTTG  96
      ||||| ||||||| ||||    ||||||| |    |||||| ||||||||
seq2  GAGTG-CTCCAAG-AGAA---TGAGAGAAGAGCACCATACT-GCAGCTTG  92

seq1  ACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAG  146
      || |||||||| |||||||||||||||||||||||||||||||||| |||
seq2  AC-ACACATCT-AAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAGGAG  140

seq1  GAGTAGACGGCAGGAAATAATCAAA-CTCAGGGGTGAAATCAACCAAGTG  195
      ||||||| ||||||||||||||||| ||||||||||||||||||| ||||
seq2  GAGTAGATGGCAGGAAATAATCAAACCTCAGGGGTGAAATCAACCTAGTG  190

seq1  GAAACAAGAAGAACTATTCAAAGAATTAACCAAATGAGGAGTTGGTTCTT  245
      ||||||||||| ||||||||||||||| |||||| |||||||||||||||
seq2  GAAACAAGAAG-ACTATTCAAAGAATT-ACCAAACGAGGAGTTGGTTCTT  238

seq1  TGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGC  295
      |||| ||||||||||||||||| ||||||||||||||||||||| |||||
seq2  TGAG-AAATCAACAAGATAGAT-AACCCTTAGCTAGACTCACTAGAGGGC  286

seq1  ACAGGGACAAAATCCTAATTAAC-AAAATCAGAAATGAAAAGGGAGACAT  344
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  ACAGGGACAAAATCCTAATTAACAAAAATCAGAAATGAAAAGGAAGACAT  336

seq1  AACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAA  394
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACAACAGATCCTGAAGAAATCCAAAACACCATCAAATCCTTCTACAAAA  386

seq1  GGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTA  436

seq1  GACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAA  494
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAA  486

seq1  CAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAG  544
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAG  536

seq1  CC  546
      ||
seq2  CC  538