BAC Information

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BAC

Clone NameB6Ng01-113J22
Chromosome5 (Build37)
Map Location 113,342,863 - 113,434,104
singlet/doubletdoublet
Overlap geneAdrbk2
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b
Downstream geneCrybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113J22.bB6Ng01-113J22.g
ACCDH919368DH919369
length1,0891,089
definitionDH919368|Mus musculus domesticus DNA, BAC clone: B6Ng01-113J22, 5' end.DH919369|Mus musculus domesticus DNA, BAC clone: B6Ng01-113J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,342,863 - 113,343,953)(113,433,028 - 113,434,104)
sequence
gaattctgctgtcaggttatgtgctcgggacttcatctagagacccagta
acactaccatactgcccccgcccccaaggcctcaggaattggacaagtcc
accgagaccttgcaggacttctcattgtgtgacatggggccaggcagcag
cagagaaacccacttttaaggggaagggggctgggcaaactgctgccccc
atcagaataactcagcgcacagtgcattagtgacagagggtatggggcat
gccagggcgcataggggaccgaccgctggacactgtcacccaccagtgtg
agatcattataagctatactgaaagacaaggcagcaactcttgtctatct
tgggcacatcctcagatgctccccaggtcaaactgggggatcaggaggac
tctgtcatacctaaccattgatggtgactccaagtttatgcacgccatgc
attgggggcactgtctggtgggttacctaggtcctgcttgaagtctgtgc
ccaccagaaatggctgtgatggatgccgcgaagtttcctcgaggggcatc
cctggaaagaagtcatcagaggaaggaagtgcacacgatactcagggtta
cctcatcgcctcagggacagcaaggagtcagccctgacctacagagaccc
tcctccagtgtctggagcctcaacccctacacctcaggcaggcactcgga
cacagcaatgcctagaacaggccaccatagtcccagagaccgtgcttcca
ccccagatatgctccctgccagacataaaagcttgagaagtaaggaccat
tttacgttctgggtccctggataccaaagtgagagagttgcacagcagaa
tgcctctgcttcttcagtaatttcgagtgtggataggacagccccgagga
tgtcccagctcccagaaggccgccctggtgtcctgagcctcctcggcttg
gagcagccccgtcagtgctcagaaacactgtgtcttagccccacacggtt
cccgtggcttcgttccactcctgggctgagagctgggcccctccttcagg
ccccgctgctctgtggtcagaggccggctgtctatttct
gaattcttgtggtgatggcgaggtacgaaggtgttggctgtactcttgca
gagtggagggcctcagttgtcacacgtatgttaactatggcagtgtcaca
tggatgaacagtggtctgtaatttcctggggcaaagaacttcactgagcc
tcttctagaggatatagagtcagagcactgaagataaaacccagtgggga
gggtggaagaggctggctagttcagatgagctgccctccaaccacactcc
cacccacacagcttcttaataagatgctcgaaacaactttctatttaaaa
atttctcgagggagagtctgcgaactggctcagcgggtgcttgtggctaa
gcctggcaagttgagtttgatccccaggacccacatggtggaaggagaga
accagcttccataagttgtcctctgacctccacgcgcgctccgtgacatg
cgtacaaccctcctcggcccctaacatttcacagtgatgtatccattttc
aaatagaccagtacgaggagaagcaaaatttcattagagaatctgggtga
gcgagagctgctgaggttctagagaaggtgcggcactgtgcagatatcag
cctaacctccagatcgcgtgtgcattccagaaaacacgggggctgggacc
tcatcggtggcagagagcatctacccacagggaacacagttgtgagtttt
gtccccaccactgaacaaagtcagtgaagactgcagagcagtggttctca
ccctaccaagtcctgcaaccctttaacacagcttcctcacaaaattatct
tcttttgctagttcataaactataacttttgcttctgttataaagtgtaa
tgttatttaacatctgatatataggatatcccgtatgtgggcccccgtga
aagggtcttttgacagttgagaacccactggcctaaaggcacttttgtaa
gtggatactttgccttacccagaagagagagaggcaaataacaaatagga
ttactgaaaaatcataaggcctgtggcggaattcatgttcccaatctgca
gatctggatttatcctgagctgtgaagggactggactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_113342863_113343953
seq2: B6Ng01-113J22.b_49_1137

seq1  GAATTCTGCTGTCAGGTTATGTGCTCGGGACTTCATCTAGAGACCCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGTCAGGTTATGTGCTCGGGACTTCATCTAGAGACCCAGTA  50

seq1  ACACTACCATACTGCCCCCGCCCCCAAGGCCTCAGGAATTGGACAAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACCATACTGCCCCCGCCCCCAAGGCCTCAGGAATTGGACAAGTCC  100

seq1  ACCGAGACCTTGCAGGACTTCTCATTGTGTGACATGGGGCCAGGCAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGACCTTGCAGGACTTCTCATTGTGTGACATGGGGCCAGGCAGCAG  150

seq1  CAGAGAAACCCACTTTTAAGGGGAAGGGGGCTGGGCAAACTGCTGCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCACTTTTAAGGGGAAGGGGGCTGGGCAAACTGCTGCCCCC  200

seq1  ATCAGAATAACTCAGCGCACAGTGCATTAGTGACAGAGGGTATGGGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATAACTCAGCGCACAGTGCATTAGTGACAGAGGGTATGGGGCAT  250

seq1  GCCAGGGCGCATAGGGGACCGACCGCTGGACACTGTCACCCACCAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCGCATAGGGGACCGACCGCTGGACACTGTCACCCACCAGTGTG  300

seq1  AGATCATTATAAGCTATACTGAAAGACAAGGCAGCAACTCTTGTCTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTATAAGCTATACTGAAAGACAAGGCAGCAACTCTTGTCTATCT  350

seq1  TGGGCACATCCTCAGATGCTCCCCAGGTCAAACTGGGGGATCAGGAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACATCCTCAGATGCTCCCCAGGTCAAACTGGGGGATCAGGAGGAC  400

seq1  TCTGTCATACCTAACCATTGATGGTGACTCCAAGTTTATGCACGCCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATACCTAACCATTGATGGTGACTCCAAGTTTATGCACGCCATGC  450

seq1  ATTGGGGGCACTGTCTGGTGGGTTACCTAGGTCCTGCTTGAAGTCTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGCACTGTCTGGTGGGTTACCTAGGTCCTGCTTGAAGTCTGTGC  500

seq1  CCACCAGAAATGGCTGTGATGGATGCCGCGAAGTTTCCTCGAGGGGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAAATGGCTGTGATGGATGCCGCGAAGTTTCCTCGAGGGGCATC  550

seq1  CCTGGAAAGAAGTCATCAGAGGAAGGAAGTGCACACGATACTCAGGGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAGAAGTCATCAGAGGAAGGAAGTGCACACGATACTCAGGGTTA  600

seq1  CCTCATCGCCTCAGGGACAGCAAGGAGTCAGCCCTGACCTACAGAGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCGCCTCAGGGACAGCAAGGAGTCAGCCCTGACCTACAGAGACCC  650

seq1  TCCTCCAGTGTCTGGAGCCTCAACCCCTACACCTCAGGCAGGCACTCGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGTGTCTGGAGCCTCAACCCCTACACCTCAGGCAGGCACTCGGA  700

seq1  CACAGCAATGCCTAGAACAGGCCACCATAGTCCCAGAGACCGTGCTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAATGCCTAGAACAGGCCACCATAGTCCCAGAGACCGTGCTTCCA  750

seq1  CCCCAGATATGCTCCCTGCCAGACATAAAAGCTTGAGAAGTAAGGACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATATGCTCCCTGCCAGACATAAAAGCTTGAGAAGTAAGGACCAT  800

seq1  TTTACGTTCTGGGTCCCTGGATACCAAAGTGAGAGAGTTGCACAGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGTTCTGGGTCCCTGGATACCAAAGTGAGAGAGTTGCACAGCAGAA  850

seq1  TGCCTCTGCTTCTTCAGTAATTTCGAGTGTGGATAGGACAGCCCCGAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCTTCTTCAGTAATTTCGAGTGTGGATAGGACAGCCCCGAGGA  900

seq1  TGTCCCAGCTCCCAGAAGGCCGCCCTGGTGTCCTGAGCCTCCTCGGCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGCTCCCAGAAGGCCGCCCTGGTGTCCTGAGCCTCCTCGGCTTG  950

seq1  GAGCAGCCCCGTCAGTGCTCAGAAACACTGTGTCTTAGCCCCACACGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCCCGTCAGTGCTCAGAAACACTGTGTCTTAGCCCCACACGGTT  1000

seq1  CCCCGTGGCTTCGTTCCACTCCTGGGCTGAAGAGCTGGGGCCCCTCCTTC  1050
       |||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  -CCCGTGGCTTCGTTCCACTCCTGGGCTG-AGAGCT-GGGCCCCTCCTTC  1047

seq1  AGGCCCCGCTGCTCTGTGGTTCAGAGGCC-GCTG-CTATTTCT  1091
      ||||||||||||||||||| ||||||||| |||| ||||||||
seq2  AGGCCCCGCTGCTCTGTGG-TCAGAGGCCGGCTGTCTATTTCT  1089

seq1: chr5_113433028_113434104
seq2: B6Ng01-113J22.g_70_1158 (reverse)

seq1  CCAGT-CAGTCCC-TCACAGCTCAGAACTAAAT-CAGATCTGCAGATTGG  47
      ||||| ||||||| ||||||||||| | ||||| ||||||||||||||||
seq2  CCAGTCCAGTCCCTTCACAGCTCAGGA-TAAATCCAGATCTGCAGATTGG  49

seq1  GGACATG-ACTCCGCCACAGGCCTTATGATTTTTCAGT-ATCCTATTTGT  95
      | ||||| | |||||||||||||||||||||||||||| |||||||||||
seq2  GAACATGAATTCCGCCACAGGCCTTATGATTTTTCAGTAATCCTATTTGT  99

seq1  TATTTGCCTCTTCTCTCTTCTGGGT-AGGC-AAGTATCCACTTAC-AAAG  142
      |||||||||| |||||||||||||| |||| |||||||||||||| ||||
seq2  TATTTGCCTC-TCTCTCTTCTGGGTAAGGCAAAGTATCCACTTACAAAAG  148

seq1  TGCCTTTAGGCCAGT-GGTTCTCAACTTGTCAAAAGACCCTTTCACGGGG  191
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  TGCCTTTAGGCCAGTGGGTTCTCAAC-TGTCAAAAGACCCTTTCACGGGG  197

seq1  G-CCACATACGGGATATCCTATATATCAGATGTT-AATAACATTACACTT  239
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCCACATACGGGATATCCTATATATCAGATGTTAAATAACATTACACTT  247

seq1  TATAACAGAAGC-AAAGTTATAG-TTATGAACTAGC-AAAGAAGATAATT  286
      |||||||||||| |||||||||| |||||||||||| |||||||||||||
seq2  TATAACAGAAGCAAAAGTTATAGTTTATGAACTAGCAAAAGAAGATAATT  297

seq1  TTGTGAGG-AGCTGTGTTAAAGGGTTGCAGGACTTGGTAGGGTGAGAACC  335
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGAAGCTGTGTTAAAGGGTTGCAGGACTTGGTAGGGTGAGAACC  347

seq1  ACTGCTCTGCAGTCTTCACTGACTTTGTTCAGTGGTGGGGACAAAACTCA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTGCAGTCTTCACTGACTTTGTTCAGTGGTGGGGACAAAACTCA  397

seq1  CAACTGTGTTCCCTGTGGGTAGATGCTCTCTGCCACCGATGAGGTCCCAG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGTTCCCTGTGGGTAGATGCTCTCTGCCACCGATGAGGTCCCAG  447

seq1  CCCCCGTGTTTTCTGGAATGCACACGCGATCTGGAGGTTAGGCTGATATC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGTGTTTTCTGGAATGCACACGCGATCTGGAGGTTAGGCTGATATC  497

seq1  TGCACAGTGCCGCACCTTCTCTAGAACCTCAGCAGCTCTCGCTCACCCAG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTGCCGCACCTTCTCTAGAACCTCAGCAGCTCTCGCTCACCCAG  547

seq1  ATTCTCTAATGAAATTTTGCTTCTCCTCGTACTGGTCTATTTGAAAATGG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAATGAAATTTTGCTTCTCCTCGTACTGGTCTATTTGAAAATGG  597

seq1  ATACATCACTGTGAAATGTTAGGGGCCGAGGAGGGTTGTACGCATGTCAC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCACTGTGAAATGTTAGGGGCCGAGGAGGGTTGTACGCATGTCAC  647

seq1  GGAGCGCGCGTGGAGGTCAGAGGACAACTTATGGAAGCTGGTTCTCTCCT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGCGCGTGGAGGTCAGAGGACAACTTATGGAAGCTGGTTCTCTCCT  697

seq1  TCCACCATGTGGGTCCTGGGGATCAAACTCAACTTGCCAGGCTTAGCCAC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCATGTGGGTCCTGGGGATCAAACTCAACTTGCCAGGCTTAGCCAC  747

seq1  AAGCACCCGCTGAGCCAGTTCGCAGACTCTCCCTCGAGAAATTTTTAAAT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCGCTGAGCCAGTTCGCAGACTCTCCCTCGAGAAATTTTTAAAT  797

seq1  AGAAAGTTGTTTCGAGCATCTTATTAAGAAGCTGTGTGGGTGGGAGTGTG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTGTTTCGAGCATCTTATTAAGAAGCTGTGTGGGTGGGAGTGTG  847

seq1  GTTGGAGGGCAGCTCATCTGAACTAGCCAGCCTCTTCCACCCTCCCCACT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGGCAGCTCATCTGAACTAGCCAGCCTCTTCCACCCTCCCCACT  897

seq1  GGGTTTTATCTTCAGTGCTCTGACTCTATATCCTCTAGAAGAGGCTCAGT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTATCTTCAGTGCTCTGACTCTATATCCTCTAGAAGAGGCTCAGT  947

seq1  GAAGTTCTTTGCCCCAGGAAATTACAGACCACTGTTCATCCATGTGACAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTTTGCCCCAGGAAATTACAGACCACTGTTCATCCATGTGACAC  997

seq1  TGCCATAGTTAACATACGTGTGACAACTGAGGCCCTCCACTCTGCAAGAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGTTAACATACGTGTGACAACTGAGGCCCTCCACTCTGCAAGAG  1047

seq1  TACAGCCAACACCTTCGTACCTCGCCATCACCACAAGAATTC  1077
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAACACCTTCGTACCTCGCCATCACCACAAGAATTC  1089