BAC Information

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BAC

Clone NameB6Ng01-113M23
Chromosome5 (Build37)
Map Location 59,049,338 - 59,050,258
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113M23.bB6Ng01-113M23.g
ACCDH919506DH919507
length1,084938
definitionDH919506|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M23, 5' end.DH919507|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacacccctctagccagtgccttcttccaggacagatcaccaga
ttgtctactatgaatatactacagactgaaggcacccaaggagttctgct
gcacacagggcaactgcataattgacaccacagtctgaagacctttcaca
ggatctgctgcatgcaaggcaactgactcaacagtctgacactctccctg
tagatctgctgcacacagggcaacagaactcacagtccaaagcactcccc
cccacccccaggagaagagctacacacaggaaaacagtttgactgctcct
ctgaagatctaagagtttgaaggcctccaaagagatctgctgcagccaag
acaacagatcagcagcttctctaacccgcataagatcccaaagtctgaag
acctcctagaggcctcccagaagagccactctgaccaggacaacaggtca
ccagtgtgtacactgctctgaagacatcacaatctgaaggctccatggga
ggactgatacatccaggaccacaggcctaccagaagatccgaaacaaacc
aggcacaaaagaagaagtctctagacagtcatccagaccagtcaacatca
gagattaccagatggctagaggcaagcacaagaccataagcaacagaagc
cagtatatatgtgcatcatcaaaacccaggtctcccaccacagcaagccc
tgggtacaccaacacaccagaaaatcaggaagctgacataaaatactacc
tcatgaagataataaagaaggtaactacaccaaagaaaagacaagatatt
aatcatttcacaacaaagccaaaaggagaggatcacaggcacataatgcc
acttacaacaaacaaacaggaacaacagtcatctatcttctatatctctc
atattaatgtactcattcacctataaaagacataaactaacagactggat
atgcagagagatccagcattttgctgcatacaagaaacatgcctcaatta
caaatacaaacactaggtcattgtcttccaaggtaaatggcaccaagaaa
taagctggaagttgtccattcttaataattcgat
gaattcaaacattgacaaaacaaatgaaatatccatcaaaaatgtctgtt
tttattacactgatattccattctatctagctttagagggaaataaggtt
gggtttttggataacatgacaacaaaatagtatgaaagtaaaccatatat
aaatgtaagaaaaataccttataaaataggtatctggattattccttaaa
tcaatgttttatgggacaagtatttttcagatttccttctacctattatt
tttatgactgaggatatttatcataatgataaaacattatcagccactga
ccattctatgtagagattcaactttgatgctcagttaaaaaaatactgac
tagaactcaataaaaaacatggaagtatcctacaggcataaaatttaatg
aaagagtaaaatgcagttgtttctgggtaattatttataattagacagac
ataaattgtgatatatgtactggatttctctgtctttcttactatgaggt
gtacttttcatttaaaattggattttattctagtttgagactggggtctc
cttttacctctgtcttcagttaatgagaatgaatagtgagagaaagatat
caaaatttctttcattattcaagtatatattttgaagttccccaaagaca
gatttttttttttaacttcttgcaaaaatgaaaagaagacctaaattaaa
gaccctaaactaaaaagaatcggaggcttgaatccttctctgaatgctct
tatccaacacatgacaaaccatgtgaacacctccagtgaaagaaagttca
tttcttcctggagaaaccttattttctgctttggattgttcagatcattc
agccagaaagaatagaatatcttttgttactatagtccacctgccccaac
agcctggctttaccaacgggtcttcattggcagtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59049338_59050258
seq2: B6Ng01-113M23.g_67_1004

seq1  GAATTCAAACATTGACAAAACAAATGAAATATCCATCAAAAATGTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACATTGACAAAACAAATGAAATATCCATCAAAAATGTCTGTT  50

seq1  TTTATTACACTGATATTCCATTCTATCTAGCTTTAGAGGGAAATAAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACACTGATATTCCATTCTATCTAGCTTTAGAGGGAAATAAGGTT  100

seq1  GGGTTTTTGGATAACATGACAACAAAATAGTATGAAAGTAAACCATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTGGATAACATGACAACAAAATAGTATGAAAGTAAACCATATAT  150

seq1  AAATGTAAGAAAAATACCTTATAAAATAGGTATCTGGATTATTCCTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAGAAAAATACCTTATAAAATAGGTATCTGGATTATTCCTTAAA  200

seq1  TCAATGTTTTATGGGACAAGTATTTTTCAGATTTCCTTCTACCTATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTTTATGGGACAAGTATTTTTCAGATTTCCTTCTACCTATTATT  250

seq1  TTTATGACTGAGGATATTTATCATAATGATAAAACATTATCAGCCACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACTGAGGATATTTATCATAATGATAAAACATTATCAGCCACTGA  300

seq1  CCATTCTATGTAGAGATTCAACTTTGATGCTCAGTTAAAAAAATACTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTATGTAGAGATTCAACTTTGATGCTCAGTTAAAAAAATACTGAC  350

seq1  TAGAACTCAATAAAAAACATGGAAGTATCCTACAGGCATAAAATTTAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCAATAAAAAACATGGAAGTATCCTACAGGCATAAAATTTAATG  400

seq1  AAAGAGTAAAATGCAGTTGTTTCTGGGTAATTATTTATAATTAGACAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAAAATGCAGTTGTTTCTGGGTAATTATTTATAATTAGACAGAC  450

seq1  ATAAATTGTGATATATGTACTGGATTTCTCTGTCTTTCTTACTATGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGTGATATATGTACTGGATTTCTCTGTCTTTCTTACTATGAGGT  500

seq1  GTACTTTTCATTTAAAATTGGATTTTATTCTAGTTTGAGACTGGGGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTCATTTAAAATTGGATTTTATTCTAGTTTGAGACTGGGGTCTC  550

seq1  CTTTTACCTCTGTCTTCAGTTAATGAGAATGAATAGTGAGAGAAAGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCTCTGTCTTCAGTTAATGAGAATGAATAGTGAGAGAAAGATAT  600

seq1  CAAAATTTCTTTCATTATTCAAGTATATA-TTTGAAGTTCCCCAAAGACA  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAAATTTCTTTCATTATTCAAGTATATATTTTGAAGTTCCCCAAAGACA  650

seq1  GA--TTTTTTTTTAAC-TCTTGCAAAAATGAAAAGAAGACCTAAATTAAA  696
      ||  |||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTTTAACTTCTTGCAAAAATGAAAAGAAGACCTAAATTAAA  700

seq1  GACC--TAACTAAAAAGAATCGGAGGCTTGAATCCTTCTCTGAATGCTCT  744
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAAACTAAAAAGAATCGGAGGCTTGAATCCTTCTCTGAATGCTCT  750

seq1  TATCCAACACATGACAAACCATGTGAACACCTCCAGTGAAAGAAAGTTCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAACACATGACAAACCATGTGAACACCTCCAGTGAAAGAAAGTTCA  800

seq1  TTTCTTCCT-GAGAAACCTTA-TTTCTGC-TTGGATTGTTCAGATCA-TC  840
      ||||||||| ||||||||||| ||||||| ||||||||||||||||| ||
seq2  TTTCTTCCTGGAGAAACCTTATTTTCTGCTTTGGATTGTTCAGATCATTC  850

seq1  AGCCAGAA--GATAGAATATC-TTTGTTACTATAGT-CAACTG-CCCAAC  885
      ||||||||   |||||||||| |||||||||||||| || ||| ||||||
seq2  AGCCAGAAAGAATAGAATATCTTTTGTTACTATAGTCCACCTGCCCCAAC  900

seq1  AGCCTGGCTTTACCAAC-GGTCTCCATT-GCAGTGGTG  921
      ||||||||||||||||| ||||| |||| |||||||||
seq2  AGCCTGGCTTTACCAACGGGTCTTCATTGGCAGTGGTG  938