BAC Information

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BAC

Clone NameB6Ng01-113N15
Chromosome5 (Build37)
Map Location 108,044,233 - 108,112,902
singlet/doubletdoublet
Overlap geneAW060207
Upstream geneZfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn
Downstream geneGfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113N15.bB6Ng01-113N15.g
ACCDH919536DH919537
length1,061927
definitionDH919536|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N15, 5' end.DH919537|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,111,842 - 108,112,902)(108,044,233 - 108,045,160)
sequence
gaattctctttgtatctttgtagaccaggatagccttgaattcacagagg
ttctcctgcctctgcttccccaatgctgggattaaaggtgtgcacccatg
tccagctctaaaataaatcataaaagaaaaaaaaataagtctggtgcagt
ggtacagatagtgaacaggtccccttcctgctgtctcacagttacagctt
acaggttctagcctttgtctcttggttttgtaagatgttcataggtatgt
tcatatgttcatattttcccctgaccctttggacagatttgtttccattt
tttttttttaatactgggaaccttggcggcatgtctatggacctaaaggt
ccagtagcagtgattacaggctcagagctatagggtaagtgtctcgctct
gacacttctggacctgtgagcggaaagcaaacctttcccctttataagcc
tttgtcacaggcgtttgttacagtgacagctgaccacacggagaaccaat
aagacattgtgaatagtgactaaaagctaggaatgcatcagctggctaca
aggatcccacagatctctggggtcagatttgttagaagcctgggaaacac
atgtgctaagtcggctgtcctgtgtgccagcctatggatgggccctgctg
gtcagaggctatactaggaatttccagagaagtacctgggaaacagggtg
taggctgtaataaaaaaattctcatttttgtacaccacaagccttcattg
ccttcctcctaaaagcgccccaaaactctggcccctaaacaaccaacact
cactgtccactgctggagatagctttagttacactacacagcactggcga
gaatcctgctcttctaacatccattttgatttaaaatctttcgtgtttga
gatggacttttctctgttgacaatgggctgggttttgcctgctcattagg
tgtggtgctccgggtttgtggtaattcctgattggagtacagtattaaac
catttcctggggatgtataaatgtatatagatgttgggttttcttcctcc
ctgccactagc
aacgtgagtcgagcaggggccctacagggtgctacttactggctcgatgc
tcatggcttgctagcctgttcttagaacccaggatcaccaactcaaggat
ggtcctacccacaatggcctgggcctctcctatcaaccactaattaagaa
aacatacaggcttgttttcagccttatcttatggagacagtttctcaatt
gagactccctcctttcagaagactctaggttgtgccaggttgacataaaa
ctagccaggatctgtgggatgaataaaggtatagatcagaagagtaaaaa
gtatggaaagtgtctacactgtaagtgtttcaagtaaccagtagaatggt
ggtggttatttgccatccaaggagcaccacttacagtcttgaacatcatc
aaactaaagtgaggactctggattgatctcagtgaacagaggcagcaggg
gaaccaggacagctgagaagatggggaaggcctgtttctgtgggccaagg
gaaaatggggaaatcgcctttagagctgcagagatggctggaacagcggt
cacggcttcattccttgtgctttgtgatggtaagaacttgtgaaggatgt
agtaggaaagactgcctaagtcagccgtaattcccatcttcaaggacagg
agggctgagagccatccctgcagtgcctcctgtgtctgcactaaaccaag
tacaggcgttcctgggagttagctagtcagtgccgtgatcacagtagagg
gagacacttgggcctgacgttttaaatttggcagtcttgaaacatcaaaa
ttcaagtaagtctagtttcatctgtacattagcttcactttaatttaaaa
agtttgggggttttgttcttggccttaaattgttttgcagtttaaaaccc
cctaagtacacccttggttgggtcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108111842_108112902
seq2: B6Ng01-113N15.b_48_1108 (reverse)

seq1  GCTAGTGGCAGGGAGG-AGAAAAACCAACATCTATATACATTTATACATT  49
      |||||||||||||||| |||||| |||||||||||||||||||||||| |
seq2  GCTAGTGGCAGGGAGGAAGAAAACCCAACATCTATATACATTTATACA-T  49

seq1  CACCAGGAAATGGGTTTATACTGTACTCCAATCAGGATTTACCACAAACC  99
      | ||||||||||| || |||||||||||||||||||| ||||||||||||
seq2  CCCCAGGAAATGGTTTAATACTGTACTCCAATCAGGAATTACCACAAACC  99

seq1  CGGAGCACCACACCTAATGAGCAGGCAAAACCCAGCCCATTGTCAACAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCACCACACCTAATGAGCAGGCAAAACCCAGCCCATTGTCAACAGA  149

seq1  GAAAAGTCCATCTCAAACACGAAAGATTTTAAATCAAAATGGATGTTAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCCATCTCAAACACGAAAGATTTTAAATCAAAATGGATGTTAGA  199

seq1  AGAGCAGGATTCTCGCCAGTGCTGTGTAGTGTAACTAAAGCTATCTCCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGATTCTCGCCAGTGCTGTGTAGTGTAACTAAAGCTATCTCCAG  249

seq1  CAGTGGACAGTGAGTGTTGGTTGTTTAGGGGCCAGAGTTTTGGGGCGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGACAGTGAGTGTTGGTTGTTTAGGGGCCAGAGTTTTGGGGCGCTT  299

seq1  TTAGGAGGAAGGCAATGAAGGCTTGTGGTGTACAAAAATGAGAATTTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGAAGGCAATGAAGGCTTGTGGTGTACAAAAATGAGAATTTTTT  349

seq1  TATTACAGCCTACACCCTGTTTCCCAGGTACTTCTCTGGAAATTCCTAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGCCTACACCCTGTTTCCCAGGTACTTCTCTGGAAATTCCTAGT  399

seq1  ATAGCCTCTGACCAGCAGGGCCCATCCATAGGCTGGCACACAGGACAGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCTGACCAGCAGGGCCCATCCATAGGCTGGCACACAGGACAGCC  449

seq1  GACTTAGCACATGTGTTTCCCAGGCTTCTAACAAATCTGACCCCAGAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGCACATGTGTTTCCCAGGCTTCTAACAAATCTGACCCCAGAGAT  499

seq1  CTGTGGGATCCTTGTAGCCAGCTGATGCATTCCTAGCTTTTAGTCACTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGATCCTTGTAGCCAGCTGATGCATTCCTAGCTTTTAGTCACTAT  549

seq1  TCACAATGTCTTATTGGTTCTCCGTGTGGTCAGCTGTCACTGTAACAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGTCTTATTGGTTCTCCGTGTGGTCAGCTGTCACTGTAACAAAC  599

seq1  GCCTGTGACAAAGGCTTATAAAGGGGAAAGGTTTGCTTTCCGCTCACAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGACAAAGGCTTATAAAGGGGAAAGGTTTGCTTTCCGCTCACAGG  649

seq1  TCCAGAAGTGTCAGAGCGAGACACTTACCCTATAGCTCTGAGCCTGTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGTGTCAGAGCGAGACACTTACCCTATAGCTCTGAGCCTGTAAT  699

seq1  CACTGCTACTGGACCTTTAGGTCCATAGACATGCCGCCAAGGTTCCCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTACTGGACCTTTAGGTCCATAGACATGCCGCCAAGGTTCCCAGT  749

seq1  ATTAAAAAAAAAAAATGGAAACAAATCTGTCCAAAGGGTCAGGGGAAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAAAAAATGGAAACAAATCTGTCCAAAGGGTCAGGGGAAAAT  799

seq1  ATGAACATATGAACATACCTATGAACATCTTACAAAACCAAGAGACAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATATGAACATACCTATGAACATCTTACAAAACCAAGAGACAAAG  849

seq1  GCTAGAACCTGTAAGCTGTAACTGTGAGACAGCAGGAAGGGGACCTGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACCTGTAAGCTGTAACTGTGAGACAGCAGGAAGGGGACCTGTTC  899

seq1  ACTATCTGTACCACTGCACCAGACTTATTTTTTTTTCTTTTATGATTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGTACCACTGCACCAGACTTATTTTTTTTTCTTTTATGATTTAT  949

seq1  TTTAGAGCTGGACATGGGTGCACACCTTTAATCCCAGCATTGGGGAAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCTGGACATGGGTGCACACCTTTAATCCCAGCATTGGGGAAGCA  999

seq1  GAGGCAGGAGAACCTCTGTGAATTCAAGGCTATCCTGGTCTACAAAGATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGAGAACCTCTGTGAATTCAAGGCTATCCTGGTCTACAAAGATA  1049

seq1  CAAAGAGAATTC  1061
      ||||||||||||
seq2  CAAAGAGAATTC  1061

seq1: chr5_108044233_108045160
seq2: B6Ng01-113N15.g_151_1077

seq1  AACGTGAGTCGAGCAGGGGCCCTACAGGGTGCTACTTACTGGCTCGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAGTCGAGCAGGGGCCCTACAGGGTGCTACTTACTGGCTCGATGC  50

seq1  TCATGGCTTGCTAGCCTGTTCTTAGAACCCAGGATCACCAACTCAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTTGCTAGCCTGTTCTTAGAACCCAGGATCACCAACTCAAGGAT  100

seq1  GGTCCTACCCACAATGGCCTGGGCCTCTCCTATCAACCACTAATTAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTACCCACAATGGCCTGGGCCTCTCCTATCAACCACTAATTAAGAA  150

seq1  AACATACAGGCTTGTTTTCAGCCTTATCTTATGGAGACAGTTTCTCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACAGGCTTGTTTTCAGCCTTATCTTATGGAGACAGTTTCTCAATT  200

seq1  GAGACTCCCTCCTTTCAGAAGACTCTAGGTTGTGCCAGGTTGACATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCCCTCCTTTCAGAAGACTCTAGGTTGTGCCAGGTTGACATAAAA  250

seq1  CTAGCCAGGATCTGTGGGATGAATAAAGGTATAGATCAGAAGAGTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGGATCTGTGGGATGAATAAAGGTATAGATCAGAAGAGTAAAAA  300

seq1  GTATGGAAAGTGTCTACACTGTAAGTGTTTCAAGTAACCAGTAGAATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAAAGTGTCTACACTGTAAGTGTTTCAAGTAACCAGTAGAATGGT  350

seq1  GGTGGTTATTTGCCATCCAAGGAGCACCACTTACAGTCTTGAACATCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTATTTGCCATCCAAGGAGCACCACTTACAGTCTTGAACATCATC  400

seq1  AAACTAAAGTGAGGACTCTGGATTGATCTCAGTGAACAGAGGCAGCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAGTGAGGACTCTGGATTGATCTCAGTGAACAGAGGCAGCAGGG  450

seq1  GAACCAGGACAGCTGAGAAGATGGGGAAGGCCTGTTTCTGTGGGCCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGACAGCTGAGAAGATGGGGAAGGCCTGTTTCTGTGGGCCAAGG  500

seq1  GAAAATGGGGAAATCGCCTTTAGAGCTGCAGAGATGGCTGGAACAGCGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGGGAAATCGCCTTTAGAGCTGCAGAGATGGCTGGAACAGCGGT  550

seq1  CACGGCTTCATTCCTTGTGCTTTGTGATGGTAAGAACTTGTGAAGGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTTCATTCCTTGTGCTTTGTGATGGTAAGAACTTGTGAAGGATGT  600

seq1  AGTAGGAAAGACTGCCTAAGTCAGCCGTAATTCCCATCTTCAAGGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAAAGACTGCCTAAGTCAGCCGTAATTCCCATCTTCAAGGACAGG  650

seq1  AGGGCTGAGAGCCATCCCTGCAGTGCCTCCTGTGTCTGCACTAAACCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGAGAGCCATCCCTGCAGTGCCTCCTGTGTCTGCACTAAACCAAG  700

seq1  TACAGGCGTTCCTGGGAGTTAGCTAGTCAGTGCCGTGATCACAGTAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCGTTCCTGGGAGTTAGCTAGTCAGTGCCGTGATCACAGTAGAGG  750

seq1  GAGACACTTGGGCCTGACGTTTTAAA-TTGGCAGTCTTGAAACATCAAAA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGACACTTGGGCCTGACGTTTTAAATTTGGCAGTCTTGAAACATCAAAA  800

seq1  TTCAAGTAAGTTCTAGTTTCATCTGTACATTAGCTTCACTTTAATTTAAA  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTAAG-TCTAGTTTCATCTGTACATTAGCTTCACTTTAATTTAAA  849

seq1  AAGTTTGGGGGTTTTGTTCTTGGCCTTAAAATTGTTTTGCAGTTTTAAAA  899
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  AAGTTTGGGGGTTTTGTTCTTGGCCTT-AAATTGTTTTGCAG-TTTAAAA  897

seq1  CCCCCT-AGTACACCCTTGTTTGGGTCATT  928
      |||||| |||||||||||| |||||||| |
seq2  CCCCCTAAGTACACCCTTGGTTGGGTCAAT  927