BAC Information

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BAC

Clone NameB6Ng01-114B08
Chromosome5 (Build37)
Map Location 138,043,381 - 138,221,786
singlet/doubletdoublet
Overlap geneEG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik
Upstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3
Downstream geneBcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114B08.bB6Ng01-114B08.g
ACCDH919700DH919701
length1,059696
definitionDH919700|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B08, 5' end.DH919701|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,220,714 - 138,221,786)(138,043,381 - 138,044,074)
sequence
gaattcctgattctgtctctacctcaagtgttcatcacacccagccaaag
tggaatttaaaacactttgactactgtttgactacacacttgcacactca
actctggggattgaacctagggctttgtacatgctttccccaggtactac
cactcatctgaacctaccctgcctgaaaccgtatcaaaataatttgtgta
actcagactgtccttggacatagaatccttctgcctcagcctcccaagtg
ctgggacattcttggagcctcggtgtcaggctaaggctcaagttctaata
actaaagctggggatttaaatggagaggaaggtctgaccccacacttggg
acagtgctttccacttgccatgggggtcggggcaggaaaagggtagaaga
ccctgaagcagtttaatcctatctaaactcccaagaacagttcggtaatt
tagggggggaaacattttattctattataaaaaaaaaaaaaactaacaaa
attacagactagcattccagagttatgagggctacgcttcccagcgcctc
agcatccgatgcatgagaaaggtatcttctgaagggcggggccgggcttg
aagccttagtgggggcagcccatccactgtcaagtgcggagattcggacc
acagagaatctgggttgcacagcatggtcatgtctgggcccggcccgagc
acctcctatgggaaggtgaagcaggttacactcgaggtggaggaagagag
cccaggggggtagagggatgtccaggtccctgcatcccttccttcacctt
caggggcgggcctcggggctgcggtggcagcatcgccagcttctcctcag
cgccgcgttcagtacttgctcctccgggcacttgcagacttcacaggtct
cggtagagtcgttagagcgcggtacgttaaccctgcgagcgcagggaagc
gggactgaggatcgccttcaccaagactaccgcgcccgtcagtccgcctg
ccccctctactccgcaggtctctcaggacagtggtccgaacgactttctc
actgctcct
gaattcccagagtttcagttgtaaagaaaatgactgaataaagtgtcatt
catagttaaaaaacaaacaaacaaacaaaaaaccaggagaaccatttgga
aaggggaaggtgataggggacaagagatacagtgggggtgattgtgatca
aaatacatttatacacgttttatatacaaattgatcaatttatttctgta
aaactcatctgtaattaatatgattagaaaaaagacagaaaaacaaaaag
gaaaagaaaactaccaaaagtaatcaggcacagtcctgtagtttcagtag
ggacaggtgggattgccacaagtttgaaactcacctggtctgttacacaa
agggagttctaggccagccatggccacatagtgaagtcttgtctcaaaac
ccacaaacattggaggtggggagagatatggtagcacacacctcaaatcc
aagcactctggaagcaaaggcaggtggatctctctgagtttgaggccagc
cagggggtatagtgagaccctatctcaaaacaaaataaaatcaaaagcaa
caacattggaccagcaagatggtttcacgtggtaaaggtgttcgtgtgga
gcctaaaagacctgagttgcatctttcagggctcacttggtgggagggaa
gaaccaacctccatgtgagcagagctgtgtgtatatatgcacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138220714_138221786
seq2: B6Ng01-114B08.b_45_1103 (reverse)

seq1  AGGAGCAGCTGAGAAAGTCGTTCCGGACCCGCTGTGCCCTGGAGGAGACC  50
      |||||||| ||||||||||||| |||| || ||||  ||||   ||||||
seq2  AGGAGCAG-TGAGAAAGTCGTT-CGGA-CCACTGT--CCTG--AGAGACC  43

seq1  GTGGCGGAGGGTGAGGGGGGCAGGCGGCCGGCCGGGCGCGGTGGTCTGGG  100
         |||||  ||   |||||||||||| | | |||||||||| |||| ||
seq2  --TGCGGA--GTAGAGGGGGCAGGCGGACTGACGGGCGCGGTAGTCTTGG  89

seq1  TGAAGGGCGATCCTCAGTCCCGCCTTCCCTGCGCTCGCAGGGTTGAACGT  150
      |||| ||||||||||||||||| ||||||||||||||||||||| |||||
seq2  TGAA-GGCGATCCTCAGTCCCG-CTTCCCTGCGCTCGCAGGGTT-AACGT  136

seq1  GCCGCGCTCTAAGCGACTCTACCGAGACCTGGTGAGTCTGCAGGTGCCC-  199
       ||||||||||| ||||||||||||||||||   |||||||| |||||| 
seq2  ACCGCGCTCTAA-CGACTCTACCGAGACCTGTGAAGTCTGCAAGTGCCCG  185

seq1  GAGGAGCAGGTACTGAACGCGGCGCTGAGGGAGAAGCTGGCGATGCTGCC  249
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  GAGGAGCAAGTACTGAACGCGGCGCTGA-GGAGAAGCTGGCGATGCTGCC  234

seq1  ACCGCAGCCCCGAGCCCCGCCCCTGAAGGTGAAGGAAGGGATGCAGGGAC  299
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACCGCAGCCCCGAGGCCCGCCCCTGAAGGTGAAGGAAGGGATGCAGGGAC  284

seq1  CTGGACATCCCTCTA-CCCCCTGGGCTCTCTTCCTCCACCTCGAGTGTAA  348
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGGACATCCCTCTACCCCCCTGGGCTCTCTTCCTCCACCTCGAGTGTAA  334

seq1  CCTGCTTCACCTTCCCATAGGAGGTGCTCGGGCCGGGCCCAGACATGACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCACCTTCCCATAGGAGGTGCTCGGGCCGGGCCCAGACATGACC  384

seq1  ATGCTGTGCAACCCAGATTCTCTGTGGTCCGAATCTCCGCACTTGACAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGCAACCCAGATTCTCTGTGGTCCGAATCTCCGCACTTGACAGT  434

seq1  GGATGGGCTGCCCCCACTAAGGCTTCAAGCCCGGCCCCGCCCTTCAGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGCTGCCCCCACTAAGGCTTCAAGCCCGGCCCCGCCCTTCAGAAG  484

seq1  ATACCTTTCTCATGCATCGGATGCTGAGGCGCTGGGAAGCGTAGCCCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTCTCATGCATCGGATGCTGAGGCGCTGGGAAGCGTAGCCCTCA  534

seq1  TAACTCTGGAATGCTAGTCTGTAATTTTGTTAGTTTTTTTTTTTTTTATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGGAATGCTAGTCTGTAATTTTGTTAGTTTTTTTTTTTTTTATA  584

seq1  ATAGAATAAAATGTTTCCCCCCCTAAATTACCGAACTGTTCTTGGGAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAAAATGTTTCCCCCCCTAAATTACCGAACTGTTCTTGGGAGTT  634

seq1  TAGATAGGATTAAACTGCTTCAGGGTCTTCTACCCTTTTCCTGCCCCGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGGATTAAACTGCTTCAGGGTCTTCTACCCTTTTCCTGCCCCGAC  684

seq1  CCCCATGGCAAGTGGAAAGCACTGTCCCAAGTGTGGGGTCAGACCTTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGGCAAGTGGAAAGCACTGTCCCAAGTGTGGGGTCAGACCTTCCT  734

seq1  CTCCATTTAAATCCCCAGCTTTAGTTATTAGAACTTGAGCCTTAGCCTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTAAATCCCCAGCTTTAGTTATTAGAACTTGAGCCTTAGCCTGA  784

seq1  CACCGAGGCTCCAAGAATGTCCCAGCACTTGGGAGGCTGAGGCAGAAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAGGCTCCAAGAATGTCCCAGCACTTGGGAGGCTGAGGCAGAAGGA  834

seq1  TTCTATGTCCAAGGACAGTCTGAGTTACACAAATTATTTTGATACGGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTCCAAGGACAGTCTGAGTTACACAAATTATTTTGATACGGTTT  884

seq1  CAGGCAGGGTAGGTTCAGATGAGTGGTAGTACCTGGGGAAAGCATGTACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGGTAGGTTCAGATGAGTGGTAGTACCTGGGGAAAGCATGTACA  934

seq1  AAGCCCTAGGTTCAATCCCCAGAGTTGAGTGTGCAAGTGTGTAGTCAAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTAGGTTCAATCCCCAGAGTTGAGTGTGCAAGTGTGTAGTCAAAC  984

seq1  AGTAGTCAAAGTGTTTTAAATTCCACTTTGGCTGGGTGTGATGAACACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCAAAGTGTTTTAAATTCCACTTTGGCTGGGTGTGATGAACACTT  1034

seq1  GAGGTAGAGACAGAATCAGGAATTC  1073
      |||||||||||||||||||||||||
seq2  GAGGTAGAGACAGAATCAGGAATTC  1059

seq1: chr5_138043381_138044074
seq2: B6Ng01-114B08.g_70_765

seq1  GAATTCCCAGAGTTTCAGTTGTAAAGAAAATGACTGAATAAAGTGTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGAGTTTCAGTTGTAAAGAAAATGACTGAATAAAGTGTCATT  50

seq1  CATAGTTAAAAAACAAACAAACAAACAAAAAACCAGGAGAACCATTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTAAAAAACAAACAAACAAACAAAAAACCAGGAGAACCATTTGGA  100

seq1  AAGGGGAAGGTGATAGGGGACAAGAGATACAGTGGGGGTGATTGTGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAGGTGATAGGGGACAAGAGATACAGTGGGGGTGATTGTGATCA  150

seq1  AAATACATTTATACACGTTTTATATACAAATTGATCAATTTATTTCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTTATACACGTTTTATATACAAATTGATCAATTTATTTCTGTA  200

seq1  AAACTCATCTGTAATTAATATGATTAGAAAAAAGACAGAAAAACAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATCTGTAATTAATATGATTAGAAAAAAGACAGAAAAACAAAAAG  250

seq1  GAAAAGAAAACTACCAAAAGTAATCAGGCACAGTCCTGTAGTTTCAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAACTACCAAAAGTAATCAGGCACAGTCCTGTAGTTTCAGTAG  300

seq1  GGACAGGTGGGATTGCCACAAGTTTGAAACTCACCTGGTCTGTTACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTGGGATTGCCACAAGTTTGAAACTCACCTGGTCTGTTACACAA  350

seq1  AGGGAGTTCTAGGCCAGCCATGGCCACATAGTGAAGTCTTGTCTCAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTCTAGGCCAGCCATGGCCACATAGTGAAGTCTTGTCTCAAAAC  400

seq1  CCACAAACATTGGAGGTGGGGAGAGATATGGTAGCACACACCTCAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACATTGGAGGTGGGGAGAGATATGGTAGCACACACCTCAAATCC  450

seq1  AAGCACTCTGGAAGCAAAGGCAGGTGGATCTCTCTGAGTTTGAGGCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTGGAAGCAAAGGCAGGTGGATCTCTCTGAGTTTGAGGCCAGC  500

seq1  CAGGGGGTATAGTGAGACCCTATCTCAAAACAAAATAAAATCAAAAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGTATAGTGAGACCCTATCTCAAAACAAAATAAAATCAAAAGCAA  550

seq1  CAACATTGGACCAGCAAGATGGTTTCACGTGGTAAAGGTGTTCGTGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGGACCAGCAAGATGGTTTCACGTGGTAAAGGTGTTCGTGTGGA  600

seq1  GCCT-AAAGACCTGAGTTGCATC-TTCAGGGCTCACTTGGTGGGAGGGAA  648
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCCTAAAAGACCTGAGTTGCATCTTTCAGGGCTCACTTGGTGGGAGGGAA  650

seq1  GAACCAACCTCCATGTGAGCAGAGCTGTGTGTATATATGCACATAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAACCTCCATGTGAGCAGAGCTGTGTGTATATATGCACATAC  696