BAC Information

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BAC

Clone NameB6Ng01-114B16
Chromosome5 (Build37)
Map Location 90,597,972 - 90,730,269
singlet/doubletdoublet
Overlap geneCox18, Ankrd17
Upstream geneSlc4a4, Gc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733
Downstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114B16.bB6Ng01-114B16.g
ACCDH919713DH919714
length1,115517
definitionDH919713|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B16, 5' end.DH919714|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,729,152 - 90,730,269)(90,597,972 - 90,598,494)
sequence
gaattctttctactgtccatgagtttctgattggtttggactcactagga
taatctgtttgatatagtataacttcatgttgggagtaaactttattata
tgtgtagttttgggaggtagactgtagaaattgattcaatggtttgtagc
acttaatgttcttgaaaaggaccagggtttatttcccagcacttaagtgc
tggctcacaaccactgtaacaccatttccaggggagttgatcccatattg
tgacctttctcctcatcatgcatgcacacaatacatatacattgcataca
gtaaaacacttaaaaacatgtaaaaaataaataagcccaagggaaataaa
caaaagaatagtatataggatatgtgtaacagtgttagttggtagaacat
tttggttttcctagctgtgattacacacagaagcttttatttctttggga
tcactaatgtattagtatgtaagtcttccctctaagtctgttggactttt
ttttgagagacatgcttgcaagttttatagtctttgcataataagcttga
ctgccaacattgtggtcctgggagagtacaaaggaggctgagggcagagt
aggggtactcagaatgtcggcattcaccctctgtgctcctccttacccag
tcggggtcctttgtttatgatctccttatttctcttcactagctgtgtat
caacttaatctactctagttaccttcccggtagtaacttagatttaatga
tgtatctttagtttatcaagaatggaattccttttgcattctaaagtcta
tgaggaaagggagaaacaattattctctcttattcttaaatcaaacctag
atattgtgatatattctctgtgctaagttttgtactcctgagacagagtg
ccttaggtcatgcattcaagacatatggcatggataaaacctctaggttc
gaggagagttatttacctaaagattagagacagatatatccagtatagta
tatgaaggttacttgttaacatacaggttttagtacctaagttttgcttt
gtttctgttgggtacttccatatgctggtgaaatactgtaacaggaataa
ggcaagttattcgac
aactcaggtcttcggggttagcagcaagcacctttatctgttgagccatc
ttccaaggcctggcctggaactcttgatcctcctgtctcagtctgctcag
tgacagaatcagaggcagtgccacccaggcctggcaagaattgtcttcaa
tataagtatatacatcactctactgctacagtctctgcaactgctccctg
ggactcctgaggtgcaaactcttaccatggccttcaagatcttgcttctg
tggctctcgactaactcaatgaaagaaaggtgttagggtagggtcatgta
gagagatggaagtgccacaagtacaggggcttgtgaacaactggcggtct
tataggtgtgaaccaagggaacgtgggcatggggctcatggacaaagttt
tcaaaagaaaatttccccccagaaaatgaaagaaggtttccctctctcca
aaaaagaaaaactgaagcaactaaacaaactaggaggaagaaaaggacga
ggaggaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90729152_90730269
seq2: B6Ng01-114B16.b_47_1161 (reverse)

seq1  GTCG-ATAACTTGCC-TATTCCTGTTACAGTATTTTCACAGCAATATGGA  48
      |||| |||||||||| |||||||||||||||||||   |||| |||||||
seq2  GTCGAATAACTTGCCTTATTCCTGTTACAGTATTTCACCAGC-ATATGGA  49

seq1  AGTACCCAAACAGAAACAAAGCAAAACTTAGGTTACTAAAACCTGTATGT  98
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  AGTACCC-AACAGAAACAAAGCAAAACTTAGG-TACTAAAACCTGTATGT  97

seq1  TAACAAGTAACCTTCATATACTATACTGGATATATCTGTCTCTAATCTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTAACCTTCATATACTATACTGGATATATCTGTCTCTAATCTTT  147

seq1  AGGTAAATAACTCTCCTCGAACCTAGAGGTTTTATCCATGCCATATGTTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGTAAATAACTCTCCTCGAACCTAGAGGTTTTATCCATGCCATATG-TC  196

seq1  TTGGATGCATGACCTAAGGCACTCTGTCTCAGGAGTACAAAACTTAGCAC  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCATGACCTAAGGCACTCTGTCTCAGGAGTACAAAACTTAGCAC  246

seq1  AGAGAATATATCACAATATCTAGGTTTGATTTAAGAATAAGAGAGAATAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATATCACAATATCTAGGTTTGATTTAAGAATAAGAGAGAATAA  296

seq1  TTGTTTTCTCCCTTTCCTCATAGACTTTAGAATGCAAAAGGAATTCCATT  348
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-TTTCTCCCTTTCCTCATAGACTTTAGAATGCAAAAGGAATTCCATT  345

seq1  CTTGATAAAACTAAGATACATCATTAAATCTAAGTTACTACCGGGAAGGT  398
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAAACTAAAGATACATCATTAAATCTAAGTTACTACCGGGAAGGT  395

seq1  AACTAGAGTAGATTAAGTTGATACACAGCTAGTGAAGAGAAATAAGGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGTAGATTAAGTTGATACACAGCTAGTGAAGAGAAATAAGGAGA  445

seq1  TCATAAACAAAGGACCCCGACTGGGTAAGGAGGAGCACAGAGGGTGAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACAAAGGACCCCGACTGGGTAAGGAGGAGCACAGAGGGTGAATG  495

seq1  CCGACATTCTGAGTACCCCTACTCTGCCCTCAGCCTCCTTTGTACTCTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACATTCTGAGTACCCCTACTCTGCCCTCAGCCTCCTTTGTACTCTCC  545

seq1  CAGGACCACAATGTTGGCAGTCAAGCTTATTATGCAAAGACTATAAAACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCACAATGTTGGCAGTCAAGCTTATTATGCAAAGACTATAAAACT  595

seq1  TGCAAGCATGTCTCTCAAAAAAAAGTCCAACAGACTTAGAGGGAAGACTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCATGTCTCTCAAAAAAAAGTCCAACAGACTTAGAGGGAAGACTT  645

seq1  ACATACTAATACATTAGTGATCCCAAAGAAATAAAAGCTTCTGTGTGTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTAATACATTAGTGATCCCAAAGAAATAAAAGCTTCTGTGTGTAA  695

seq1  TCACAGCTAGGAAAACCAAAATGTTCTACCAACTAACACTGTTACACATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTAGGAAAACCAAAATGTTCTACCAACTAACACTGTTACACATA  745

seq1  TCCTATATACTATTCTTTTGTTTATTTCCCTTGGGCTTATTTATTTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATATACTATTCTTTTGTTTATTTCCCTTGGGCTTATTTATTTTTTA  795

seq1  CATGTTTTTAAGTGTTTTACTGTATGCAATGTATATGTATTGTGTGCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTAAGTGTTTTACTGTATGCAATGTATATGTATTGTGTGCATG  845

seq1  CATGATGAGGAGAAAGGTCACAATATGGGATCAACTCCCCTGGAAATGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGAGGAGAAAGGTCACAATATGGGATCAACTCCCCTGGAAATGGT  895

seq1  GTTACAGTGGTTGTGAGCCAGCACTTAAGTGCTGGGAAATAAACCCTGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTGGTTGTGAGCCAGCACTTAAGTGCTGGGAAATAAACCCTGGT  945

seq1  CCTTTTCAAGAACATTAAGTGCTACAAACCATTGAATCAATTTCTACAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCAAGAACATTAAGTGCTACAAACCATTGAATCAATTTCTACAGT  995

seq1  CTACCTCCCAAAACTACACATATAATAAAGTTTACTCCCAACATGAAGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCCAAAACTACACATATAATAAAGTTTACTCCCAACATGAAGTT  1045

seq1  ATACTATATCAAACAGATTATCCTAGTGAGTCCAAACCAATCAGAAACTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATATCAAACAGATTATCCTAGTGAGTCCAAACCAATCAGAAACTC  1095

seq1  ATGGACAGTAGAAAGAATTC  1118
      ||||||||||||||||||||
seq2  ATGGACAGTAGAAAGAATTC  1115

seq1: chr5_90597972_90598494
seq2: B6Ng01-114B16.g_66_588

seq1  GAATTCAACTCAGGTCTTCGGGGTTAGCAGCAAGCACCTTTATCTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCAGGTCTTCGGGGTTAGCAGCAAGCACCTTTATCTGTTGA  50

seq1  GCCATCTTCCAAGGCCTGGCCTGGAACTCTTGATCCTCCTGTCTCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTCCAAGGCCTGGCCTGGAACTCTTGATCCTCCTGTCTCAGTCT  100

seq1  GCTCAGTGACAGAATCAGAGGCAGTGCCACCCAGGCCTGGCAAGAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGACAGAATCAGAGGCAGTGCCACCCAGGCCTGGCAAGAATTGT  150

seq1  CTTCAATATAAGTATATACATCACTCTACTGCTACAGTCTCTGCAACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATATAAGTATATACATCACTCTACTGCTACAGTCTCTGCAACTGC  200

seq1  TCCCTGGGACTCCTGAGGTGCAAACTCTTACCATGGCCTTCAAGATCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGACTCCTGAGGTGCAAACTCTTACCATGGCCTTCAAGATCTTG  250

seq1  CTTCTGTGGCTCTCGACTAACTCAATGAAAGAAAGGTGTTAGGGTAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGGCTCTCGACTAACTCAATGAAAGAAAGGTGTTAGGGTAGGGT  300

seq1  CATGTAGAGAGATGGAAGTGCCACAAGTACAGGGGCTTGTGAACAACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGAGAGATGGAAGTGCCACAAGTACAGGGGCTTGTGAACAACTGG  350

seq1  CGGTCTTATAGGTGTGAACCAAGGGAACGTGGGCATGGGGCTCATGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTTATAGGTGTGAACCAAGGGAACGTGGGCATGGGGCTCATGGACA  400

seq1  AAGTTTTCAAAAGAAAATTTCCCCCCAGAAAATGAAAGAAGGTTTCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCAAAAGAAAATTTCCCCCCAGAAAATGAAAGAAGGTTTCCCTC  450

seq1  TCTCCAAAAAAGAAAAACTGAAGCAACTAAACAAACTAGGAGGAAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAAAAAGAAAAACTGAAGCAACTAAACAAACTAGGAGGAAGAAAA  500

seq1  GGACGAGGAGGAGGAGGAGGAGG  523
      |||||||||||||||||||||||
seq2  GGACGAGGAGGAGGAGGAGGAGG  523