BAC Information

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BAC

Clone NameB6Ng01-114E02
Chromosome5 (Build37)
Map Location 15,682,736 - 15,840,467
singlet/doubletdoublet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131, LOC626390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114E02.bB6Ng01-114E02.g
ACCDH919820DH919821
length1,2001,138
definitionDH919820|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E02, 5' end.DH919821|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,839,234 - 15,840,467)(15,682,736 - 15,683,899)
sequence
gaattcaaaatgagaatttccaagaagataatgaataacaagaagaaaca
ttttactattacaaatatgtgggattcaggatcaaagagtaagctggaaa
ctctgagaagatttagagcaatacaaaaaagtagctgggcatggtggaac
acatctttaatcccagcaggcagcaggcagaagcaagcagatctctgagt
tcaaggacagcttggtctactaagtgagttccaggtcaggcaagggatac
acagagaatccatatcataaaaaacaccaaagagagaggaagcatagaaa
gctactgagcttgaattaaggagtgaatcatctcacagattattgaatat
gggactgtctaggttgtaaaggtgagaaaaaggtgaatagaaagctattc
agcagcgctaacattttataaaacatactatgaagaacaaaagtgcacta
ttacttttaagctaagccacaacattaatgacaactattaagttaaattg
aaataaaagagcaagtcaatgaaagttatataaattattatagggattac
atcaacttttattactattatcattaagtaaacttatcatttctaaatat
tatactgctagctactttccaccttttgaattgtattgtaaaaaccagac
actgtaattcatttctctgttgcagggagtcatttttccattgaaaaatc
tactgaacatagcaaaattaagaattcatacttctctattgaaaactaac
taccaaatattagaaaaaagtgcactgaattgaataatcctttataaaag
tcattttcaaatatgggtaaatacctgtaatctgtgccattgacaggcgt
ccatgtgtatgttcgatttcctttgtcaatgtatctctagaaagttaaat
aaattgttattaccattttctatatgaatttatagaaaaagtaaacatac
attctgtgttactcacatctttttacaagttaaaaatatatccattatac
atttaaaatgttattcattctcatagtaaaagtttgaacagaactaagta
ctcaaatgaacagttacagattataggcaattatgatgaatagacttata
aaaatagaataaggttcaatatgacaagtaggcattcaggaatgtatgcc
gattgaggagaattgcttctcactctaaagtacaatcccactctcacaat

gaattcctaatgcttgtatgcattgaaaaaaatgcatatactttctccac
gttttttaaaactatcatgtaaacttccagggctgagaagtttggctaac
gctatacagaaagagtctagtacaaagcatgacagatgatatcctgcata
tatttttattaaaaaaataataacttgcactattggggtatctgttttta
cttgtaaactttactgtcaatattactgaagagattatgaaaaattgtgt
tgaactgtgcttttatatgctggaatatatttatttacccgcagctgtta
tgaagcactgggcttagagttatacaaatctacataaattttgcatctga
cactaacttgctctgcagttttggcaaaataatattctcttgaaatatct
atttctttatgatctcagctctgctgtgctcatcaatacaactgtgtcct
tgagccattcagtctttgtgcctctgctcctatgatctccatttgtctcc
catacaaatcatttcgagaaactccaagttcgtctgagatgatctcaagt
aggtcggcatagtcccttaaagggaattaactccctgttaagcacttgcc
agcttccactcctgccatggctacttgcctcattgaaatttctttaagct
ggaaatacagtgaacactatgtagagatggatagaatgacactattccaa
atcctaactagtgtcagtgaatatggattgcaagtcagcacttagtctgt
gccacaaaggacctgaaggaaatgactcattcatatttattggagccttc
tctctatgacagaagacatgttttgcaagtagcctttatctcccacttcc
tcctcatccttcctatgtcctttggcctcctggggatatccaccttcccc
tgatgagacaatcatgtgactttcagaagtgaatgcatctaaagaatttg
tcagttctagcctatatcgtcatatttagctatcattgagtctgctctgc
tctgtttatctgtagctcctaaaattgttataagtatttagctagtatgt
aaatgtgctagcacctaaacttgaagaatatgtaggagcatcttctcctt
catggcccggagagaggaacaccacaccatttactgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15839234_15840467
seq2: B6Ng01-114E02.b_43_1242 (reverse)

seq1  ATTGTGAGATGGTGATTGTACTTTTAGATGTAGAAAGGCTAATTTTCCTC  50
      |||||||||  | |||||||| ||||||   ||||  || ||||   |||
seq2  ATTGTGAGAGTGGGATTGTAC-TTTAGAGTGAGAA--GC-AATT---CTC  43

seq1  CTCATATCTGCCATCATTCTTAAACATGCTCTACTATGGTCAATATTTGA  100
      |||| ||| ||   ||||| | |  |||| ||||  | ||| ||| ||||
seq2  CTCA-ATCGGCATACATTCCTGA--ATGC-CTAC--TTGTC-ATA-TTGA  85

seq1  ACCTTATCTAATATTTTATAGTTCTATTTCATCATTAAATTTGCTTATAA  150
      |||||||   || |||||||  |||| ||||||||   | |||| ||| |
seq2  ACCTTATTCTAT-TTTTATAAGTCTA-TTCATCAT---AATTGCCTAT-A  129

seq1  ATCTGTAACCTGTATCATTTGAGTACTTAGTTCTGTTCCAAACTTTTACT  200
      |||||||| |||| ||||||||||||||||||||||| ||||||||||||
seq2  ATCTGTAA-CTGT-TCATTTGAGTACTTAGTTCTGTT-CAAACTTTTACT  176

seq1  TAATGAGAATGAATAACATTTTTTAAATGTATAATGGAATATATTTTTAA  250
        ||||||||||||||||  ||||||||||||||||| ||||||||||||
seq2  --ATGAGAATGAATAACA--TTTTAAATGTATAATGG-ATATATTTTTAA  221

seq1  CTTGTTAAAAAAGATGTTGAGTAACCACAGAATGTATGTTTACTTTTTCT  300
      |||||  ||||||||| ||||||| |||||||||||||||||||||||||
seq2  CTTGT--AAAAAGATG-TGAGTAA-CACAGAATGTATGTTTACTTTTTCT  267

seq1  ATAAATTCATATAGAAAATGGTAATAACAATTATATTTAACTTTCTAGAG  350
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATAAATTCATATAGAAAATGGTAATAACAATT-TATTTAACTTTCTAGAG  316

seq1  ATACATTGACAAAGGAAATCGAACATACACATGGACGCCTGTCAATGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGACAAAGGAAATCGAACATACACATGGACGCCTGTCAATGGCA  366

seq1  CAGATTACAGGTATTTACCCATATTTGAAAATGACTTTTATAAAGGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTACAGGTATTTACCCATATTTGAAAATGACTTTTATAAAGGATTA  416

seq1  TTCAATTCAGTGCACTTTTTTCTAATATTTGGTAGTTAGTTTTCAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCAGTGCACTTTTTTCTAATATTTGGTAGTTAGTTTTCAATAGA  466

seq1  GAAGTATGAATTCTTAATTTTGCTATGTTCAGTAGATTTTTCAATGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGAATTCTTAATTTTGCTATGTTCAGTAGATTTTTCAATGGAAA  516

seq1  AATGACTCCCTGCAACAGAGAAATGAATTACAGTGTCTGGTTTTTACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCCCTGCAACAGAGAAATGAATTACAGTGTCTGGTTTTTACAAT  566

seq1  ACAATTCAAAAGGTGGAAAGTAGCTAGCAGTATAATATTTAGAAATGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCAAAAGGTGGAAAGTAGCTAGCAGTATAATATTTAGAAATGATA  616

seq1  AGTTTACTTAATGATAATAGTAATAAAAGTTGATGTAATCCCTATAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTTAATGATAATAGTAATAAAAGTTGATGTAATCCCTATAATAA  666

seq1  TTTATATAACTTTCATTGACTTGCTCTTTTATTTCAATTTAACTTAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAACTTTCATTGACTTGCTCTTTTATTTCAATTTAACTTAATAG  716

seq1  TTGTCATTAATGTTGTGGCTTAGCTTAAAAGTAATAGTGCACTTTTGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTAATGTTGTGGCTTAGCTTAAAAGTAATAGTGCACTTTTGTTC  766

seq1  TTCATAGTATGTTTTATAAAATGTTAGCGCTGCTGAATAGCTTTCTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTATGTTTTATAAAATGTTAGCGCTGCTGAATAGCTTTCTATTC  816

seq1  ACCTTTTTCTCACCTTTACAACCTAGACAGTCCCATATTCAATAATCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTCTCACCTTTACAACCTAGACAGTCCCATATTCAATAATCTGT  866

seq1  GAGATGATTCACTCCTTAATTCAAGCTCAGTAGCTTTCTATGCTTCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATTCACTCCTTAATTCAAGCTCAGTAGCTTTCTATGCTTCCTCT  916

seq1  CTCTTTGGTGTTTTTTATGATATGGATTCTCTGTGTATCCCTTGCCTGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGTGTTTTTTATGATATGGATTCTCTGTGTATCCCTTGCCTGAC  966

seq1  CTGGAACTCACTTAGTAGACCAAGCTGTCCTTGAACTCAGAGATCTGCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTTAGTAGACCAAGCTGTCCTTGAACTCAGAGATCTGCTT  1016

seq1  GCTTCTGCCTGCTGCCTGCTGGGATTAAAGATGTGTTCCACCATGCCCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCCTGCTGCCTGCTGGGATTAAAGATGTGTTCCACCATGCCCAG  1066

seq1  CTACTTTTTTGTATTGCTCTAAATCTTCTCAGAGTTTCCAGCTTACTCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTTTGTATTGCTCTAAATCTTCTCAGAGTTTCCAGCTTACTCTT  1116

seq1  TGATCCTGAATCCCACATATTTGTAATAGTAAAATGTTTCTTCTTGTTAT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTGAATCCCACATATTTGTAATAGTAAAATGTTTCTTCTTGTTAT  1166

seq1  TCATTATCTTCTTGGAAATTCTCATTTTGAATTC  1234
      ||||||||||||||||||||||||||||||||||
seq2  TCATTATCTTCTTGGAAATTCTCATTTTGAATTC  1200

seq1: chr5_15682736_15683899
seq2: B6Ng01-114E02.g_68_1205

seq1  GAATTCCTAATGCTTGTATGCATTGAAAAAAATGCATATACTTTCTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATGCTTGTATGCATTGAAAAAAATGCATATACTTTCTCCAC  50

seq1  GTTTTTTAAAACTATCATGTAAACTTCCAGGGCTGAGAAGTTTGGCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAAAACTATCATGTAAACTTCCAGGGCTGAGAAGTTTGGCTAAC  100

seq1  GCTATACAGAAAGAGTCTAGTACAAAGCATGACAGATGATATCCTGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAGAAAGAGTCTAGTACAAAGCATGACAGATGATATCCTGCATA  150

seq1  TATTTTTATTAAAAAAATAATAACTTGCACTATTGGGGTATCTGTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATTAAAAAAATAATAACTTGCACTATTGGGGTATCTGTTTTTA  200

seq1  CTTGTAAACTTTACTGTCAATATTACTGAAGAGATTATGAAAAATTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAACTTTACTGTCAATATTACTGAAGAGATTATGAAAAATTGTGT  250

seq1  TGAACTGTGCTTTTATATGCTGGAATATATTTATTTACCCGCAGCTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTGCTTTTATATGCTGGAATATATTTATTTACCCGCAGCTGTTA  300

seq1  TGAAGCACTGGGCTTAGAGTTATACAAATCTACATAAATTTTGCATCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACTGGGCTTAGAGTTATACAAATCTACATAAATTTTGCATCTGA  350

seq1  CACTAACTTGCTCTGCAGTTTTGGCAAAATAATATTCTCTTGAAATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACTTGCTCTGCAGTTTTGGCAAAATAATATTCTCTTGAAATATCT  400

seq1  ATTTCTTTATGATCTCAGCTCTGCTGTGCTCATCAATACAACTGTGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTATGATCTCAGCTCTGCTGTGCTCATCAATACAACTGTGTCCT  450

seq1  TGAGCCATTCAGTCTTTGTGCCTCTGCTCCTATGATCTCCATTTGTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATTCAGTCTTTGTGCCTCTGCTCCTATGATCTCCATTTGTCTCC  500

seq1  CATACAAATCATTTCGAGAAACTCCAAGTTCGTCTGAGATGATCTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAATCATTTCGAGAAACTCCAAGTTCGTCTGAGATGATCTCAAGT  550

seq1  AGGTCGGCATAGTCCCTTAAAGGGAATTAACTCCCTGTTAAGCACTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGGCATAGTCCCTTAAAGGGAATTAACTCCCTGTTAAGCACTTGCC  600

seq1  AGCTTCCACTCCTGCCATGGCTACTTGCCTCATTGAAATTTCTTTAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCACTCCTGCCATGGCTACTTGCCTCATTGAAATTTCTTTAAGCT  650

seq1  GGAAATACAGTGAACACTATGTAGAGATGGATAGAATGACACTATTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACAGTGAACACTATGTAGAGATGGATAGAATGACACTATTCCAA  700

seq1  ATCCTAACTAGTGTCAGTGAATATGGATTGCAAGTCAGCACTTAGTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAACTAGTGTCAGTGAATATGGATTGCAAGTCAGCACTTAGTCTGT  750

seq1  GCCACAAAGGACCTGAAGGAAATGACTCATTCATATTTATTGGAGCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAAGGACCTGAAGGAAATGACTCATTCATATTTATTGGAGCCTTC  800

seq1  TCTCTATGACAGAAGACATGTTTTGCAAGTAGCCTTTATCTCCCACTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGACAGAAGACATGTTTTGCAAGTAGCCTTTATCTCCCACTTCC  850

seq1  TCCTCATCCTTCCTATGTCCTTTGGCCTCCTGGGGATATCCACCTTCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCCTTCCTATGTCCTTTGGCCTCCTGGGGATATCCACCTTCCCC  900

seq1  TGATGAGACAATCATGTGACTTTCAAGAAGTGAATGCATCTAAAGAAATT  950
      |||||||||||||||||||||||| ||||||||||||||||||||||  |
seq2  TGATGAGACAATCATGTGACTTTC-AGAAGTGAATGCATCTAAAGAA--T  947

seq1  TTGTCAGTTCTTAGCCTATATCGTCATATTTAGGCTATTCATTGAGTCTG  1000
      |||||||||| ||||||||||||||||||||| |||| ||||||||||||
seq2  TTGTCAGTTC-TAGCCTATATCGTCATATTTA-GCTA-TCATTGAGTCTG  994

seq1  CTCTTGCTCTGTTTATCTGTAGCTCCTAAAATTTGTTATAAGTTAATTTA  1050
      ||| ||||||||||||||||||||||||||| |||||||||||  |||||
seq2  CTC-TGCTCTGTTTATCTGTAGCTCCTAAAA-TTGTTATAAGT--ATTTA  1040

seq1  GGCTAGTTATGTAAATGTGCCTAGCACCTTAAAAACTTTGAAGGTATAAT  1100
       ||||| |||||||||||| |||||||||   |||| ||||||    |||
seq2  -GCTAG-TATGTAAATGTG-CTAGCACCT---AAAC-TTGAAG----AAT  1079

seq1  -TGTAAGGAGCATCTTCTCCTTCATGGCCCGGGAAGGAGGAGAACACACA  1149
       ||| |||||||||||||||||||||||||||    |||  |||||| ||
seq2  ATGT-AGGAGCATCTTCTCCTTCATGGCCCGG---AGAGAGGAACAC-CA  1124

seq1  CACACATTTACTGGA  1164
      ||| |||||||||||
seq2  CAC-CATTTACTGGA  1138