BAC Information

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BAC

Clone NameB6Ng01-114O07
Chromosome5 (Build37)
Map Location 136,374,530 - 136,581,811
singlet/doubletdoublet
Overlap geneYwhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4
Upstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1
Downstream genePolr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114O07.bB6Ng01-114O07.g
ACCDH920296DH920297
length1,189489
definitionDH920296|Mus musculus domesticus DNA, BAC clone: B6Ng01-114O07, 5' end.DH920297|Mus musculus domesticus DNA, BAC clone: B6Ng01-114O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,580,619 - 136,581,811)(136,374,530 - 136,375,024)
sequence
gaattcactcacatgcatcacacactttgcacggcatttaccaaaccaca
tggtcacagatctttctgtgccaggagtacctgcaggcctggttgtcctt
gggcagctttgccataaataagcatgtggcttttcaagctccgagaaccc
ctctcccagcctatgacctgcttgggaaggggacccaggccagcactccc
acctgtcttgtccttctggtgacagcagctccacttgtccccacggaaga
tgccaggatggtatgaccgtaggaggcccctgttgttggtgctcgctttg
cgcaatgcagacagccactggttcaactcgttcacacactgcagggacag
cggctcagaagtctgccccttcctccccagagccaggtactctcttctga
gccactctcccagcccctcacagactctccacttggtacaaagaagctag
agcaatctgggaatggggtgatcaaatgagcagctgtctccatcagatta
acctgtggggaagcctgtggggtatttttgattgatgactgatgtgggcc
taacccattgcatatggtgccaactgctagcagctggtcctaaagggcat
aagaaaccaggctgagtgaggcatggggagcaagcatacaacagcatttt
tctatgggctctgcttcagttccaacctttgggtttctgtcctgggatcc
tgcctggcttcatctgatgtttgactgcaacctgcaacctgcaatctgta
accctttcctcaccaagttgcttttggtcacaatctttatcacagcaata
gaaacattagacacccacttttagcctctcaattgaggattctagacaga
ggctctaccactgagccacgcccccagcccctcactggaggattctaggc
aagtgctctcttgctttgaatcatgccaaaagcacatcacttgaattttt
caatattcacttttgaaattaagcattgagtttcagctagccttgacctt
gtgagagtcttaaaaaaaaaaaaaaccagaccaaaaaaggaaaatccagg
cctggagtctcaagactagctgttctatttcatctagcctacacacaaac
ttacatatggaagcccgtggtaacattgtacatttctaagcatgagaccc
cagacggtatataaactcgcctgcatatcttatctagcc
cacccacttagttaactctaacccacactgtcatagctccggacatcaaa
atccctctttttgttgttgtattttgcttgtttattagacttttaaaaac
taatagacctgacttactggatagatagatagatagatagatagatagat
agatagatagatagatagatagatagatagatagatagatgaatgatagc
tagactttcacatagcccgggctggtctccaatttgttatatagcaggag
tatgaccttgaactactgaccctcctgcttccacctgctgagtttgggaa
ttacaaatttggtcatcgtccctgacttaaggacgatgtttaagttggaa
gctttgtatttgtgtatgttagaccctgtgtctgctcatctgaagggagt
acacattggtgccactgcacagcccaaccaactccatgtttgaagctctg
gaagttaaactccaatgccaggaggaaaaccacgaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_136580619_136581811
seq2: B6Ng01-114O07.b_49_1237 (reverse)

seq1  GGCTAGATTAGGTACTGCAGGCTGTGTGTATATACTGTCCTGGGGTCTCA  50
      |||||||| || || ||||||| | || ||||||| || |||||||||||
seq2  GGCTAGATAAGATA-TGCAGGC-GAGTTTATATACCGT-CTGGGGTCTCA  47

seq1  TGCCTAGAAAATGGTTCATGTTTGCCACTGGGCCTCCATATGTAGGTATG  100
      ||| ||||||   || ||   || |||| |||| |||||||||| || ||
seq2  TGCTTAGAAA--TGTACAATGTTACCAC-GGGCTTCCATATGTAAGTTTG  94

seq1  TGTGTA-GCTAGATG-AATAG-ACAGCTAGGTCCTTGTGACTCAGAGCTT  147
      |||||| |||||||| ||||| ||||||||   |||| |||||   || |
seq2  TGTGTAGGCTAGATGAAATAGAACAGCTAG--TCTTGAGACTCCAGGCCT  142

seq1  GGTTTTTCCTTTTCTGGTCT-GTTTTTTTTTTTTTTAAGACTCTCAC-AG  195
      || |||||||||| |||||| |||||||||||||||||||||||||| ||
seq2  GGATTTTCCTTTTTTGGTCTGGTTTTTTTTTTTTTTAAGACTCTCACAAG  192

seq1  GTC-AGGCTAGCCTGAAACTCAATGCCTTAATTTCCAAAAGTGAATATTG  244
      ||| ||||||| ||||||||||||| |||||||| |||||||||||||||
seq2  GTCAAGGCTAG-CTGAAACTCAATG-CTTAATTT-CAAAAGTGAATATTG  239

seq1  AAAAATTCAAGTGATGTGCTTTTGGCATGATTC-AAGCAAGAGAGCACTT  293
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAAATTCAAGTGATGTGCTTTTGGCATGATTCAAAGCAAGAGAGCACTT  289

seq1  GCCTAGAATCCTCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAATCCTCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCC  339

seq1  TCTGTCTAGAATCCTCAATTGAGAGGCTAAAAGTGGGTGTCTAATGTTTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTAGAATCCTCAATTGAGAGGCTAAAAGTGGGTGTCTAATGTTTC  389

seq1  TATTGCTGTGATAAAGATTGTGACCAAAAGCAACTTGGTGAGGAAAGGGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGTGATAAAGATTGTGACCAAAAGCAACTTGGTGAGGAAAGGGT  439

seq1  TACAGATTGCAGGTTGCAGGTTGCAGTCAAACATCAGATGAAGCCAGGCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATTGCAGGTTGCAGGTTGCAGTCAAACATCAGATGAAGCCAGGCA  489

seq1  GGATCCCAGGACAGAAACCCAAAGGTTGGAACTGAAGCAGAGCCCATAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCAGGACAGAAACCCAAAGGTTGGAACTGAAGCAGAGCCCATAGA  539

seq1  AAAATGCTGTTGTATGCTTGCTCCCCATGCCTCACTCAGCCTGGTTTCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTGTTGTATGCTTGCTCCCCATGCCTCACTCAGCCTGGTTTCTT  589

seq1  ATGCCCTTTAGGACCAGCTGCTAGCAGTTGGCACCATATGCAATGGGTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTTAGGACCAGCTGCTAGCAGTTGGCACCATATGCAATGGGTTA  639

seq1  GGCCCACATCAGTCATCAATCAAAAATACCCCACAGGCTTCCCCACAGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACATCAGTCATCAATCAAAAATACCCCACAGGCTTCCCCACAGGT  689

seq1  TAATCTGATGGAGACAGCTGCTCATTTGATCACCCCATTCCCAGATTGCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGATGGAGACAGCTGCTCATTTGATCACCCCATTCCCAGATTGCT  739

seq1  CTAGCTTCTTTGTACCAAGTGGAGAGTCTGTGAGGGGCTGGGAGAGTGGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCTTTGTACCAAGTGGAGAGTCTGTGAGGGGCTGGGAGAGTGGC  789

seq1  TCAGAAGAGAGTACCTGGCTCTGGGGAGGAAGGGGCAGACTTCTGAGCCG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGAGTACCTGGCTCTGGGGAGGAAGGGGCAGACTTCTGAGCCG  839

seq1  CTGTCCCTGCAGTGTGTGAACGAGTTGAACCAGTGGCTGTCTGCATTGCG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTGCAGTGTGTGAACGAGTTGAACCAGTGGCTGTCTGCATTGCG  889

seq1  CAAAGCGAGCACCAACAACAGGGGCCTCCTACGGTCATACCATCCTGGCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCGAGCACCAACAACAGGGGCCTCCTACGGTCATACCATCCTGGCA  939

seq1  TCTTCCGTGGGGACAAGTGGAGCTGCTGTCACCAGAAGGACAAGACAGGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCGTGGGGACAAGTGGAGCTGCTGTCACCAGAAGGACAAGACAGGT  989

seq1  GGGAGTGCTGGCCTGGGTCCCCTTCCCAAGCAGGTCATAGGCTGGGAGAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCTGGCCTGGGTCCCCTTCCCAAGCAGGTCATAGGCTGGGAGAG  1039

seq1  GGGTTCTCGGAGCTTGAAAAGCCACATGCTTATTTATGGCAAAGCTGCCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTCGGAGCTTGAAAAGCCACATGCTTATTTATGGCAAAGCTGCCC  1089

seq1  AAGGACAACCAGGCCTGCAGGTACTCCTGGCACAGAAAGATCTGTGACCA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAACCAGGCCTGCAGGTACTCCTGGCACAGAAAGATCTGTGACCA  1139

seq1  TGTGGTTTGGTAAATGCCGTGCAAAGTGTGTGATGCATGTGAGTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTGGTAAATGCCGTGCAAAGTGTGTGATGCATGTGAGTGAATTC  1189

seq1: chr5_136374530_136375024
seq2: B6Ng01-114O07.g_68_562

seq1  GAATTCCACCCACTTAGTTAACTCTAACCCACACTGTCATAGCTCCGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCACTTAGTTAACTCTAACCCACACTGTCATAGCTCCGGAC  50

seq1  ATCAAAATCCCTCTTTTTGTTGTTGTATTTTGCTTGTTTATTAGACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCCCTCTTTTTGTTGTTGTATTTTGCTTGTTTATTAGACTTTT  100

seq1  AAAAACTAATAGACCTGACTTACTGGATAGATAGATAGATAGATAGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAATAGACCTGACTTACTGGATAGATAGATAGATAGATAGATAG  150

seq1  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAAT  200

seq1  GATAGCTAGACTTTCACATAGCCCGGGCTGGTCTCCAATTTGTTATATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTAGACTTTCACATAGCCCGGGCTGGTCTCCAATTTGTTATATAG  250

seq1  CAGGAGTATGACCTTGAACTACTGACCCTCCTGCTTCCACCTGCTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTATGACCTTGAACTACTGACCCTCCTGCTTCCACCTGCTGAGTT  300

seq1  TGGGAATTACAAATTTGGTCATCGTCCCTGACTTAAGGACGATGTTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTACAAATTTGGTCATCGTCCCTGACTTAAGGACGATGTTTAAG  350

seq1  TTGGAAGCTTTGTATTTGTGTATGTTAGACCCTGTGTCTGCTCATCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCTTTGTATTTGTGTATGTTAGACCCTGTGTCTGCTCATCTGAA  400

seq1  GGGAGTACACATTGGTGCCACTGCACAGCCCAACCAACTCCATGTTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTACACATTGGTGCCACTGCACAGCCCAACCAACTCCATGTTTGAA  450

seq1  GCTCTGGAAGTTAAACTCCAATGCCAGGAGGAAAACCACGAAGTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGAAGTTAAACTCCAATGCCAGGAGGAAAACCACGAAGTC  495