BAC Information

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BAC

Clone NameB6Ng01-114O21
Chromosome5 (Build37)
Map Location 135,048,477 - 135,255,823
singlet/doubletdoublet
Overlap geneRfc2, Lat2, Eif4h, LOC638081, Limk1, Eln
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52
Downstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114O21.bB6Ng01-114O21.g
ACCDH920324DH920325
length9771,086
definitionDH920324|Mus musculus domesticus DNA, BAC clone: B6Ng01-114O21, 5' end.DH920325|Mus musculus domesticus DNA, BAC clone: B6Ng01-114O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,254,847 - 135,255,823)(135,048,477 - 135,049,558)
sequence
gaattctatgcagacactctactgctgagccacttctccagactctaaaa
ggtgtgtacacctctacacacacacatacatgcacacatatgttctaggt
aaaaagtctaccatcagtgaggcacacttccattggtttgtttgtttgct
tgtttttcactattaattttgagatggtccctcactaagttgcccaggct
tatgtcttaaactcactttatgtagctcaggctggccctaaacttgtaat
cctcctgcctcaatcatccaggtacctgagattacaggtttgcaccagca
gtcttggctggctctggcctgaggtttcactgtgcaggcaagagatccac
ggggtcacaccaggcagagcaaggatagggctgccattctaaaaaggatg
gagtgattggtgacagtagtgaggccgccagcagagagggctgggaatgt
ctgggcagatgctgtgaaggatcgctgtcacccttggctgagaggtgaca
gatggcccctagtcagatgttctctcccaggggctccgctggcggggctg
agacttctggatgcagccttgggagcgggcagggtggagggcagcctccc
cgactcctaggcctgggaatgtccggactggcagagagccctccagaggc
tggtgaaaggtccacttaccatgacggatgggggccccgccaggccccgc
caattaggcaagatggagtgccaggagcgagttataaatatctcagccca
tgactggcccaaggaggaaaatggtggtattgaacagacaggagaaagtt
gttcgtttgagatgggacaggctctgggggggttttgaaaacattgtttc
ttcctccatcaggacttttgagctgggcagcacatgttggtgcctgaggg
cttggctgcagttcaagttcggacaggggtggggtccagtctctggaagg
tcactgcattcaagcctagaaaaaaat
gaattcttgtgttccccatggcagctgcggaaattccagcacaaggtccc
caaggtctctccatgaacaggaagtgacacctaagggattgacagcccca
gaactctgtttgcagctagcttcactgggcttgcctctccgaggttaact
tgacccggctgggagcttcctgggggaaacactggtggcctgggaggtgg
aggaggatcgcctgcctcctgtaagacttcccctctgcaccatagctcct
gctgagacattcccctgaaactaccattaactaggtcacaaggtagcctt
gggctttctgtcccagcttccaaaaagtaactactcaacagggacatcat
cccagatgtcaatttgaaaaaaaactgtcgcgtgagcttcatgtgagaaa
agggaaatgagccaagaaggcaaggttcatggcctgagccttctcgggta
caggttcccatacaccactggtgggttctcatactccactagctggaggg
accaggaaggggagggtcacccgggctgcctgtagcccaggctgcacagg
aagctgaccgaccctattttcagacagagtctcctgtagtccaggctgta
ctcctgactccccataaacttagagtggcttagaactttctatccttcca
actctactcctgggtcctgagattaaacccagctccgaccgcacccagtt
tatacagtgctaaggatggaacccagggctttgtacatgctaggcaggca
ttctgccaaccgggctacagccctacctccagttgtattcactttaactc
cccataaccccccatgccttgggttttgttgttgtttgaggtcttacttc
gtggggatccttctgccttggacctctgtagtgttactgtcatacctgcc
ttgggacactctgtttggaaaaggatctattttagtttttgagtcatggt
ctcaggtaatctaagaatggcctgagatctctaggtagcttgaggattga
acttgggatcttatgtcttatatgtccgctaagaattggagaactcaggc
atgaatcacctgggtggtgttggatgcattgctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135254847_135255823
seq2: B6Ng01-114O21.b_47_1023 (reverse)

seq1  ATTTTTTTCTAGGCTTTGAATGCAGTGACCTTCCAGAGACTGGACCCCAC  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTAGGC-TTGAATGCAGTGACCTTCCAGAGACTGGACCCCAC  49

seq1  CCCTTGTCCGGACTTGAACTTGCAGCCAAGCCCTCAGGCACCAACATTGT  100
      ||| |||||| |||||||| |||||||||||||||||||||||||||   
seq2  CCC-TGTCCGAACTTGAAC-TGCAGCCAAGCCCTCAGGCACCAACAT--G  95

seq1  TGCTGCCCAGCTC-AAAGTCCTGATGGAGGAAGAAAC-ATGTTTTCAAAA  148
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TGCTGCCCAGCTCAAAAGTCCTGATGGAGGAAGAAACAATGTTTTCAAAA  145

seq1  -CCCCCCAGAGCCTGT-CCATCTCAAACGAAC-ACTTTCTCCTGTCTGTT  195
       ||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  CCCCCCCAGAGCCTGTCCCATCTCAAACGAACAACTTTCTCCTGTCTGTT  195

seq1  CAATACCACCATTTTCCTCCTTGGGCCAGTCATGGGCTGAGATATTTATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCACCATTTTCCTCCTTGGGCCAGTCATGGGCTGAGATATTTATA  245

seq1  ACTCGCTCCTGGCACTCCATCTTGCCTAATTGGCGGGGCCTGGCGGGGCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCTCCTGGCACTCCATCTTGCCTAATTGGCGGGGCCTGGCGGGGCC  295

seq1  CCCATCCGTCATGGTAAGTGGACCTTTCACCAGCCTCTGGAGGGCTCTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCGTCATGGTAAGTGGACCTTTCACCAGCCTCTGGAGGGCTCTCT  345

seq1  GCCAGTCCGGACATTCCCAGGCCTAGGAGTCGGGGAGGCTGCCCTCCACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCCGGACATTCCCAGGCCTAGGAGTCGGGGAGGCTGCCCTCCACC  395

seq1  CTGCCCGCTCCCAAGGCTGCATCCAGAAGTCTCAGCCCCGCCAGCGGAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCGCTCCCAAGGCTGCATCCAGAAGTCTCAGCCCCGCCAGCGGAGC  445

seq1  CCCTGGGAGAGAACATCTGACTAGGGGCCATCTGTCACCTCTCAGCCAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAGAGAACATCTGACTAGGGGCCATCTGTCACCTCTCAGCCAAG  495

seq1  GGTGACAGCGATCCTTCACAGCATCTGCCCAGACATTCCCAGCCCTCTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGCGATCCTTCACAGCATCTGCCCAGACATTCCCAGCCCTCTCT  545

seq1  GCTGGCGGCCTCACTACTGTCACCAATCACTCCATCCTTTTTAGAATGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCGGCCTCACTACTGTCACCAATCACTCCATCCTTTTTAGAATGGC  595

seq1  AGCCCTATCCTTGCTCTGCCTGGTGTGACCCCGTGGATCTCTTGCCTGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTATCCTTGCTCTGCCTGGTGTGACCCCGTGGATCTCTTGCCTGCA  645

seq1  CAGTGAAACCTCAGGCCAGAGCCAGCCAAGACTGCTGGTGCAAACCTGTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAACCTCAGGCCAGAGCCAGCCAAGACTGCTGGTGCAAACCTGTA  695

seq1  ATCTCAGGTACCTGGATGATTGAGGCAGGAGGATTACAAGTTTAGGGCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGTACCTGGATGATTGAGGCAGGAGGATTACAAGTTTAGGGCCA  745

seq1  GCCTGAGCTACATAAAGTGAGTTTAAGACATAAGCCTGGGCAACTTAGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGCTACATAAAGTGAGTTTAAGACATAAGCCTGGGCAACTTAGTG  795

seq1  AGGGACCATCTCAAAATTAATAGTGAAAAACAAGCAAACAAACAAACCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCATCTCAAAATTAATAGTGAAAAACAAGCAAACAAACAAACCAA  845

seq1  TGGAAGTGTGCCTCACTGATGGTAGACTTTTTACCTAGAACATATGTGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGTGCCTCACTGATGGTAGACTTTTTACCTAGAACATATGTGTG  895

seq1  CATGTATGTGTGTGTGTAGAGGTGTACACACCTTTTAGAGTCTGGAGAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTGTGTGTGTAGAGGTGTACACACCTTTTAGAGTCTGGAGAAG  945

seq1  TGGCTCAGCAGTAGAGTGTCTGCATAGAATTC  977
      ||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCAGTAGAGTGTCTGCATAGAATTC  977

seq1: chr5_135048477_135049558
seq2: B6Ng01-114O21.g_69_1154

seq1  GAATTCTTGTGTTCCCCATGGCAGCTGCGGAAATTCCAGCACAAGGTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGTTCCCCATGGCAGCTGCGGAAATTCCAGCACAAGGTCCC  50

seq1  CAAGGTCTCTCCATGAACAGGAAGTGACACCTAAGGGATTGACAGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCTCTCCATGAACAGGAAGTGACACCTAAGGGATTGACAGCCCCA  100

seq1  GAACTCTGTTTGCAGCTAGCTTCACTGGGCTTGCCTCTCCGAGGTTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGTTTGCAGCTAGCTTCACTGGGCTTGCCTCTCCGAGGTTAACT  150

seq1  TGACCCGGCTGGGAGCTTCCTGGGGGAAACACTGGTGGCCTGGGAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCGGCTGGGAGCTTCCTGGGGGAAACACTGGTGGCCTGGGAGGTGG  200

seq1  AGGAGGATCGCCTGCCTCCTGTAAGACTTCCCCTCTGCACCATAGCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATCGCCTGCCTCCTGTAAGACTTCCCCTCTGCACCATAGCTCCT  250

seq1  GCTGAGACATTCCCCTGAAACTACCATTAACTAGGTCACAAGGTAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACATTCCCCTGAAACTACCATTAACTAGGTCACAAGGTAGCCTT  300

seq1  GGGCTTTCTGTCCCAGCTTCCAAAAAGTAACTACTCAACAGGGACATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTCTGTCCCAGCTTCCAAAAAGTAACTACTCAACAGGGACATCAT  350

seq1  CCCAGATGTCAATTTGAAAAAAAACTGTCGCGTGAGCTTCATGTGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGTCAATTTGAAAAAAAACTGTCGCGTGAGCTTCATGTGAGAAA  400

seq1  AGGGAAATGAGCCAAGAAGGCAAGGTTCATGGCCTGAGCCTTCTCGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATGAGCCAAGAAGGCAAGGTTCATGGCCTGAGCCTTCTCGGGTA  450

seq1  CAGGTTCCCATACACCACTGGTGGGTTCTCATACTCCACTAGCTGGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCCATACACCACTGGTGGGTTCTCATACTCCACTAGCTGGAGGG  500

seq1  ACCAGGAAGGGGAGGGTCACCCGGGCTGCCTGTAGCCCAGGCTGCACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGGGGAGGGTCACCCGGGCTGCCTGTAGCCCAGGCTGCACAGG  550

seq1  AAGCTGACCGACCCTATTTTCAGACAGAGTCTCCTGTAGTCCAGGCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACCGACCCTATTTTCAGACAGAGTCTCCTGTAGTCCAGGCTGTA  600

seq1  CTCCTGACTCCCCATAAACTTAGAGTGGCTTAGAACTTTCTATCCTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTCCCCATAAACTTAGAGTGGCTTAGAACTTTCTATCCTTCCA  650

seq1  ACTCTACTCCTGGGTCCTGAGATTAAACCCAGCTCCGACCGCACCCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTCCTGGGTCCTGAGATTAAACCCAGCTCCGACCGCACCCAGTT  700

seq1  TATACAGTGCTAAGGATGGAACCCAGGGCTTTGTACATGCTAGGCAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTGCTAAGGATGGAACCCAGGGCTTTGTACATGCTAGGCAGGCA  750

seq1  TTCTGCCAACCGGGCTACAGCCCTACCTCCAGTTGTATTCACTTTAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAACCGGGCTACAGCCCTACCTCCAGTTGTATTCACTTTAACTC  800

seq1  CCCATAACCCCCCATGCCTTGGGTTTTGTTGTTGTTTTGAGGTCTTACTT  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCATAACCCCCCATGCCTTGGGTTTTGTTGTTG-TTTGAGGTCTTACTT  849

seq1  CGTGGGGATCCTTCTGCCTTGG-CCTCTGTAGTGTTACTGTCATACCTGC  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGTGGGGATCCTTCTGCCTTGGACCTCTGTAGTGTTACTGTCATACCTGC  899

seq1  CTTGGGACACCTCTGTTTTGAAGAAGGATCTAATTTTAGTTTTTGAGTCA  949
      ||||||||| |||||||| ||| |||||||| ||||||||||||||||||
seq2  CTTGGGACA-CTCTGTTTGGAA-AAGGATCT-ATTTTAGTTTTTGAGTCA  946

seq1  TGGTCTCAGGTAATCCTAG-ATGGCCTTGAGATCTCTAGGTAGC-TGAGG  997
      |||||||||||||||  || |||||| ||||||||||||||||| |||||
seq2  TGGTCTCAGGTAATCTAAGAATGGCC-TGAGATCTCTAGGTAGCTTGAGG  995

seq1  A-TGACCT--GAGTCTTATGTCCT-TATGTCCGCTAAGA--TTGAGACTC  1041
      | ||| ||  |  ||||||||| | ||||||||||||||  | ||||   
seq2  ATTGAACTTGGGATCTTATGTCTTATATGTCCGCTAAGAATTGGAGAACT  1045

seq1  CAGGCATGAATCACTCTGGGTGG-GTTTGATGCATTGCTGGG  1082
      |||||||||||||| |||||||| ||| ||||||||||||||
seq2  CAGGCATGAATCAC-CTGGGTGGTGTTGGATGCATTGCTGGG  1086