BAC Information

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BAC

Clone NameB6Ng01-114P09
Chromosome5 (Build37)
Map Location 104,029,752 - 104,150,466
singlet/doubletdoublet
Overlap geneSlc10a6, 1700016H13Rik
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13
Downstream geneAff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114P09.bB6Ng01-114P09.g
ACCDH920348DH920349
length2991,008
definitionDH920348|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P09, 5' end.DH920349|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,150,168 - 104,150,466)(104,029,752 - 104,030,486)
sequence
ttcacttgatcttagccaaaaggccgagaagcgatggtccctgaattctg
aaggaagctcccagccagtctcacagggtaagtggtatcacagctgagct
gttcggacagaaaggattctccctgcctcagcatccaacagactccaaac
acgagcagtgtgttcattcatatctaagccgaggggatggcccggacagt
gtgcacttcatggaaagcagggacaagattgtatcatcagctttcggttg
tcagcattcctacagctatgatggaaggctggtggggggagggggaagg
gaattccactcacaggtacaggtaatgtgttcattttaacagtgtggcat
tgtatacagtcacgagtgctgcagaatgagaaccaggcattgaggctcac
acctgtaatcccctcaccaagtcaggactgccatgggttcaaggccaacc
caggctacagagttccaaagcagcatagtgagagacctgcatctatcttt
ggtagatgtgcctggtagagatgcttataaatagttgccacagaccttct
gggtccctgtatctgcgtggaacggggtctctcgacgcgggtgggcaaag
cgtggatgaatgacagacagacgcacacaggagagtttgtgtggaatctg
agtgtaatttgtcaaatcgaacatcagactttttatgcagaagacaataa
ggaagttgggtgacatacccgcaaggtacaaatgaggtaaccggatgctt
aatgactcttacacagaacagaggaatgaaaacgcaaagactggcaggag
ctgggcaataaaataactgagacagagtcagccctatctaaggtcagcta
tagtcttagaagccaggtgtgagagcttttcactcctagggcaagggctt
tcacacccaagtcatggttctaactagggagttccggtctagctaaccat
ctcatgaataatgcaatactctaaaaccacagcccgatctacttcctaaa
ccattgtaaattcttgtatataggtgtaactcagctataatcctaagcat
ctattctggtttctcctatggtcagaaacttctttcttccttagtgatgg
taaatttctgtgaagggcagtgacctaatttttactcaaagagatagtgt
aataccaggggcagtactgaattccaagcccaaggtcttgctaaggacga
actaggactgttggaacactgggcggacggctttagctatgtcagaattc
aatcttaaaaggcacttatgataggaaatatgaaagagagcacgtggatc
catacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104150168_104150466
seq2: B6Ng01-114P09.b_51_349 (reverse)

seq1  CCTTCCCCCTCCCCCCACCAGCCTTCCATCATAGCTGTAGGAATGCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCTCCCCCCACCAGCCTTCCATCATAGCTGTAGGAATGCTGAC  50

seq1  AACCGAAAGCTGATGATACAATCTTGTCCCTGCTTTCCATGAAGTGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAAAGCTGATGATACAATCTTGTCCCTGCTTTCCATGAAGTGCACA  100

seq1  CTGTCCGGGCCATCCCCTCGGCTTAGATATGAATGAACACACTGCTCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCGGGCCATCCCCTCGGCTTAGATATGAATGAACACACTGCTCGTG  150

seq1  TTTGGAGTCTGTTGGATGCTGAGGCAGGGAGAATCCTTTCTGTCCGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTCTGTTGGATGCTGAGGCAGGGAGAATCCTTTCTGTCCGAACA  200

seq1  GCTCAGCTGTGATACCACTTACCCTGTGAGACTGGCTGGGAGCTTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTGTGATACCACTTACCCTGTGAGACTGGCTGGGAGCTTCCTTC  250

seq1  AGAATTCAGGGACCATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGAA  299
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAGGGACCATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGAA  299

seq1: chr5_104029752_104030486
seq2: B6Ng01-114P09.g_68_802

seq1  GAATTCCACTCACAGGTACAGGTAATGTGTTCATTTTAACAGTGTGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCACAGGTACAGGTAATGTGTTCATTTTAACAGTGTGGCAT  50

seq1  TGTATACAGTCACGAGTGCTGCAGAATGAGAACCAGGCATTGAGGCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACAGTCACGAGTGCTGCAGAATGAGAACCAGGCATTGAGGCTCAC  100

seq1  ACCTGTAATCCCCTCACCAAGTCAGGACTGCCATGGGTTCAAGGCCAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAATCCCCTCACCAAGTCAGGACTGCCATGGGTTCAAGGCCAACC  150

seq1  CAGGCTACAGAGTTCCAAAGCAGCATAGTGAGAGACCTGCATCTATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACAGAGTTCCAAAGCAGCATAGTGAGAGACCTGCATCTATCTTT  200

seq1  GGTAGATGTGCCTGGTAGAGATGCTTATAAATAGTTGCCACAGACCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATGTGCCTGGTAGAGATGCTTATAAATAGTTGCCACAGACCTTCT  250

seq1  GGGTCCCTGTATCTGCGTGGAACGGGGTCTCTCGACGCGGGTGGGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCTGTATCTGCGTGGAACGGGGTCTCTCGACGCGGGTGGGCAAAG  300

seq1  CGTGGATGAATGACAGACAGACGCACACAGGAGAGTTTGTGTGGAATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGATGAATGACAGACAGACGCACACAGGAGAGTTTGTGTGGAATCTG  350

seq1  AGTGTAATTTGTCAAATCGAACATCAGACTTTTTATGCAGAAGACAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATTTGTCAAATCGAACATCAGACTTTTTATGCAGAAGACAATAA  400

seq1  GGAAGTTGGGTGACATACCCGCAAGGTACAAATGAGGTAACCGGATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGGGTGACATACCCGCAAGGTACAAATGAGGTAACCGGATGCTT  450

seq1  AATGACTCTTACACAGAACAGAGGAATGAAAACGCAAAGACTGGCAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCTTACACAGAACAGAGGAATGAAAACGCAAAGACTGGCAGGAG  500

seq1  CTGGGCAATAAAATAACTGAGACAGAGTCAGCCCTATCTAAGGTCAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAATAAAATAACTGAGACAGAGTCAGCCCTATCTAAGGTCAGCTA  550

seq1  TAGTCTTAGAAGCCAGGTGTGAGAGCTTTTCACTCCTAGGGCAAGGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTAGAAGCCAGGTGTGAGAGCTTTTCACTCCTAGGGCAAGGGCTT  600

seq1  TCACACCCAAGTCATGGTTCTAACTAGGGAGTTCCGGTCTAGCTAACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCAAGTCATGGTTCTAACTAGGGAGTTCCGGTCTAGCTAACCAT  650

seq1  CTCATGAATAATGCAATACTCTAAAACCACAGCCCGATCTACTTCCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAATAATGCAATACTCTAAAACCACAGCCCGATCTACTTCCTAAA  700

seq1  CCATTGTAAATTCTTGTATATAGGTGTAACTCAGC  735
      |||||||||||||||||||||||||||||||||||
seq2  CCATTGTAAATTCTTGTATATAGGTGTAACTCAGC  735