BAC Information

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BAC

Clone NameB6Ng01-114P15
Chromosome5 (Build37)
Map Location 12,556,585 - 12,753,121
singlet/doubletdoublet
Overlap geneSema3d, LOC668069
Upstream geneEG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, LOC668015, LOC100042917
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114P15.bB6Ng01-114P15.g
ACCDH920358DH920359
length2001,141
definitionDH920358|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P15, 5' end.DH920359|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,752,922 - 12,753,121)(12,556,585 - 12,557,739)
sequence
atgatagagcattaactgcaaggctaaatattaacaaataatttttggca
ttttcatatatacttaaaattttattttatttgttagtatttgtgtgtgt
gtgtgtgtgtgtgtgtgtaagtgtggtgcatgtgtggggtagtgtttgtg
tgctcttttacatttatgaaggtcaaagcataacttttaagagttaattt

gaattcaagccattgcagtcctccttccccccagtcatttaagaattata
agtggaaggatttgggactggggcaatctacattaattgcaataaataat
tttaatacaaagacatgctcactgaattttgtcacactcactaattgaac
acaaaattatcaaaatgactacataccactatttaattgttacattgctt
tctagttataatgtaagtaaaagaaactgcagcgaggcttctgtccctct
gttgtgcaagttcttgtactaagtgaactttaccactttaagtcaacaca
ttcataaaatcagtgaaattaagtttcacagactatcaagtgactactct
tgtaaaatttgagaatgtaagaattggaatgagtgataaagacatcataa
ctcacccccttattacactggaggaaactggtgtccagaatgattaaatc
gcacacccactctcatattacccaaccagcagaatgaaagtgtggtgctg
cccggtagagtttatgatcactctttttctcgttctttgatataattttt
atgtctttcttaatgtttccctggtaaatatattcctgcataacctacac
aaagttagttttatttattttatatcatctcctgccacacatatctgtgt
ttattaaaagtacaaaattacagttattttctttttcctccaattcaaaa
catttattcaaagttatatctcaatataccttatggctccaacattttca
aatgtacatacatgatatctcactacagtttttggtcattgttgttttga
agcagggtcttatacatcccaaataagcctgaaacttactatatattcaa
agatggcttgaattcctgaccttcctgcctttctctcccaagtgctagga
tgacagatctgtgctaacccacccagcatacttcatactttcttagtcac
acagtgttgattatttcacacagttggatttgagaacacatcaatgggca
tcattcatgtgtgctcatggactcatacttttaaagtggtagtttctata
agttagacttagtacataaagactgcatgtatcgtgctactttctagtac
aacaacagcagcacacaacttctgctattacaatcatgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12752922_12753121
seq2: B6Ng01-114P15.b_55_254 (reverse)

seq1  AAATTAACTCTTCAAAGTTCTGCTTTGACCTTCATACATGTGAAAGAGCA  50
      |||||||||||| |||||| |||||||||||||||| |||| ||||||||
seq2  AAATTAACTCTTAAAAGTTATGCTTTGACCTTCATAAATGTAAAAGAGCA  50

seq1  CACAAACACTACCCCACACATGCACCACACTTACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACACTACCCCACACATGCACCACACTTACACACACACACACACAC  100

seq1  ACACACACAAATACTAACAAATAAAATAAAATTTTAAGTATATATGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAATACTAACAAATAAAATAAAATTTTAAGTATATATGAAAA  150

seq1  TGCCAAAAATTATTTGTTAATATTTAGCCTTGCAGTTAATGCTCTATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAAATTATTTGTTAATATTTAGCCTTGCAGTTAATGCTCTATCAT  200

seq1: chr5_12556585_12557739
seq2: B6Ng01-114P15.g_69_1209

seq1  GAATTCAAGCCATTGCAGTCCTCCTTCCCCCCAGTCATTTAAGAATTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCATTGCAGTCCTCCTTCCCCCCAGTCATTTAAGAATTATA  50

seq1  AGTGGAAGGATTTGGGACTGGGGCAATCTACATTAATTGCAATAAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGGATTTGGGACTGGGGCAATCTACATTAATTGCAATAAATAAT  100

seq1  TTTAATACAAAGACATGCTCACTGAATTTTGTCACACTCACTAATTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACAAAGACATGCTCACTGAATTTTGTCACACTCACTAATTGAAC  150

seq1  ACAAAATTATCAAAATGACTACATACCACTATTTAATTGTTACATTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTATCAAAATGACTACATACCACTATTTAATTGTTACATTGCTT  200

seq1  TCTAGTTATAATGTAAGTAAAAGAAACTGCAGCGAGGCTTCTGTCCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTATAATGTAAGTAAAAGAAACTGCAGCGAGGCTTCTGTCCCTCT  250

seq1  GTTGTGCAAGTTCTTGTACTAAGTGAACTTTACCACTTTAAGTCAACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCAAGTTCTTGTACTAAGTGAACTTTACCACTTTAAGTCAACACA  300

seq1  TTCATAAAATCAGTGAAATTAAGTTTCACAGACTATCAAGTGACTACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAATCAGTGAAATTAAGTTTCACAGACTATCAAGTGACTACTCT  350

seq1  TGTAAAATTTGAGAATGTAAGAATTGGAATGAGTGATAAAGACATCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATTTGAGAATGTAAGAATTGGAATGAGTGATAAAGACATCATAA  400

seq1  CTCACCCCCTTATTACACTGGAGGAAACTGGTGTCCAGAATGATTAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCCTTATTACACTGGAGGAAACTGGTGTCCAGAATGATTAAATC  450

seq1  GCACACCCACTCTCATATTACCCAACCAGCAGAATGAAAGTGTGGTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCCACTCTCATATTACCCAACCAGCAGAATGAAAGTGTGGTGCTG  500

seq1  CCCGGTAGAGTTTATGATCACTCTTTTTCTCGTTCTTTGATATAATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTAGAGTTTATGATCACTCTTTTTCTCGTTCTTTGATATAATTTTT  550

seq1  ATGTCTTTCTTAATGTTTCCCTGGTAAATATATTCCTGCATAACCTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTCTTAATGTTTCCCTGGTAAATATATTCCTGCATAACCTACAC  600

seq1  AAAGTTAGTTTTATTTATTTTATATCATCTCCTGCCACACATATCTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGTTTTATTTATTTTATATCATCTCCTGCCACACATATCTGTGT  650

seq1  TTATTAAAAGTACAAAATTACAGTTATTTTCTTTTTCCTCCAATTCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAGTACAAAATTACAGTTATTTTCTTTTTCCTCCAATTCAAAA  700

seq1  CATTTATTCAAAGTTATATCTCAATATACCTTATGGCTCCAACATTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTCAAAGTTATATCTCAATATACCTTATGGCTCCAACATTTTCA  750

seq1  AATGTACATACATGATATCTCACTACAGTTTTTGGTCATTGTTGTTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACATACATGATATCTCACTACAGTTTTTGGTCATTGTTGTTTTGA  800

seq1  AGCAGGGTCTTATACATCCCAAATAAGCCTGAAACTTACTATATATTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTCTTATACATCCCAAATAAGCCTGAAACTTACTATATATTCAA  850

seq1  AGATGGCTTGAATTCCTGACCTTCCTGCCTTTCTCTCCCAAGTGCTAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTTGAATTCCTGACCTTCCTGCCTTTCTCTCCCAAGTGCTAGGA  900

seq1  TGACAGATCTGTGCTAACCCACCCAGCATACTTCATACTTTCTTAGGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGACAGATCTGTGCTAACCCACCCAGCATACTTCATACTTTCTTA-GTCA  949

seq1  CCACAGTGTTGATTATTTCACACAGTTGGATTTGAGAAACACATCAATGG  1000
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  -CACAGTGTTGATTATTTCACACAGTTGGATTTGAG-AACACATCAATGG  997

seq1  GCATCCATTCATGTGTGCTCATGGACTCATAACTTTTAAAGTGGTAGGTT  1050
      |||| ||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GCAT-CATTCATGTGTGCTCATGGACTCAT-ACTTTTAAAGTGGTA-GTT  1044

seq1  TCTATTAAGTTAGACTTAAGTTACATAAAGAACTGCATGTATCGTGCTAC  1100
      |||| |||||||||||||   ||||||||| |||||||||||||||||||
seq2  TCTA-TAAGTTAGACTTA--GTACATAAAG-ACTGCATGTATCGTGCTAC  1090

seq1  TTTCTAAGTAACAACAACAGCAGCAACAACAACTTCTGCTATTACAATCA  1150
      ||||| ||| |||||||||||||||   ||||||||||||||||||||||
seq2  TTTCT-AGT-ACAACAACAGCAGCA--CACAACTTCTGCTATTACAATCA  1136

seq1  TGAAC  1155
      |||||
seq2  TGAAC  1141