BAC Information

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BAC

Clone NameB6Ng01-114P23
Chromosome5 (Build37)
Map Location 97,556,109 - 97,696,222
singlet/doubletdoublet
Overlap geneLOC100040598, EG433923
Upstream geneCnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3
Downstream geneEG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114P23.bB6Ng01-114P23.g
ACCDH920374DH920375
length809956
definitionDH920374|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P23, 5' end.DH920375|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,695,415 - 97,696,222)(97,556,109 - 97,557,065)
sequence
gaattctcattgtattaaatgttatcaacaggaatgagagataattataa
gactaaagaataacagtgggctggagagatggctcagccgttaaaggcta
ggctcacaaccaaaaatataagaataacagtggtgctgatcttttacagt
ggtcacctctgaagaggctgtatactcaggctgtcgagcgctatagttag
aactctcagcttcaaggtctccatggtatcaggaggaacacaagaagagc
tgaaacttgcatggggacaacctaaggaatgagttactccaccaagaata
ctgaaaatatcattcttacagttatgaggcaaaaattacagctcaaacca
gccactgcctggatatcaacgctgagataagctttgcatttcgggcaggg
ctgctgcactgattcacttggtagattacttgctgtgtaagattgtgggt
cagagttctaatccccagttcccacacggatgtccaggaggcatactggc
ccatctgggatcccagccctcctgatacagaaacaaaatgccccagagca
agctcactagatgaattagttgaattggtgagctctgaattaattgaata
tataaagtggaggaagaaaagtactagacaataacttctgacctccacat
gcacacacacacacacacacacacacacacacacacacacatacatgtgc
atctgtagacacatgtgcaagtatgcacacacacatactaacactaaaga
aagacaaacacattcccaaacaatctctctctctctctctctctctctct
ctctctctc
gaattcttaactctcagctacagaaccagaagttttaagaaaacacagct
agagagcaacaaagcagagggcactcggggactactagcaggttttggag
cactggtttaaaaaaaaaaatctgatattagtcctggcctgccctgcttt
ctctttccattggtgatatttgtcttaatctttagcttctagttagcatt
atttttgctatctttttatgtgtaggtgttttgccttcatgtacgactac
aacgtgcctgtgcaatgtcctcagaaacaggagagggcatgggatgtgct
tggactggaattagagcaacagtgaactgccacgctggtgctgggattga
gtctggattctctaaatggccagtgcttaaactgctgactcatcactccg
gcttcgtatttgttagtttttattttcaattaagattcatccctaaggac
tttactccctaaaatgagctgagaatggccagcgttcaatgtgtgtaaga
aaacatccatgccattagcttcaaggaatcctaaattctctccctagttt
tcctgggctggtcagaaagctggaatgcctttttttccctccttttcctg
ttggttcatctgttctgactattcttttcttccatttcttcctttgcaag
gaatgctctttaaagacctgatcttaaaattccaccataggcagagtctt
tccttgagaaactgtcttaaaaatcccccaggaggaagcagctagccagt
cacaactccgggcattgggactctgctctctgcaactttgtttcctctca
tcctgggattcattttcatcttgtctagaaacctgagaggaagccctaca
caatcggaggagaggcccttggtattgcaaacatcatatgccccagtaca
ggggaataccagggccaggaagcagactgggtgggttggggagcagggcc
gggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_97695415_97696222
seq2: B6Ng01-114P23.b_48_856 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGTTTGGGAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGTTTGGGAATGT  50

seq1  GTTTGTCTTTC-TTAGTGTTAGTATGTGTGTGTGCATACTTGCACATGTG  99
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTTCTTTAGTGTTAGTATGTGTGTGTGCATACTTGCACATGTG  100

seq1  TCTACAGATGCACATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGATGCACATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TGTGTGTGCATGTGGAGGTCAGAAGTTATTGTCTAGTACTTTTCTTCCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCATGTGGAGGTCAGAAGTTATTGTCTAGTACTTTTCTTCCTC  200

seq1  CACTTTATATATTCAATTAATTCAGAGCTCACCAATTCAACTAATTCATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATATATTCAATTAATTCAGAGCTCACCAATTCAACTAATTCATC  250

seq1  TAGTGAGCTTGCTCTGGGGCATTTTGTTTCTGTATCAGGAGGGCTGGGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGCTTGCTCTGGGGCATTTTGTTTCTGTATCAGGAGGGCTGGGAT  300

seq1  CCCAGATGGGCCAGTATGCCTCCTGGACATCCGTGTGGGAACTGGGGATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGGGCCAGTATGCCTCCTGGACATCCGTGTGGGAACTGGGGATT  350

seq1  AGAACTCTGACCCACAATCTTACACAGCAAGTAATCTACCAAGTGAATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTGACCCACAATCTTACACAGCAAGTAATCTACCAAGTGAATCA  400

seq1  GTGCAGCAGCCCTGCCCGAAATGCAAAGCTTATCTCAGCGTTGATATCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCAGCCCTGCCCGAAATGCAAAGCTTATCTCAGCGTTGATATCCA  450

seq1  GGCAGTGGCTGGTTTGAGCTGTAATTTTTGCCTCATAACTGTAAGAATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGCTGGTTTGAGCTGTAATTTTTGCCTCATAACTGTAAGAATGA  500

seq1  TATTTTCAGTATTCTTGGTGGAGTAACTCATTCCTTAGGTTGTCCCCATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGTATTCTTGGTGGAGTAACTCATTCCTTAGGTTGTCCCCATG  550

seq1  CAAGTTTCAGCTCTTCTTGTGTTCCTCCTGATACCATGGAGACCTTGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCAGCTCTTCTTGTGTTCCTCCTGATACCATGGAGACCTTGAAG  600

seq1  CTGAGAGTTCTAACTATAGCGCTCGACAGCCTGAGTATACAGCCTCTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTTCTAACTATAGCGCTCGACAGCCTGAGTATACAGCCTCTTCA  650

seq1  GAGGTGACCACTGTAAAAGATCAGCACCACTGTTATTCTTATATTTTTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACCACTGTAAAAGATCAGCACCACTGTTATTCTTATATTTTTGG  700

seq1  TTGTGAGCCTAGCCTTTAACGGCTGAGCCATCTCTCCAGCCCACTGTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCTAGCCTTTAACGGCTGAGCCATCTCTCCAGCCCACTGTTAT  750

seq1  TCTTTAGTCTTATAATTATCTCTCATTCCTTTTGATAACATTTAATACAA  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTTTAGTCTTATAATTATCTCTCATTCCTGTTGATAACATTTAATACAA  800

seq1  TGAGAATTC  808
      |||||||||
seq2  TGAGAATTC  809

seq1: chr5_97556109_97557065
seq2: B6Ng01-114P23.g_66_1021

seq1  GAATTCTTAACTCTCAGCTACAGAACCAGAAGTTTTAAGAAAACACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTCTCAGCTACAGAACCAGAAGTTTTAAGAAAACACAGCT  50

seq1  AGAGAGCAACAAAGCAGAGGGCACTCGGGGACTACTAGCAGGTTTTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAACAAAGCAGAGGGCACTCGGGGACTACTAGCAGGTTTTGGAG  100

seq1  CACTGGTTTAAAAAAAAAAATCTGATATTAGTCCTGGCCTGCCCTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTTAAAAAAAAAAATCTGATATTAGTCCTGGCCTGCCCTGCTTT  150

seq1  CTCTTTCCATTGGTGATATTTGTCTTAATCTTTAGCTTCTAGTTAGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCATTGGTGATATTTGTCTTAATCTTTAGCTTCTAGTTAGCATT  200

seq1  ATTTTTGCTATCTTTTTATGTGTAGGTGTTTTGCCTTCATGTACGACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTATCTTTTTATGTGTAGGTGTTTTGCCTTCATGTACGACTAC  250

seq1  AACGTGCCTGTGCAATGTCCTCAGAAACAGGAGAGGGCATGGGATGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGCCTGTGCAATGTCCTCAGAAACAGGAGAGGGCATGGGATGTGCT  300

seq1  TGGACTGGAATTAGAGCAACAGTGAACTGCCACGCTGGTGCTGGGATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGGAATTAGAGCAACAGTGAACTGCCACGCTGGTGCTGGGATTGA  350

seq1  GTCTGGATTCTCTAAATGGCCAGTGCTTAAACTGCTGACTCATCACTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATTCTCTAAATGGCCAGTGCTTAAACTGCTGACTCATCACTCCG  400

seq1  GCTTCGTATTTGTTAGTTTTTATTTTCAATTAAGATTCATCCCTAAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGTATTTGTTAGTTTTTATTTTCAATTAAGATTCATCCCTAAGGAC  450

seq1  TTTACTCCCTAAAATGAGCTGAGAATGGCCAGCGTTCAATGTGTGTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCCTAAAATGAGCTGAGAATGGCCAGCGTTCAATGTGTGTAAGA  500

seq1  AAACATCCATGCCATTAGCTTCAAGGAATCCTAAATTCTCTCCCTAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCATGCCATTAGCTTCAAGGAATCCTAAATTCTCTCCCTAGTTT  550

seq1  TCCTGGGCTGGTCAGAAAGCTGGAATGCCTTTTTTTCCCTCCTTTTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCTGGTCAGAAAGCTGGAATGCCTTTTTTTCCCTCCTTTTCCTG  600

seq1  TTGGTTCATCTGTTCTGACTATTCTTTTCTTCCATTTCTTCCTTTGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCATCTGTTCTGACTATTCTTTTCTTCCATTTCTTCCTTTGCAAG  650

seq1  GAATGCTCTTTAAAGACCTGATCTTAAAATTCCACCATAGGCAGAGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTCTTTAAAGACCTGATCTTAAAATTCCACCATAGGCAGAGTCTT  700

seq1  TCCTTGAGAAACTGTCTTAAAAATCCCCCAGGAGGAAGCAGCTAGCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGAAACTGTCTTAAAAATCCCCCAGGAGGAAGCAGCTAGCCAGT  750

seq1  CACAACTCCGGGCATTGGGACTCTGCTCTCTGCAACTTTGTTTCCTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTCCGGGCATTGGGACTCTGCTCTCTGCAACTTTGTTTCCTCTCA  800

seq1  TCCTGGGATTCATTTTCATCTTGTCTAGAAACCTGAGAGGAAGCCCTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGATTCATTTTCATCTTGTCTAGAAACCTGAGAGGAAGCCCTACA  850

seq1  CAATCGGAGGAGAGGCCCTTGGTATTGCAAACATCATATGCCCCAGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCGGAGGAGAGGCCCTTGGTATTGCAAACATCATATGCCCCAGTACA  900

seq1  GGGGAATACCAGGGCCAGGAAGCAGGACTGGGTGGGTTGGGGAGCAGGGC  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGGAATACCAGGGCCAGGAAGCA-GACTGGGTGGGTTGGGGAGCAGGGC  949

seq1  GGGGGGG  957
       ||||||
seq2  CGGGGGG  956